Wall clock time and date at job start Tue Mar 31 2020 06:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 115.54945 * 2 1 4 4 C 1.52999 * 117.50089 * 145.71421 * 2 1 3 5 5 C 1.53000 * 60.00124 * 107.49169 * 4 2 1 6 6 H 1.09005 * 117.51701 * 252.52093 * 5 4 2 7 7 C 1.52995 * 117.50191 * 107.49226 * 5 4 2 8 8 C 1.50700 * 109.47526 * 116.37697 * 7 5 4 9 9 O 1.21285 * 119.99666 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00224 * 179.97438 * 8 7 5 11 11 C 1.47132 * 121.05443 * 359.71975 * 10 8 7 12 12 C 1.53228 * 108.72324 * 232.50093 * 11 10 8 13 13 O 1.43102 * 109.34410 * 305.86579 * 12 11 10 14 14 C 1.42492 * 113.97558 * 59.96237 * 13 12 11 15 15 C 1.53465 * 113.75441 * 73.19258 * 14 13 12 16 16 N 1.47669 * 85.97450 * 91.28513 * 15 14 13 17 17 C 1.36933 * 134.46314 * 204.24745 * 16 15 14 18 18 H 1.07996 * 120.00498 * 173.55413 * 17 16 15 19 19 C 1.38819 * 119.99688 * 353.56115 * 17 16 15 20 20 N 1.31617 * 119.99783 * 5.07500 * 19 17 16 21 21 Si 1.86801 * 119.99921 * 185.07738 * 19 17 16 22 22 H 1.48500 * 109.46764 * 94.98359 * 21 19 17 23 23 H 1.48500 * 109.47020 * 214.98201 * 21 19 17 24 24 H 1.48499 * 109.47155 * 334.98698 * 21 19 17 25 25 C 1.47682 * 91.08342 * 24.28977 * 16 15 14 26 26 C 1.47348 * 121.05555 * 180.02562 * 10 8 7 27 27 H 1.09004 * 109.46468 * 205.66197 * 1 2 3 28 28 H 1.08999 * 109.46748 * 325.66401 * 1 2 3 29 29 H 1.09000 * 109.46905 * 85.66295 * 1 2 3 30 30 H 1.08995 * 117.50005 * 0.02562 * 4 2 1 31 31 H 1.08996 * 117.49736 * 214.97631 * 4 2 1 32 32 H 1.08996 * 109.47404 * 356.37537 * 7 5 4 33 33 H 1.09008 * 109.46878 * 236.37884 * 7 5 4 34 34 H 1.08991 * 109.59448 * 352.27428 * 11 10 8 35 35 H 1.09003 * 109.59247 * 112.72957 * 11 10 8 36 36 H 1.08999 * 109.49259 * 185.90786 * 12 11 10 37 37 H 1.08998 * 109.51318 * 65.84234 * 12 11 10 38 38 H 1.09005 * 113.79353 * 205.54226 * 15 14 13 39 39 H 1.08995 * 113.80213 * 337.02020 * 15 14 13 40 40 H 0.97000 * 119.99944 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.78665 * 221.44397 * 25 16 15 42 42 H 1.08993 * 113.89432 * 89.98979 * 25 16 15 43 43 H 1.09005 * 109.74172 * 250.97050 * 26 10 8 44 44 H 1.09001 * 109.74277 * 11.64335 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1213 0.7645 5 6 2.2366 -1.1206 -0.7655 6 1 1.6113 -1.8577 -1.2695 7 6 3.5490 -0.7753 -1.4718 8 6 4.0218 -1.9668 -2.2642 9 8 3.3725 -2.9912 -2.2644 10 7 5.1654 -1.8936 -2.9735 11 6 5.9673 -0.6602 -2.9955 12 6 6.2287 -0.2695 -4.4539 13 8 6.8175 -1.3768 -5.1431 14 6 6.0055 -2.5477 -5.1577 15 6 4.7968 -2.4500 -6.0983 16 7 5.6807 -3.0361 -7.1259 17 6 5.7044 -3.0166 -8.4949 18 1 6.5371 -3.4524 -9.0268 19 6 4.6580 -2.4366 -9.1990 20 7 3.6931 -1.8177 -8.5525 21 14 4.6196 -2.5347 -11.0640 22 1 3.7902 -3.6936 -11.4817 23 1 4.0360 -1.2846 -11.6135 24 1 6.0019 -2.7040 -11.5794 25 6 6.5283 -3.6525 -6.0854 26 6 5.6489 -3.0442 -3.7568 27 1 -0.3632 -0.9264 0.4451 28 1 -0.3633 0.8486 0.5797 29 1 -0.3633 0.0777 -1.0247 30 1 1.6114 -1.8592 1.2671 31 1 3.1716 -0.8757 1.2678 32 1 4.3022 -0.5104 -0.7298 33 1 3.3890 0.0678 -2.1440 34 1 5.4216 0.1395 -2.4950 35 1 6.9162 -0.8321 -2.4874 36 1 6.9085 0.5819 -4.4861 37 1 5.2872 -0.0016 -4.9334 38 1 3.9652 -3.0949 -5.8141 39 1 4.4892 -1.4270 -6.3145 40 1 2.9617 -1.4127 -9.0444 41 1 7.5965 -3.5847 -6.2914 42 1 6.2134 -4.6551 -5.7962 43 1 6.5329 -3.4684 -3.2806 44 1 4.8667 -3.8005 -3.8214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053410351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:13 Heat of formation + Delta-G solvation = 8.896818 kcal Electronic energy + Delta-G solvation = -24508.129155 eV Core-core repulsion = 21042.621600 eV Total energy + Delta-G solvation = -3465.507555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41959 -38.98487 -37.60714 -36.18821 -34.39916 -32.28964 -30.93391 -29.81515 -28.20214 -27.37695 -25.69355 -25.06668 -23.29318 -22.13803 -21.31077 -20.43355 -19.18093 -18.70503 -17.08173 -16.78977 -16.31085 -15.62911 -15.55762 -15.00683 -14.83511 -14.57388 -14.11599 -14.06098 -13.69974 -13.41874 -13.28224 -13.20279 -12.77090 -12.49234 -12.36872 -12.20040 -12.01766 -11.55534 -11.36121 -11.31149 -11.13217 -10.87609 -10.80454 -10.64224 -10.22784 -10.13551 -10.00457 -9.91157 -9.59674 -9.47388 -9.22957 -8.79232 -8.21713 -6.85021 -5.74930 -3.06153 2.74980 2.98660 3.41585 3.46359 3.48546 3.61863 4.05527 4.36817 4.46869 4.55440 4.68637 4.89666 4.92035 5.00663 5.11611 5.13579 5.24526 5.25762 5.27940 5.34990 5.43763 5.51622 5.59568 5.61197 5.63591 5.69494 5.77820 5.83988 5.86168 5.98621 6.07596 6.09600 6.25814 6.32271 6.48287 6.51364 6.60293 7.02959 7.19268 7.48995 7.52432 7.82385 7.99303 8.29088 9.06253 9.72848 10.60440 11.42803 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.003831 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.042979 B = 7307.042100 C = 8015.852297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.155 4.155 3 H 0.103 0.897 4 C -0.175 4.175 5 C -0.135 4.135 6 H 0.119 0.881 7 C -0.109 4.109 8 C 0.519 3.481 9 O -0.538 6.538 10 N -0.612 5.612 11 C 0.074 3.926 12 C 0.046 3.954 13 O -0.342 6.342 14 C 0.049 3.951 15 C 0.155 3.845 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.136 3.864 26 C 0.100 3.900 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 5.729 18.700 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.173 4.173 3 H 0.121 0.879 4 C -0.211 4.211 5 C -0.153 4.153 6 H 0.137 0.863 7 C -0.148 4.148 8 C 0.307 3.693 9 O -0.414 6.414 10 N -0.346 5.346 11 C -0.049 4.049 12 C -0.032 4.032 13 O -0.260 6.260 14 C 0.007 3.993 15 C 0.029 3.971 16 N -0.329 5.329 17 C -0.347 4.347 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.009 3.991 26 C -0.023 4.023 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.517 5.270 18.277 19.028 hybrid contribution -0.279 0.036 -0.904 0.947 sum 0.238 5.305 17.373 18.167 Atomic orbital electron populations 1.21361 0.92807 1.01784 1.02072 1.22419 0.95418 0.94451 1.04998 0.87918 1.23194 1.02415 1.01284 0.94254 1.22184 0.97712 1.01814 0.93603 0.86280 1.21235 0.96979 0.97172 0.99453 1.20512 0.79842 0.89707 0.79238 1.90682 1.54857 1.32266 1.63629 1.48177 1.23677 1.14326 1.48460 1.22441 0.96269 0.87046 0.99181 1.22872 1.00095 0.90162 0.90062 1.87927 1.42457 1.20158 1.75462 1.23708 0.95900 0.87957 0.91758 1.22613 0.90693 0.99429 0.84344 1.45775 1.29335 1.57369 1.00453 1.19010 1.03619 1.32949 0.79134 0.90076 1.24807 0.96698 1.00832 0.98034 1.69836 1.12784 1.40106 1.34030 0.86114 0.77538 0.77110 0.85127 1.21639 1.21747 1.20523 1.22494 0.96695 0.92907 0.86985 1.22227 1.00093 0.88897 0.91133 0.92538 0.92301 0.91996 0.88829 0.89046 0.89033 0.88415 0.89212 0.90677 0.88155 0.92117 0.94712 0.91082 0.93701 0.92664 0.93252 0.91427 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.19 37.16 0.38 -0.65 16 2 C -0.15 -1.38 6.13 -90.62 -0.56 -1.94 16 3 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.17 -1.62 9.82 -26.73 -0.26 -1.88 16 5 C -0.13 -1.50 5.13 -90.62 -0.47 -1.97 16 6 H 0.12 1.63 7.30 -51.93 -0.38 1.25 16 7 C -0.11 -1.16 4.35 -27.89 -0.12 -1.28 16 8 C 0.52 7.80 7.71 -10.99 -0.08 7.71 16 9 O -0.54 -10.12 15.06 5.55 0.08 -10.04 16 10 N -0.61 -8.97 3.03 -172.45 -0.52 -9.49 16 11 C 0.07 0.85 6.51 -3.58 -0.02 0.82 16 12 C 0.05 0.66 6.88 37.28 0.26 0.92 16 13 O -0.34 -6.53 10.52 -35.23 -0.37 -6.91 16 14 C 0.05 0.95 1.21 -90.33 -0.11 0.84 16 15 C 0.15 3.80 6.56 -3.17 -0.02 3.78 16 16 N -0.60 -16.03 3.70 -180.28 -0.67 -16.70 16 17 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 18 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.97 11.51 55.49 0.64 -27.33 16 21 Si 0.91 22.58 29.56 -169.99 -5.02 17.56 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.14 2.87 8.33 -3.17 -0.03 2.84 16 26 C 0.10 1.66 5.78 -3.66 -0.02 1.63 16 27 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.09 0.74 8.03 -51.93 -0.42 0.33 16 32 H 0.09 0.76 7.73 -51.93 -0.40 0.36 16 33 H 0.10 0.93 7.68 -51.92 -0.40 0.54 16 34 H 0.09 0.74 6.02 -51.93 -0.31 0.43 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.99 7.19 -51.93 -0.37 0.62 16 38 H 0.04 0.91 7.94 -51.93 -0.41 0.49 16 39 H 0.07 1.93 6.50 -51.93 -0.34 1.59 16 40 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -34.57 351.97 -9.01 -43.58 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.14 Total: -0.01 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.31 Total: 4.03 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.55 Total: -53.52 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.29 Total: -16.94 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.57 -9.01 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053410351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.478 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds