Wall clock time and date at job start Tue Mar 31 2020 06:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 115.56270 * 2 1 4 4 C 1.53004 * 117.49722 * 214.31354 * 2 1 3 5 5 C 1.52997 * 59.99927 * 252.50830 * 4 2 1 6 6 H 1.08997 * 117.49840 * 252.48655 * 5 4 2 7 7 C 1.52997 * 117.49832 * 107.49176 * 5 4 2 8 8 C 1.50700 * 109.47397 * 116.38668 * 7 5 4 9 9 O 1.21281 * 119.99615 * 0.02562 * 8 7 5 10 10 N 1.34775 * 119.99904 * 179.97438 * 8 7 5 11 11 C 1.47134 * 121.06606 * 359.97438 * 10 8 7 12 12 C 1.53222 * 108.73043 * 127.72223 * 11 10 8 13 13 O 1.43120 * 109.35234 * 54.19749 * 12 11 10 14 14 C 1.42352 * 113.99214 * 300.22028 * 13 12 11 15 15 C 1.52920 * 114.29764 * 285.05377 * 14 13 12 16 16 N 1.47169 * 87.84436 * 271.72005 * 15 14 13 17 17 C 1.36931 * 135.99841 * 153.32289 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72289 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.47183 * 88.00012 * 333.57683 * 16 15 14 26 26 C 1.47367 * 121.05749 * 180.02562 * 10 8 7 27 27 H 1.09005 * 109.46919 * 274.30686 * 1 2 3 28 28 H 1.08997 * 109.47361 * 34.30694 * 1 2 3 29 29 H 1.09000 * 109.46936 * 154.31038 * 1 2 3 30 30 H 1.09003 * 117.49663 * 145.01367 * 4 2 1 31 31 H 1.09001 * 117.51725 * 359.97438 * 4 2 1 32 32 H 1.09009 * 109.46949 * 356.38996 * 7 5 4 33 33 H 1.08998 * 109.47141 * 236.39359 * 7 5 4 34 34 H 1.09002 * 109.59044 * 247.50031 * 11 10 8 35 35 H 1.08997 * 109.58974 * 7.94628 * 11 10 8 36 36 H 1.08997 * 109.48996 * 174.15976 * 12 11 10 37 37 H 1.08999 * 109.49308 * 294.21041 * 12 11 10 38 38 H 1.09002 * 113.49216 * 156.97795 * 15 14 13 39 39 H 1.08996 * 113.48942 * 26.46298 * 15 14 13 40 40 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 41 41 H 1.08995 * 113.48989 * 141.16477 * 25 16 15 42 42 H 1.08998 * 113.48981 * 271.67907 * 25 16 15 43 43 H 1.09007 * 109.74356 * 108.59231 * 26 10 8 44 44 H 1.08999 * 109.78786 * 347.89302 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 3.1717 -0.8756 1.2681 7 6 1.3589 -2.1562 1.4713 8 6 2.2302 -3.0968 2.2634 9 8 3.4344 -2.9530 2.2632 10 7 1.6710 -4.0972 2.9726 11 6 0.2128 -4.2921 2.9907 12 6 -0.0936 -5.7478 2.6236 13 8 0.6349 -6.6198 3.4938 14 6 2.0472 -6.4529 3.4306 15 6 2.6948 -7.0408 2.1762 16 7 2.8143 -8.3151 2.9027 17 6 2.8725 -9.6405 2.5636 18 1 2.8276 -9.9348 1.5254 19 6 2.9955 -10.6055 3.5539 20 7 3.0507 -10.2468 4.8190 21 14 3.0826 -12.4131 3.0908 22 1 4.2606 -12.6440 2.2167 23 1 3.2106 -13.2338 4.3217 24 1 1.8452 -12.7986 2.3660 25 6 2.8375 -7.5404 4.1539 26 6 2.5007 -5.0300 3.7557 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8488 -0.5792 29 1 -0.3633 -0.9261 -0.4455 30 1 3.1715 -0.8751 -1.2685 31 1 1.6115 -1.8589 -1.2681 32 1 0.7949 -2.7215 0.7293 33 1 0.6675 -1.6483 2.1436 34 1 -0.1723 -4.0776 3.9877 35 1 -0.2540 -3.6260 2.2651 36 1 -1.1620 -5.9335 2.7339 37 1 0.2031 -5.9327 1.5912 38 1 3.6558 -6.5888 1.9308 39 1 2.0203 -7.0897 1.3214 40 1 3.1363 -10.9212 5.5110 41 1 2.2833 -8.0105 4.9663 42 1 3.8376 -7.2256 4.4515 43 1 2.3691 -4.8352 4.8202 44 1 3.5495 -4.9067 3.4858 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053410353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:18 Heat of formation + Delta-G solvation = 13.786156 kcal Electronic energy + Delta-G solvation = -24501.790551 eV Core-core repulsion = 21036.495014 eV Total energy + Delta-G solvation = -3465.295538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52630 -39.14681 -37.75048 -36.32964 -34.46518 -32.29141 -30.70139 -29.75649 -28.56134 -27.64337 -25.83754 -24.90836 -23.31798 -22.24773 -21.60962 -20.13078 -19.07553 -18.71713 -17.35526 -16.80963 -16.24237 -16.02447 -15.44269 -15.13703 -14.93064 -14.44596 -14.32556 -14.01801 -13.84063 -13.56378 -13.40338 -13.19848 -12.88338 -12.58138 -12.30975 -12.24527 -12.04611 -11.71780 -11.42112 -11.33291 -11.10601 -10.83764 -10.80441 -10.76362 -10.17074 -10.14369 -10.08680 -10.02051 -9.64105 -9.56665 -9.11259 -8.81473 -8.30211 -6.86771 -5.73833 -3.05769 2.66381 2.91774 3.42549 3.45835 3.47556 3.54467 4.05351 4.35715 4.41092 4.46901 4.61338 4.74851 4.85315 4.93304 5.01960 5.08894 5.19745 5.22655 5.23075 5.27552 5.37573 5.44585 5.49553 5.56172 5.60580 5.69441 5.73390 5.74649 5.77298 5.86665 6.01334 6.05816 6.12760 6.32161 6.38652 6.51459 6.58234 6.95416 7.17781 7.42190 7.50954 7.82798 7.99827 8.20611 9.05403 9.72467 10.63667 11.44119 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.003357 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.430974 B = 8339.807159 C = 8461.596483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.157 4.157 3 H 0.103 0.897 4 C -0.174 4.174 5 C -0.135 4.135 6 H 0.118 0.882 7 C -0.107 4.107 8 C 0.517 3.483 9 O -0.539 6.539 10 N -0.613 5.613 11 C 0.073 3.927 12 C 0.044 3.956 13 O -0.332 6.332 14 C 0.046 3.954 15 C 0.102 3.898 16 N -0.600 5.600 17 C -0.216 4.216 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.175 3.825 26 C 0.103 3.897 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.255 0.745 41 H 0.083 0.917 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 20.007 -6.346 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.175 4.175 3 H 0.121 0.879 4 C -0.211 4.211 5 C -0.154 4.154 6 H 0.136 0.864 7 C -0.147 4.147 8 C 0.305 3.695 9 O -0.416 6.416 10 N -0.347 5.347 11 C -0.050 4.050 12 C -0.034 4.034 13 O -0.249 6.249 14 C 0.004 3.996 15 C -0.025 4.025 16 N -0.325 5.325 17 C -0.343 4.343 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.020 4.020 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.557 19.551 -6.163 21.847 hybrid contribution 0.158 -0.811 -0.433 0.933 sum -7.399 18.740 -6.596 21.200 Atomic orbital electron populations 1.21364 0.92932 1.01978 1.01799 1.22420 0.95322 0.94551 1.05179 0.87858 1.23168 1.02479 1.01253 0.94151 1.22139 1.01116 0.98223 0.93908 0.86428 1.21202 0.98035 0.95938 0.99511 1.20546 0.88861 0.80968 0.79103 1.90682 1.15074 1.72237 1.63588 1.48253 1.07328 1.30367 1.48787 1.22447 0.80758 0.98804 1.03002 1.22879 0.97386 0.88215 0.94905 1.88036 1.16175 1.58718 1.62015 1.23317 0.82341 0.92743 1.01195 1.22870 0.96970 0.88072 0.94582 1.45337 1.85649 0.99427 1.02131 1.18840 1.43837 0.79022 0.92650 0.90196 1.24778 1.02276 0.97991 0.95262 1.69800 1.55963 1.32341 0.98536 0.86167 0.77907 0.84480 0.76999 1.21197 1.21503 1.21077 1.21938 0.94796 0.85751 0.92683 1.22172 0.96750 0.87737 0.95348 0.92157 0.92239 0.92447 0.88798 0.88807 0.88915 0.88634 0.90410 0.89295 0.88061 0.92888 0.94148 0.94255 0.93543 0.89914 0.93904 0.90846 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.16 -1.23 6.41 -90.62 -0.58 -1.81 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.17 -1.56 9.82 -26.73 -0.26 -1.82 16 5 C -0.14 -1.36 5.42 -90.62 -0.49 -1.85 16 6 H 0.12 1.41 7.30 -51.93 -0.38 1.04 16 7 C -0.11 -1.03 3.43 -27.88 -0.10 -1.13 16 8 C 0.52 7.20 7.71 -10.99 -0.08 7.11 16 9 O -0.54 -9.53 15.06 5.56 0.08 -9.45 16 10 N -0.61 -8.49 3.03 -172.43 -0.52 -9.01 16 11 C 0.07 0.79 6.50 -3.58 -0.02 0.76 16 12 C 0.04 0.59 6.90 37.27 0.26 0.85 16 13 O -0.33 -6.42 10.53 -35.23 -0.37 -6.79 16 14 C 0.05 0.91 1.27 -90.92 -0.12 0.79 16 15 C 0.10 2.23 7.91 -8.20 -0.06 2.17 16 16 N -0.60 -16.05 3.79 -184.92 -0.70 -16.75 16 17 C -0.22 -6.27 10.74 -15.06 -0.16 -6.43 16 18 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -27.75 11.52 55.49 0.64 -27.11 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.17 4.22 6.78 -8.33 -0.06 4.16 16 26 C 0.10 1.70 5.84 -3.65 -0.02 1.67 16 27 H 0.06 0.35 7.83 -51.93 -0.41 -0.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.79 7.94 -51.93 -0.41 0.38 16 32 H 0.09 0.77 7.43 -51.92 -0.39 0.38 16 33 H 0.10 0.73 7.61 -51.93 -0.40 0.33 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.66 6.03 -51.93 -0.31 0.34 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.74 7.30 -51.93 -0.38 0.36 16 38 H 0.04 0.88 7.93 -51.93 -0.41 0.47 16 39 H 0.04 0.84 7.36 -51.93 -0.38 0.46 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 2.23 7.17 -51.93 -0.37 1.86 16 42 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 43 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.10 1.80 6.90 -51.93 -0.36 1.44 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -34.28 350.03 -9.18 -43.46 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.11 Total: -0.91 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.45 Total: 3.76 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.58 Total: -52.87 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.29 Total: -16.24 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.28 -9.18 -43.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053410353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.246 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds