Wall clock time and date at job start Tue Mar 31 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 115.56161 * 2 1 4 4 C 1.53000 * 117.49663 * 214.30861 * 2 1 3 5 5 C 1.52999 * 117.49822 * 145.68740 * 2 1 3 6 6 H 1.09008 * 117.51828 * 0.02562 * 5 2 1 7 7 C 1.50704 * 117.50066 * 214.98140 * 5 2 1 8 8 O 1.21283 * 119.99607 * 359.97438 * 7 5 2 9 9 N 1.34778 * 120.00157 * 179.71209 * 7 5 2 10 10 C 1.46492 * 119.99952 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47420 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.52477 * 303.64196 * 11 10 9 13 13 C 1.55054 * 110.59153 * 180.66858 * 11 10 9 14 14 C 1.54998 * 102.11699 * 204.85704 * 13 11 10 15 15 C 1.53429 * 103.84944 * 20.85860 * 14 13 11 16 16 C 1.53218 * 115.02357 * 132.30507 * 15 14 13 17 17 N 1.47722 * 85.90208 * 93.03827 * 16 15 14 18 18 C 1.36934 * 134.43260 * 204.06849 * 17 16 15 19 19 H 1.07997 * 120.00069 * 173.56750 * 18 17 16 20 20 C 1.38817 * 120.00138 * 353.57384 * 18 17 16 21 21 N 1.31621 * 119.99520 * 5.08019 * 20 18 17 22 22 Si 1.86798 * 120.00118 * 185.08409 * 20 18 17 23 23 H 1.48498 * 109.47253 * 94.97970 * 22 20 18 24 24 H 1.48492 * 109.46834 * 214.98652 * 22 20 18 25 25 H 1.48504 * 109.47104 * 334.98351 * 22 20 18 26 26 C 1.47723 * 91.13338 * 24.11903 * 17 16 15 27 27 O 1.42966 * 108.17146 * 1.69352 * 15 14 13 28 28 H 1.08996 * 109.46523 * 274.31003 * 1 2 3 29 29 H 1.09001 * 109.46957 * 34.31484 * 1 2 3 30 30 H 1.08998 * 109.46709 * 154.31171 * 1 2 3 31 31 H 1.08999 * 117.49474 * 145.02214 * 4 2 1 32 32 H 1.08998 * 117.51813 * 359.97438 * 4 2 1 33 33 H 0.96995 * 119.99769 * 359.97438 * 9 7 5 34 34 H 1.09005 * 109.47070 * 299.99910 * 10 9 7 35 35 H 1.09007 * 109.47004 * 59.99539 * 10 9 7 36 36 H 1.09000 * 110.87469 * 323.01378 * 13 11 10 37 37 H 1.09000 * 110.87344 * 86.70525 * 13 11 10 38 38 H 1.08999 * 110.55360 * 262.26218 * 14 13 11 39 39 H 1.09000 * 110.55077 * 139.45074 * 14 13 11 40 40 H 1.08999 * 113.80400 * 207.28613 * 16 15 14 41 41 H 1.09001 * 113.80261 * 338.79353 * 16 15 14 42 42 H 0.97001 * 119.99596 * 180.02562 * 21 20 18 43 43 H 1.09001 * 113.80050 * 221.64261 * 26 17 16 44 44 H 1.08998 * 113.80500 * 90.12748 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 1.6115 -1.8589 1.2681 7 6 3.5293 -0.7811 1.4609 8 8 3.9720 0.3464 1.4009 9 7 4.1908 -1.7288 2.1544 10 6 5.4478 -1.3985 2.8303 11 6 5.9880 -2.6423 3.5389 12 1 5.2466 -3.0395 4.2322 13 6 7.3116 -2.3172 4.2781 14 6 7.9968 -3.7059 4.3445 15 6 7.3124 -4.5068 3.2291 16 6 8.2641 -5.2676 2.3000 17 7 8.0653 -6.4144 3.2096 18 6 8.7941 -7.5325 3.5159 19 1 8.4698 -8.1874 4.3110 20 6 9.9500 -7.8241 2.8046 21 7 10.4002 -6.9760 1.9044 22 14 10.8663 -9.4201 3.1250 23 1 10.4284 -10.4473 2.1462 24 1 12.3262 -9.1899 2.9816 25 1 10.5725 -9.8916 4.5022 26 6 6.7651 -5.8732 3.6554 27 8 6.3739 -3.6489 2.5756 28 1 -0.3632 0.0772 1.0248 29 1 -0.3633 0.8488 -0.5793 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1715 -0.8752 -1.2682 32 1 1.6115 -1.8589 -1.2680 33 1 3.8345 -2.6295 2.2058 34 1 6.1755 -1.0535 2.0958 35 1 5.2702 -0.6115 3.5633 36 1 7.9145 -1.6137 3.7038 37 1 7.1134 -1.9337 5.2789 38 1 7.8218 -4.1730 5.3137 39 1 9.0654 -3.6150 4.1500 40 1 7.8665 -5.4269 1.2977 41 1 9.2823 -4.8784 2.2988 42 1 11.2077 -7.1799 1.4071 43 1 6.5955 -5.9639 4.7283 44 1 5.9189 -6.2138 3.0588 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053643120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:53 Heat of formation + Delta-G solvation = -7.375167 kcal Electronic energy + Delta-G solvation = -23584.978211 eV Core-core repulsion = 20118.765050 eV Total energy + Delta-G solvation = -3466.213161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22981 -39.69764 -37.19940 -36.39028 -34.48142 -32.09290 -31.84471 -29.68302 -28.74893 -27.01928 -25.01446 -24.66365 -23.07328 -21.75773 -21.25689 -21.03530 -19.97007 -18.79473 -17.55440 -16.79153 -16.57449 -16.00358 -15.33075 -15.03852 -14.76027 -14.54552 -14.28324 -13.94214 -13.75992 -13.51793 -13.31972 -13.01238 -12.86993 -12.40864 -12.26976 -12.01214 -11.77031 -11.67904 -11.41223 -11.22239 -10.99775 -10.89112 -10.64730 -10.60298 -10.53925 -10.34346 -10.22666 -10.02122 -9.85393 -9.61835 -9.11942 -8.89579 -8.79982 -6.91953 -5.82204 -3.13878 2.41229 3.01661 3.37108 3.41914 3.44368 3.60932 4.00329 4.43779 4.47477 4.51722 4.59123 4.75423 4.87926 4.94658 5.03650 5.06446 5.14635 5.22715 5.35396 5.40718 5.44464 5.46545 5.48700 5.56607 5.63674 5.71163 5.73659 5.75277 5.94190 6.04013 6.04812 6.28802 6.35169 6.38802 6.47510 6.58669 6.69330 7.00090 7.19886 7.45031 7.49138 7.61243 7.92591 8.16247 9.00145 9.66083 10.55191 11.35862 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027704 B = 0.002818 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.432706 B = 9933.007519 C =10450.192942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.191 4.191 6 H 0.123 0.877 7 C 0.542 3.458 8 O -0.548 6.548 9 N -0.718 5.718 10 C 0.128 3.872 11 C 0.062 3.938 12 H 0.072 0.928 13 C -0.146 4.146 14 C -0.113 4.113 15 C 0.051 3.949 16 C 0.180 3.820 17 N -0.604 5.604 18 C -0.223 4.223 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.107 3.893 27 O -0.359 6.359 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.406 0.594 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.255 0.745 43 H 0.043 0.957 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 12.753 0.680 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.213 4.213 6 H 0.141 0.859 7 C 0.328 3.672 8 O -0.426 6.426 9 N -0.369 5.369 10 C 0.005 3.995 11 C 0.004 3.996 12 H 0.090 0.910 13 C -0.185 4.185 14 C -0.150 4.150 15 C 0.011 3.989 16 C 0.054 3.946 17 N -0.333 5.333 18 C -0.350 4.350 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.019 4.019 27 O -0.278 6.278 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.241 0.759 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.800 13.324 0.408 20.672 hybrid contribution 0.453 -1.581 0.334 1.678 sum -15.347 11.743 0.741 19.339 Atomic orbital electron populations 1.21402 0.92286 1.02229 1.02133 1.22376 0.95141 0.95098 1.01639 0.86546 1.23111 1.03194 1.01358 0.90833 1.22299 0.97745 1.05215 0.95994 0.85913 1.19654 0.84684 0.84629 0.78192 1.90683 1.68831 1.21221 1.61820 1.45852 1.24378 1.13846 1.52801 1.21456 0.85361 0.95951 0.96765 1.23314 0.96587 0.88797 0.90929 0.91008 1.23144 0.95884 0.98701 1.00723 1.22427 1.01071 0.92929 0.98603 1.24310 0.90520 0.88970 0.95108 1.22251 0.96359 0.83912 0.92029 1.45657 1.16115 1.23996 1.47500 1.18966 1.03359 0.98951 1.13767 0.90081 1.24844 0.98583 0.98658 0.98238 1.69836 1.23891 1.35277 1.27420 0.86107 0.78955 0.83090 0.77675 1.21561 1.21654 1.20527 1.23000 0.90675 0.90703 0.97550 1.88824 1.61650 1.41488 1.35801 0.91995 0.91716 0.92312 0.88172 0.87719 0.75917 0.90579 0.90402 0.90332 0.90452 0.90751 0.89875 0.94708 0.90784 0.93504 0.93851 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.19 37.16 0.38 -0.42 16 2 C -0.12 -1.10 5.92 -90.62 -0.54 -1.63 16 3 H 0.12 1.21 7.67 -51.93 -0.40 0.81 16 4 C -0.15 -1.28 9.88 -26.73 -0.26 -1.54 16 5 C -0.19 -1.82 5.91 -91.77 -0.54 -2.36 16 6 H 0.12 0.92 8.14 -51.92 -0.42 0.49 16 7 C 0.54 6.88 7.61 -10.98 -0.08 6.80 16 8 O -0.55 -8.86 16.26 5.56 0.09 -8.77 16 9 N -0.72 -8.40 5.54 -60.29 -0.33 -8.74 16 10 C 0.13 1.57 5.41 -4.05 -0.02 1.55 16 11 C 0.06 0.80 3.38 -25.64 -0.09 0.72 16 12 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.15 -1.85 6.60 -24.59 -0.16 -2.01 16 14 C -0.11 -1.84 6.46 -25.45 -0.16 -2.00 16 15 C 0.05 0.98 1.56 -90.28 -0.14 0.84 16 16 C 0.18 4.34 6.91 -3.27 -0.02 4.32 16 17 N -0.60 -15.53 3.68 -181.54 -0.67 -16.19 16 18 C -0.22 -6.22 10.69 -15.06 -0.16 -6.39 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -27.17 11.51 55.49 0.64 -26.53 16 22 Si 0.91 21.98 29.56 -169.99 -5.02 16.96 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.11 2.22 8.43 -3.25 -0.03 2.19 16 27 O -0.36 -6.16 10.98 -35.23 -0.39 -6.54 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.41 4.14 8.47 -40.82 -0.35 3.80 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 39 H 0.08 1.47 7.76 -51.93 -0.40 1.07 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.93 7.09 -51.93 -0.37 1.56 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.04 0.83 7.85 -51.93 -0.41 0.43 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -32.78 361.45 -9.51 -42.29 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.34 Total: 2.29 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.93 Total: -0.21 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.36 Total: -51.46 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.30 Total: -15.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.78 -9.51 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053643120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.918 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds