Wall clock time and date at job start Tue Mar 31 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.67380 * 2 1 4 4 O 1.44415 * 110.65698 * 237.02614 * 2 1 3 5 5 C 1.43738 * 107.00438 * 201.48208 * 4 2 1 6 6 C 1.54102 * 107.29331 * 26.48916 * 5 4 2 7 7 C 1.54818 * 104.18784 * 357.97032 * 6 5 4 8 8 H 1.08998 * 110.90475 * 97.34748 * 7 6 5 9 9 C 1.50696 * 110.90577 * 220.92003 * 7 6 5 10 10 O 1.21285 * 119.99478 * 115.67139 * 9 7 6 11 11 N 1.34770 * 120.00013 * 295.66827 * 9 7 6 12 12 C 1.46772 * 125.34301 * 0.04670 * 11 9 7 13 13 C 1.53961 * 106.62895 * 198.47937 * 12 11 9 14 14 H 1.09006 * 113.61011 * 94.61578 * 13 12 11 15 15 C 1.53930 * 109.25310 * 221.80575 * 13 12 11 16 16 N 1.46749 * 106.75599 * 81.61168 * 15 13 12 17 17 C 1.36932 * 125.33021 * 198.38291 * 16 15 13 18 18 H 1.08004 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00224 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99616 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47039 * 119.99464 * 21 19 17 24 24 H 1.48498 * 109.47363 * 240.00005 * 21 19 17 25 25 C 1.46743 * 109.28462 * 18.35955 * 16 15 13 26 26 C 1.53696 * 108.02156 * 359.15056 * 25 16 15 27 27 H 1.08998 * 113.05663 * 106.20179 * 26 25 16 28 28 C 1.46673 * 125.33571 * 179.97438 * 11 9 7 29 29 H 1.09003 * 109.47723 * 297.04252 * 1 2 3 30 30 H 1.09000 * 109.47034 * 57.03549 * 1 2 3 31 31 H 1.09001 * 109.47249 * 177.03740 * 1 2 3 32 32 H 1.08998 * 109.88212 * 267.06888 * 5 4 2 33 33 H 1.08999 * 110.00474 * 145.97931 * 5 4 2 34 34 H 1.09001 * 110.48819 * 239.29274 * 6 5 4 35 35 H 1.09001 * 110.48920 * 116.64563 * 6 5 4 36 36 H 1.09001 * 110.02861 * 79.18348 * 12 11 9 37 37 H 1.09006 * 110.02423 * 317.77044 * 12 11 9 38 38 H 1.09002 * 110.01177 * 200.95080 * 15 13 12 39 39 H 1.08999 * 110.01217 * 322.27704 * 15 13 12 40 40 H 0.96999 * 119.99563 * 180.02562 * 20 19 17 41 41 H 1.08992 * 109.74901 * 239.51039 * 25 16 15 42 42 H 1.08999 * 109.76659 * 118.80191 * 25 16 15 43 43 H 1.08998 * 109.77151 * 59.87404 * 28 11 9 44 44 H 1.08999 * 109.79403 * 299.12289 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0394 -0.7355 -1.1336 5 6 3.3845 -1.1262 -0.8111 6 6 3.4794 -1.2174 0.7243 7 6 2.0757 -0.7892 1.2173 8 1 1.4545 -1.6602 1.4264 9 6 2.1795 0.0980 2.4309 10 8 1.8033 1.2497 2.3740 11 7 2.6903 -0.3882 3.5794 12 6 3.1796 -1.7575 3.7784 13 6 3.2180 -1.9951 5.2991 14 1 2.3205 -2.4757 5.6887 15 6 4.5100 -2.7487 5.6626 16 7 5.5782 -1.7453 5.7377 17 6 6.9202 -2.0116 5.6811 18 1 7.2647 -3.0295 5.5731 19 6 7.8380 -0.9734 5.7636 20 7 7.4181 0.2671 5.8957 21 14 9.6687 -1.3367 5.6870 22 1 9.8772 -2.7994 5.5370 23 1 10.2653 -0.6304 4.5250 24 1 10.3188 -0.8693 6.9376 25 6 4.9818 -0.4124 5.8824 26 6 3.4532 -0.5725 5.8789 27 1 3.0079 -0.4405 6.8650 28 6 2.8456 0.3687 4.8262 29 1 -0.3635 0.4672 0.9153 30 1 -0.3633 0.5592 -0.8622 31 1 -0.3634 -1.0263 -0.0531 32 1 4.0865 -0.3795 -1.1821 33 1 3.6073 -2.0968 -1.2544 34 1 4.2408 -0.5343 1.1007 35 1 3.6967 -2.2399 1.0331 36 1 4.1804 -1.8609 3.3590 37 1 2.5014 -2.4685 3.3065 38 1 4.3945 -3.2434 6.6270 39 1 4.7424 -3.4838 4.8921 40 1 8.0594 0.9926 5.9529 41 1 5.2879 0.2205 5.0495 42 1 5.3033 0.0352 6.8228 43 1 1.8725 0.7228 5.1663 44 1 3.5100 1.2171 4.6626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049138487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:00 Heat of formation + Delta-G solvation = -72.827964 kcal Electronic energy + Delta-G solvation = -25141.958089 eV Core-core repulsion = 21672.906681 eV Total energy + Delta-G solvation = -3469.051408 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.88165 -40.55798 -39.14034 -36.59932 -34.25103 -33.57673 -32.55126 -31.66534 -31.11026 -28.03728 -27.04500 -26.91236 -24.77557 -22.99623 -22.65665 -21.77353 -20.77827 -20.35841 -18.92438 -18.40074 -17.57794 -17.19554 -16.75089 -16.51456 -16.22748 -15.86832 -15.52592 -15.30238 -14.91165 -14.61504 -14.48882 -14.17215 -13.68792 -13.50040 -13.33441 -13.32391 -13.27461 -13.05613 -12.90446 -12.75549 -12.67803 -12.32531 -12.11928 -11.94435 -11.87618 -11.85565 -11.73958 -11.52488 -11.34749 -10.99817 -10.71883 -10.64445 -9.68206 -8.86478 -7.85088 -5.19556 1.45716 1.46043 1.47300 1.56182 1.91471 2.49511 2.74524 3.26730 3.34567 3.45282 3.55261 3.58729 3.69028 3.87075 3.91932 4.01171 4.12953 4.16407 4.28293 4.32479 4.37107 4.53071 4.55602 4.59365 4.67936 4.73895 4.81196 4.85143 4.91117 4.92925 4.97230 5.04551 5.07077 5.10852 5.21723 5.25161 5.41318 5.49984 5.63465 5.77956 5.83573 6.21731 6.47300 7.02266 7.11719 7.81498 8.42577 9.25256 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.004559 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.937157 B = 6139.833431 C = 6791.254942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.090 3.910 3 H 0.057 0.943 4 O -0.384 6.384 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.127 4.127 8 H 0.139 0.861 9 C 0.533 3.467 10 O -0.581 6.581 11 N -0.605 5.605 12 C 0.113 3.887 13 C -0.094 4.094 14 H 0.136 0.864 15 C 0.138 3.862 16 N -0.623 5.623 17 C -0.234 4.234 18 H 0.088 0.912 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 0.972 3.028 22 H -0.261 1.261 23 H -0.297 1.297 24 H -0.296 1.296 25 C 0.198 3.802 26 C -0.112 4.112 27 H 0.114 0.886 28 C 0.124 3.876 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.030 0.970 39 H 0.051 0.949 40 H 0.243 0.757 41 H 0.007 0.993 42 H 0.002 0.998 43 H 0.078 0.922 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 -7.368 -8.331 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.033 3.967 3 H 0.075 0.925 4 O -0.303 6.303 5 C -0.029 4.029 6 C -0.181 4.181 7 C -0.148 4.148 8 H 0.157 0.843 9 C 0.323 3.677 10 O -0.462 6.462 11 N -0.337 5.337 12 C -0.009 4.009 13 C -0.113 4.113 14 H 0.154 0.846 15 C 0.013 3.987 16 N -0.349 5.349 17 C -0.363 4.363 18 H 0.105 0.895 19 C -0.260 4.260 20 N -0.603 5.603 21 Si 0.802 3.198 22 H -0.185 1.185 23 H -0.225 1.225 24 H -0.223 1.223 25 C 0.073 3.927 26 C -0.132 4.132 27 H 0.132 0.868 28 C 0.001 3.999 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.096 0.904 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.959 -6.710 -8.622 17.726 hybrid contribution 1.863 0.775 0.527 2.086 sum -12.096 -5.934 -8.095 15.718 Atomic orbital electron populations 1.21714 0.91154 1.03699 1.02872 1.22914 0.96694 0.94351 0.82789 0.92498 1.88859 1.28591 1.73737 1.39132 1.23249 0.83895 1.01936 0.93774 1.22943 0.94707 1.04081 0.96388 1.22889 0.99832 0.99730 0.92389 0.84318 1.20382 0.76317 0.87525 0.83458 1.90670 1.51290 1.19965 1.84292 1.48323 1.60594 1.13970 1.10806 1.22202 0.99701 0.82234 0.96781 1.22979 0.99371 0.95030 0.93937 0.84604 1.21405 0.86785 0.91789 0.98688 1.44536 1.01559 1.02789 1.86047 1.19493 0.81706 0.93453 1.41646 0.89455 1.25598 1.02143 0.95326 1.02885 1.70209 1.32981 0.98872 1.58197 0.85086 0.80335 0.77991 0.76425 1.18497 1.22482 1.22303 1.20761 0.87834 0.86829 0.97291 1.22993 0.96185 0.95227 0.98809 0.86841 1.21684 1.00139 0.94281 0.83792 0.91273 0.91225 0.90228 0.92492 0.86889 0.92612 0.87222 0.92617 0.87287 0.95240 0.93040 0.94754 0.97493 0.98000 0.90351 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.66 71.98 0.70 -2.07 16 2 C 0.09 2.23 3.05 31.28 0.10 2.32 16 3 H 0.06 1.69 7.47 -2.39 -0.02 1.68 16 4 O -0.38 -9.32 11.23 -148.98 -1.67 -10.99 16 5 C 0.05 0.99 7.70 72.36 0.56 1.54 16 6 C -0.14 -3.18 5.48 31.59 0.17 -3.01 16 7 C -0.13 -2.95 2.23 -10.24 -0.02 -2.98 16 8 H 0.14 2.42 7.80 -2.39 -0.02 2.40 16 9 C 0.53 16.50 7.09 87.66 0.62 17.12 16 10 O -0.58 -22.14 16.07 -3.05 -0.05 -22.19 16 11 N -0.61 -18.40 3.31 -817.40 -2.71 -21.10 16 12 C 0.11 2.93 5.00 86.65 0.43 3.37 16 13 C -0.09 -2.52 4.17 -9.33 -0.04 -2.56 16 14 H 0.14 2.58 8.14 -2.38 -0.02 2.56 16 15 C 0.14 4.77 6.37 86.65 0.55 5.32 16 16 N -0.62 -29.68 3.37 -697.60 -2.35 -32.04 16 17 C -0.23 -12.47 10.25 84.03 0.86 -11.61 16 18 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.07 -3.72 5.48 84.86 0.47 -3.26 16 20 N -0.95 -57.21 10.25 21.65 0.22 -56.99 16 21 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 25 C 0.20 9.36 4.76 86.57 0.41 9.78 16 26 C -0.11 -3.74 4.02 -9.49 -0.04 -3.78 16 27 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 28 C 0.12 4.13 6.23 86.59 0.54 4.67 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.56 7.85 -2.39 -0.02 1.54 16 35 H 0.11 1.95 8.01 -2.39 -0.02 1.93 16 36 H 0.06 1.76 7.48 -2.39 -0.02 1.74 16 37 H 0.11 1.92 7.62 -2.38 -0.02 1.90 16 38 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 1.65 7.95 -2.39 -0.02 1.64 16 40 H 0.24 14.38 8.31 -92.71 -0.77 13.60 16 41 H 0.01 0.38 6.51 -2.39 -0.02 0.37 16 42 H 0.00 0.10 7.46 -2.39 -0.02 0.08 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.04 1.53 7.43 -2.39 -0.02 1.52 16 Total: -1.00 -71.11 341.60 1.74 -69.37 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.97 Total: 11.97 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.31 Total: 14.86 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.84 Total: -110.13 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.72 Total: -33.18 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -71.11 1.74 -69.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049138487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.461 kcal (2) G-P(sol) polarization free energy of solvation -71.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds