Wall clock time and date at job start Tue Mar 31 2020 06:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 115.56270 * 2 1 4 4 C 1.53004 * 117.49722 * 214.31354 * 2 1 3 5 5 C 1.52997 * 59.99927 * 252.50830 * 4 2 1 6 6 H 1.08997 * 117.49840 * 252.48655 * 5 4 2 7 7 C 1.52997 * 117.49832 * 107.49176 * 5 4 2 8 8 C 1.50700 * 109.47397 * 116.38668 * 7 5 4 9 9 O 1.21281 * 119.99615 * 0.02562 * 8 7 5 10 10 N 1.34775 * 119.99904 * 179.97438 * 8 7 5 11 11 C 1.47134 * 121.06606 * 359.97438 * 10 8 7 12 12 C 1.53222 * 108.73043 * 127.72223 * 11 10 8 13 13 O 1.43120 * 109.35234 * 54.19749 * 12 11 10 14 14 C 1.42352 * 113.99214 * 300.22028 * 13 12 11 15 15 C 1.52920 * 114.29764 * 285.05377 * 14 13 12 16 16 N 1.47169 * 87.84436 * 271.72005 * 15 14 13 17 17 C 1.36931 * 135.99841 * 153.32289 * 16 15 14 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72289 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.47183 * 88.00012 * 333.57683 * 16 15 14 26 26 C 1.47367 * 121.05749 * 180.02562 * 10 8 7 27 27 H 1.09005 * 109.46919 * 274.30686 * 1 2 3 28 28 H 1.08997 * 109.47361 * 34.30694 * 1 2 3 29 29 H 1.09000 * 109.46936 * 154.31038 * 1 2 3 30 30 H 1.09003 * 117.49663 * 145.01367 * 4 2 1 31 31 H 1.09001 * 117.51725 * 359.97438 * 4 2 1 32 32 H 1.09009 * 109.46949 * 356.38996 * 7 5 4 33 33 H 1.08998 * 109.47141 * 236.39359 * 7 5 4 34 34 H 1.09002 * 109.59044 * 247.50031 * 11 10 8 35 35 H 1.08997 * 109.58974 * 7.94628 * 11 10 8 36 36 H 1.08997 * 109.48996 * 174.15976 * 12 11 10 37 37 H 1.08999 * 109.49308 * 294.21041 * 12 11 10 38 38 H 1.09002 * 113.49216 * 156.97795 * 15 14 13 39 39 H 1.08996 * 113.48942 * 26.46298 * 15 14 13 40 40 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 41 41 H 1.08995 * 113.48989 * 141.16477 * 25 16 15 42 42 H 1.08998 * 113.48981 * 271.67907 * 25 16 15 43 43 H 1.09007 * 109.74356 * 108.59231 * 26 10 8 44 44 H 1.08999 * 109.78786 * 347.89302 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 3.1717 -0.8756 1.2681 7 6 1.3589 -2.1562 1.4713 8 6 2.2302 -3.0968 2.2634 9 8 3.4344 -2.9530 2.2632 10 7 1.6710 -4.0972 2.9726 11 6 0.2128 -4.2921 2.9907 12 6 -0.0936 -5.7478 2.6236 13 8 0.6349 -6.6198 3.4938 14 6 2.0472 -6.4529 3.4306 15 6 2.6948 -7.0408 2.1762 16 7 2.8143 -8.3151 2.9027 17 6 2.8725 -9.6405 2.5636 18 1 2.8276 -9.9348 1.5254 19 6 2.9955 -10.6055 3.5539 20 7 3.0507 -10.2468 4.8190 21 14 3.0826 -12.4131 3.0908 22 1 4.2606 -12.6440 2.2167 23 1 3.2106 -13.2338 4.3217 24 1 1.8452 -12.7986 2.3660 25 6 2.8375 -7.5404 4.1539 26 6 2.5007 -5.0300 3.7557 27 1 -0.3633 0.0772 1.0248 28 1 -0.3634 0.8488 -0.5792 29 1 -0.3633 -0.9261 -0.4455 30 1 3.1715 -0.8751 -1.2685 31 1 1.6115 -1.8589 -1.2681 32 1 0.7949 -2.7215 0.7293 33 1 0.6675 -1.6483 2.1436 34 1 -0.1723 -4.0776 3.9877 35 1 -0.2540 -3.6260 2.2651 36 1 -1.1620 -5.9335 2.7339 37 1 0.2031 -5.9327 1.5912 38 1 3.6558 -6.5888 1.9308 39 1 2.0203 -7.0897 1.3214 40 1 3.1363 -10.9212 5.5110 41 1 2.2833 -8.0105 4.9663 42 1 3.8376 -7.2256 4.4515 43 1 2.3691 -4.8352 4.8202 44 1 3.5495 -4.9067 3.4858 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053410353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:18 Heat of formation + Delta-G solvation = -9.057541 kcal Electronic energy + Delta-G solvation = -24502.781128 eV Core-core repulsion = 21036.495014 eV Total energy + Delta-G solvation = -3466.286115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.82710 -40.40625 -38.60542 -37.81833 -35.74530 -34.33264 -31.95966 -30.79504 -29.40479 -28.99982 -27.35965 -26.72770 -24.63207 -23.76820 -22.48125 -21.14389 -20.42197 -19.69439 -18.82937 -18.37242 -17.52401 -17.17870 -16.98948 -16.47072 -16.10009 -15.97264 -15.74368 -15.19180 -15.06963 -14.69472 -14.66153 -14.24319 -14.10219 -13.78170 -13.43354 -13.37857 -13.12569 -12.90409 -12.82902 -12.74812 -12.52858 -12.36268 -12.13548 -12.02052 -11.96697 -11.70912 -11.44125 -11.00433 -10.86771 -10.78741 -10.72217 -10.57048 -9.55401 -8.97981 -7.93417 -5.27934 1.43522 1.48234 1.54385 1.61572 1.85479 2.44340 2.67981 2.87437 3.26624 3.32070 3.44514 3.55942 3.73595 3.83198 3.97623 3.98859 4.07609 4.17051 4.29840 4.36610 4.49104 4.53003 4.56366 4.62456 4.65429 4.67304 4.71761 4.75110 4.88186 4.95844 4.98184 5.03682 5.07114 5.11114 5.16559 5.28375 5.32011 5.37332 5.41960 5.51758 5.85897 6.35824 6.41422 6.85446 7.14313 7.54588 8.53142 9.24202 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.003357 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.430974 B = 8339.807159 C = 8461.596483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.137 4.137 3 H 0.106 0.894 4 C -0.183 4.183 5 C -0.155 4.155 6 H 0.089 0.911 7 C -0.095 4.095 8 C 0.512 3.488 9 O -0.585 6.585 10 N -0.614 5.614 11 C 0.077 3.923 12 C 0.034 3.966 13 O -0.365 6.365 14 C 0.081 3.919 15 C 0.104 3.896 16 N -0.631 5.631 17 C -0.236 4.236 18 H 0.083 0.917 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.985 3.015 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.168 3.832 26 C 0.112 3.888 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.629 21.533 -7.640 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.155 4.155 3 H 0.124 0.876 4 C -0.219 4.219 5 C -0.174 4.174 6 H 0.107 0.893 7 C -0.135 4.135 8 C 0.302 3.698 9 O -0.465 6.465 10 N -0.348 5.348 11 C -0.045 4.045 12 C -0.042 4.042 13 O -0.283 6.283 14 C 0.039 3.961 15 C -0.022 4.022 16 N -0.357 5.357 17 C -0.364 4.364 18 H 0.101 0.899 19 C -0.258 4.258 20 N -0.599 5.599 21 Si 0.812 3.188 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.200 1.200 25 C 0.042 3.958 26 C -0.012 4.012 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.080 21.117 -7.488 24.568 hybrid contribution 0.919 -1.227 -0.074 1.535 sum -9.161 19.889 -7.561 23.167 Atomic orbital electron populations 1.21422 0.91146 1.02797 1.02769 1.22510 0.96551 0.93903 1.02564 0.87615 1.23255 1.02801 1.02375 0.93517 1.22057 1.00871 1.00065 0.94364 0.89309 1.21247 0.97447 0.94993 0.99767 1.21395 0.88802 0.81015 0.78542 1.90670 1.17438 1.73398 1.65017 1.48350 1.08500 1.29665 1.48248 1.22680 0.78759 0.97632 1.05438 1.23287 0.98255 0.89087 0.93613 1.87973 1.15566 1.61143 1.63627 1.22697 0.82735 0.93089 0.97628 1.22954 0.97276 0.86344 0.95656 1.45692 1.85839 1.00074 1.04076 1.19256 1.43471 0.80645 0.93021 0.89921 1.25694 1.02349 1.02514 0.95203 1.70005 1.57080 1.33409 0.99434 0.85066 0.78300 0.78771 0.76642 1.20283 1.21643 1.20011 1.21884 0.95103 0.87310 0.91498 1.21813 0.96368 0.86534 0.96494 0.91066 0.91391 0.91748 0.89475 0.87942 0.86633 0.85603 0.88767 0.84734 0.84967 0.93389 0.94132 0.93683 0.94041 0.93409 0.94442 0.89670 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.19 71.98 0.66 -0.39 16 2 C -0.14 -1.80 6.41 -10.79 -0.07 -1.87 16 3 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.18 -2.96 9.82 30.59 0.30 -2.66 16 5 C -0.15 -2.84 5.42 -10.80 -0.06 -2.90 16 6 H 0.09 2.16 7.30 -2.39 -0.02 2.14 16 7 C -0.10 -1.50 3.43 29.85 0.10 -1.40 16 8 C 0.51 13.33 7.71 87.66 0.68 14.00 16 9 O -0.59 -20.79 15.06 -3.03 -0.05 -20.84 16 10 N -0.61 -15.65 3.03 -817.84 -2.48 -18.12 16 11 C 0.08 1.33 6.50 86.33 0.56 1.89 16 12 C 0.03 0.82 6.90 72.06 0.50 1.32 16 13 O -0.36 -13.82 10.53 -148.98 -1.57 -15.39 16 14 C 0.08 3.20 1.27 -10.99 -0.01 3.19 16 15 C 0.10 4.61 7.91 83.32 0.66 5.27 16 16 N -0.63 -34.77 3.79 -739.83 -2.80 -37.58 16 17 C -0.24 -14.00 10.74 84.04 0.90 -13.10 16 18 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 19 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 20 N -0.95 -59.30 11.52 21.65 0.25 -59.05 16 21 Si 0.99 47.02 29.55 68.60 2.03 49.05 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 25 C 0.17 8.50 6.78 83.23 0.56 9.07 16 26 C 0.11 3.66 5.84 86.16 0.50 4.17 16 27 H 0.07 0.48 7.83 -2.38 -0.02 0.46 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.48 7.90 -2.39 -0.02 0.46 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.46 7.94 -2.39 -0.02 1.45 16 32 H 0.12 1.34 7.43 -2.38 -0.02 1.32 16 33 H 0.13 1.25 7.61 -2.39 -0.02 1.23 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.13 1.15 6.03 -2.39 -0.01 1.14 16 36 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.05 1.21 7.30 -2.39 -0.02 1.19 16 38 H 0.04 1.81 7.93 -2.39 -0.02 1.79 16 39 H 0.04 1.92 7.36 -2.39 -0.02 1.91 16 40 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 41 H 0.05 2.72 7.17 -2.39 -0.02 2.70 16 42 H 0.04 1.89 8.09 -2.39 -0.02 1.88 16 43 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 44 H 0.08 3.08 6.90 -2.39 -0.02 3.07 16 Total: -1.00 -78.49 350.03 2.12 -76.37 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.98 Total: 12.31 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.75 Total: 13.24 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -5.03 Total: -114.75 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.61 Total: -36.23 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -78.49 2.12 -76.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053410353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.317 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds