Wall clock time and date at job start Tue Mar 31 2020 06:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 115.54945 * 2 1 4 4 C 1.52999 * 117.50089 * 145.71421 * 2 1 3 5 5 C 1.53000 * 60.00124 * 107.49169 * 4 2 1 6 6 H 1.09005 * 117.51701 * 252.52093 * 5 4 2 7 7 C 1.52995 * 117.50191 * 107.49226 * 5 4 2 8 8 C 1.50700 * 109.47526 * 116.37697 * 7 5 4 9 9 O 1.21285 * 119.99666 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00224 * 179.97438 * 8 7 5 11 11 C 1.47132 * 121.05443 * 359.71975 * 10 8 7 12 12 C 1.53228 * 108.72324 * 232.50093 * 11 10 8 13 13 O 1.43102 * 109.34410 * 305.86579 * 12 11 10 14 14 C 1.42492 * 113.97558 * 59.96237 * 13 12 11 15 15 C 1.53465 * 113.75441 * 73.19258 * 14 13 12 16 16 N 1.47669 * 85.97450 * 91.28513 * 15 14 13 17 17 C 1.36933 * 134.46314 * 204.24745 * 16 15 14 18 18 H 1.07996 * 120.00498 * 173.55413 * 17 16 15 19 19 C 1.38819 * 119.99688 * 353.56115 * 17 16 15 20 20 N 1.31617 * 119.99783 * 5.07500 * 19 17 16 21 21 Si 1.86801 * 119.99921 * 185.07738 * 19 17 16 22 22 H 1.48500 * 109.46764 * 94.98359 * 21 19 17 23 23 H 1.48500 * 109.47020 * 214.98201 * 21 19 17 24 24 H 1.48499 * 109.47155 * 334.98698 * 21 19 17 25 25 C 1.47682 * 91.08342 * 24.28977 * 16 15 14 26 26 C 1.47348 * 121.05555 * 180.02562 * 10 8 7 27 27 H 1.09004 * 109.46468 * 205.66197 * 1 2 3 28 28 H 1.08999 * 109.46748 * 325.66401 * 1 2 3 29 29 H 1.09000 * 109.46905 * 85.66295 * 1 2 3 30 30 H 1.08995 * 117.50005 * 0.02562 * 4 2 1 31 31 H 1.08996 * 117.49736 * 214.97631 * 4 2 1 32 32 H 1.08996 * 109.47404 * 356.37537 * 7 5 4 33 33 H 1.09008 * 109.46878 * 236.37884 * 7 5 4 34 34 H 1.08991 * 109.59448 * 352.27428 * 11 10 8 35 35 H 1.09003 * 109.59247 * 112.72957 * 11 10 8 36 36 H 1.08999 * 109.49259 * 185.90786 * 12 11 10 37 37 H 1.08998 * 109.51318 * 65.84234 * 12 11 10 38 38 H 1.09005 * 113.79353 * 205.54226 * 15 14 13 39 39 H 1.08995 * 113.80213 * 337.02020 * 15 14 13 40 40 H 0.97000 * 119.99944 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.78665 * 221.44397 * 25 16 15 42 42 H 1.08993 * 113.89432 * 89.98979 * 25 16 15 43 43 H 1.09005 * 109.74172 * 250.97050 * 26 10 8 44 44 H 1.09001 * 109.74277 * 11.64335 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1213 0.7645 5 6 2.2366 -1.1206 -0.7655 6 1 1.6113 -1.8577 -1.2695 7 6 3.5490 -0.7753 -1.4718 8 6 4.0218 -1.9668 -2.2642 9 8 3.3725 -2.9912 -2.2644 10 7 5.1654 -1.8936 -2.9735 11 6 5.9673 -0.6602 -2.9955 12 6 6.2287 -0.2695 -4.4539 13 8 6.8175 -1.3768 -5.1431 14 6 6.0055 -2.5477 -5.1577 15 6 4.7968 -2.4500 -6.0983 16 7 5.6807 -3.0361 -7.1259 17 6 5.7044 -3.0166 -8.4949 18 1 6.5371 -3.4524 -9.0268 19 6 4.6580 -2.4366 -9.1990 20 7 3.6931 -1.8177 -8.5525 21 14 4.6196 -2.5347 -11.0640 22 1 3.7902 -3.6936 -11.4817 23 1 4.0360 -1.2846 -11.6135 24 1 6.0019 -2.7040 -11.5794 25 6 6.5283 -3.6525 -6.0854 26 6 5.6489 -3.0442 -3.7568 27 1 -0.3632 -0.9264 0.4451 28 1 -0.3633 0.8486 0.5797 29 1 -0.3633 0.0777 -1.0247 30 1 1.6114 -1.8592 1.2671 31 1 3.1716 -0.8757 1.2678 32 1 4.3022 -0.5104 -0.7298 33 1 3.3890 0.0678 -2.1440 34 1 5.4216 0.1395 -2.4950 35 1 6.9162 -0.8321 -2.4874 36 1 6.9085 0.5819 -4.4861 37 1 5.2872 -0.0016 -4.9334 38 1 3.9652 -3.0949 -5.8141 39 1 4.4892 -1.4270 -6.3145 40 1 2.9617 -1.4127 -9.0444 41 1 7.5965 -3.5847 -6.2914 42 1 6.2134 -4.6551 -5.7962 43 1 6.5329 -3.4684 -3.2806 44 1 4.8667 -3.8005 -3.8214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053410351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:12 Heat of formation + Delta-G solvation = -14.370271 kcal Electronic energy + Delta-G solvation = -24509.138092 eV Core-core repulsion = 21042.621600 eV Total energy + Delta-G solvation = -3466.516492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75069 -40.30521 -38.52146 -37.72659 -35.72680 -34.32722 -32.08013 -31.06343 -29.42013 -28.69039 -27.17750 -26.87753 -24.64509 -23.68200 -22.30221 -21.24283 -20.62741 -19.93181 -18.84032 -18.18461 -17.62979 -17.13476 -16.80021 -16.62355 -15.98817 -15.75777 -15.72169 -15.18296 -15.02310 -14.91020 -14.63672 -14.19198 -14.05428 -13.91387 -13.44067 -13.29235 -13.16969 -12.97608 -12.90706 -12.79304 -12.52148 -12.25073 -12.16267 -12.06450 -11.94631 -11.74496 -11.44326 -10.99630 -10.93394 -10.83878 -10.79641 -10.52180 -9.52380 -8.96793 -7.95229 -5.28913 1.42069 1.45109 1.54041 1.61056 1.88844 2.43648 2.64575 2.86804 3.21997 3.33129 3.47884 3.62046 3.72569 3.78946 3.96329 3.98992 4.11847 4.19249 4.33666 4.41086 4.46382 4.52525 4.58299 4.61147 4.64107 4.69412 4.76722 4.80854 4.89602 4.93607 4.95665 4.96164 5.00381 5.11952 5.17958 5.21529 5.32062 5.36559 5.44078 5.49602 5.85129 6.32456 6.39205 6.85421 7.14964 7.55168 8.49304 9.22298 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.003831 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.042979 B = 7307.042100 C = 8015.852297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.140 4.140 3 H 0.125 0.875 4 C -0.168 4.168 5 C -0.161 4.161 6 H 0.081 0.919 7 C -0.097 4.097 8 C 0.510 3.490 9 O -0.587 6.587 10 N -0.616 5.616 11 C 0.079 3.921 12 C 0.037 3.963 13 O -0.363 6.363 14 C 0.080 3.920 15 C 0.155 3.845 16 N -0.635 5.635 17 C -0.235 4.235 18 H 0.087 0.913 19 C -0.069 4.069 20 N -0.956 5.956 21 Si 0.982 3.018 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.264 1.264 25 C 0.133 3.867 26 C 0.107 3.893 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.031 0.969 38 H 0.007 0.993 39 H 0.036 0.964 40 H 0.248 0.752 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 7.224 20.537 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 H 0.142 0.858 4 C -0.205 4.205 5 C -0.180 4.180 6 H 0.099 0.901 7 C -0.136 4.136 8 C 0.300 3.700 9 O -0.467 6.467 10 N -0.350 5.350 11 C -0.043 4.043 12 C -0.040 4.040 13 O -0.281 6.281 14 C 0.038 3.962 15 C 0.029 3.971 16 N -0.361 5.361 17 C -0.363 4.363 18 H 0.105 0.895 19 C -0.261 4.261 20 N -0.605 5.605 21 Si 0.809 3.191 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.188 1.188 25 C 0.008 3.992 26 C -0.017 4.017 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.050 0.950 38 H 0.025 0.975 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.418 6.776 20.141 21.387 hybrid contribution -0.858 -0.420 -1.460 1.745 sum 1.560 6.356 18.681 19.794 Atomic orbital electron populations 1.21413 0.92884 1.02357 1.01811 1.22539 0.95480 0.94818 1.03011 0.85756 1.23286 1.03254 1.01173 0.92755 1.22073 0.98201 1.02890 0.94849 0.90078 1.21278 0.97407 0.95138 0.99811 1.21393 0.79124 0.90392 0.79045 1.90663 1.56146 1.34506 1.65366 1.48340 1.24060 1.14812 1.47740 1.22671 0.97734 0.86613 0.97249 1.23214 0.99548 0.89743 0.91517 1.87881 1.42534 1.20873 1.76800 1.23154 0.92504 0.88024 0.92540 1.22439 0.91821 0.96605 0.86204 1.46174 1.30597 1.58652 1.00682 1.19458 1.03824 1.32205 0.80816 0.89489 1.25714 0.96571 1.00940 1.02897 1.70046 1.13434 1.41370 1.35621 0.85010 0.78104 0.76657 0.79289 1.21488 1.21952 1.18798 1.22720 0.96660 0.94141 0.85694 1.21958 1.00515 0.89353 0.89836 0.93029 0.90514 0.92901 0.89320 0.87045 0.85335 0.86917 0.85262 0.87809 0.84678 0.95009 0.97514 0.94547 0.94328 0.91418 0.91391 0.88438 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 10.19 71.98 0.73 -1.26 16 2 C -0.14 -2.20 6.13 -10.79 -0.07 -2.26 16 3 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.17 -2.75 9.82 30.59 0.30 -2.45 16 5 C -0.16 -3.45 5.13 -10.79 -0.06 -3.51 16 6 H 0.08 2.37 7.30 -2.38 -0.02 2.35 16 7 C -0.10 -1.84 4.35 29.85 0.13 -1.71 16 8 C 0.51 14.95 7.71 87.66 0.68 15.63 16 9 O -0.59 -22.88 15.06 -3.04 -0.05 -22.93 16 10 N -0.62 -17.05 3.03 -817.90 -2.48 -19.53 16 11 C 0.08 1.51 6.51 86.34 0.56 2.07 16 12 C 0.04 0.99 6.88 72.06 0.50 1.48 16 13 O -0.36 -13.45 10.52 -148.98 -1.57 -15.02 16 14 C 0.08 3.14 1.21 -10.51 -0.01 3.12 16 15 C 0.16 8.02 6.56 86.31 0.57 8.58 16 16 N -0.63 -34.68 3.70 -729.16 -2.70 -37.38 16 17 C -0.23 -13.85 10.70 84.04 0.90 -12.95 16 18 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 20 N -0.96 -60.52 11.51 21.65 0.25 -60.27 16 21 Si 0.98 47.35 29.56 68.60 2.03 49.38 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.13 5.62 8.33 86.30 0.72 6.34 16 26 C 0.11 3.50 5.78 86.17 0.50 4.00 16 27 H 0.05 0.84 7.90 -2.39 -0.02 0.82 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.52 8.05 -2.39 -0.02 1.50 16 31 H 0.11 1.39 8.03 -2.39 -0.02 1.37 16 32 H 0.13 1.49 7.73 -2.39 -0.02 1.47 16 33 H 0.11 1.80 7.68 -2.38 -0.02 1.78 16 34 H 0.13 1.48 6.02 -2.39 -0.01 1.46 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.03 1.04 7.19 -2.39 -0.02 1.02 16 38 H 0.01 0.40 7.94 -2.38 -0.02 0.38 16 39 H 0.04 2.10 6.50 -2.39 -0.02 2.08 16 40 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.07 2.63 8.09 -2.39 -0.02 2.62 16 43 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 44 H 0.08 2.94 6.91 -2.39 -0.02 2.92 16 Total: -1.00 -80.53 351.97 2.38 -78.15 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.98 Total: 14.12 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.91 Total: 13.47 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -4.92 Total: -117.18 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.61 Total: -37.95 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -80.53 2.38 -78.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053410351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.781 kcal (2) G-P(sol) polarization free energy of solvation -80.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds