Wall clock time and date at job start Tue Mar 31 2020 06:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55337 * 2 1 4 4 C 1.52999 * 117.50264 * 145.70363 * 2 1 3 5 5 C 1.52994 * 117.50137 * 214.32853 * 2 1 3 6 6 H 1.09000 * 117.49794 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.50063 * 145.02144 * 5 2 1 8 8 O 1.21275 * 120.00075 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00056 * 179.97438 * 7 5 2 10 10 C 1.46499 * 120.00152 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47165 * 180.02562 * 10 9 7 12 12 H 1.08993 * 110.53076 * 305.69952 * 11 10 9 13 13 C 1.55050 * 110.59039 * 182.88753 * 11 10 9 14 14 C 1.55169 * 102.04707 * 204.97646 * 13 11 10 15 15 C 1.53433 * 103.90866 * 20.65270 * 14 13 11 16 16 C 1.53217 * 115.02519 * 132.43374 * 15 14 13 17 17 N 1.47717 * 85.89779 * 93.04346 * 16 15 14 18 18 C 1.36944 * 134.43266 * 204.07524 * 17 16 15 19 19 H 1.07999 * 120.00251 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99528 * 0.06277 * 18 17 16 21 21 N 1.31619 * 120.00407 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99601 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47262 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47139 * 119.99782 * 22 20 18 25 25 H 1.48498 * 109.46759 * 239.99833 * 22 20 18 26 26 C 1.47711 * 91.13472 * 24.12015 * 17 16 15 27 27 O 1.42978 * 108.16936 * 1.82694 * 15 14 13 28 28 H 1.09002 * 109.47153 * 205.67152 * 1 2 3 29 29 H 1.09001 * 109.46832 * 85.67343 * 1 2 3 30 30 H 1.09004 * 109.47261 * 325.67324 * 1 2 3 31 31 H 1.08994 * 117.50345 * 214.98309 * 4 2 1 32 32 H 1.09008 * 117.49719 * 0.02562 * 4 2 1 33 33 H 0.97002 * 120.00095 * 0.02562 * 9 7 5 34 34 H 1.09003 * 109.47382 * 300.00249 * 10 9 7 35 35 H 1.09002 * 109.47197 * 60.00191 * 10 9 7 36 36 H 1.09001 * 110.87547 * 323.02104 * 13 11 10 37 37 H 1.09007 * 110.87008 * 86.70516 * 13 11 10 38 38 H 1.08995 * 110.41271 * 262.10156 * 14 13 11 39 39 H 1.08993 * 110.75684 * 139.37761 * 14 13 11 40 40 H 1.08995 * 113.80755 * 207.28912 * 16 15 14 41 41 H 1.09004 * 113.80334 * 338.79606 * 16 15 14 42 42 H 0.96998 * 120.00054 * 180.02562 * 21 20 18 43 43 H 1.09003 * 113.80196 * 221.64195 * 26 17 16 44 44 H 1.09003 * 113.80720 * 90.13317 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6112 -1.8578 -1.2692 7 6 3.5293 -0.7806 -1.4610 8 8 3.9716 0.3471 -1.4014 9 7 4.1941 -1.7296 -2.1494 10 6 5.4506 -1.3989 -2.8262 11 6 5.9949 -2.6446 -3.5283 12 1 6.0857 -3.4714 -2.8240 13 6 7.3625 -2.3419 -4.1932 14 6 7.4148 -3.4033 -5.3239 15 6 5.9464 -3.7997 -5.5259 16 6 5.4769 -3.8265 -6.9841 17 7 5.8334 -5.2599 -6.9615 18 6 6.1754 -6.1779 -7.9184 19 1 6.3969 -7.1962 -7.6350 20 6 6.2380 -5.7993 -9.2524 21 7 5.9682 -4.5582 -9.5978 22 14 6.7038 -7.0518 -10.5578 23 1 6.9553 -8.3666 -9.9149 24 1 5.5941 -7.1837 -11.5356 25 1 7.9318 -6.6008 -11.2605 26 6 5.6722 -5.3070 -5.4940 27 8 5.1463 -3.0137 -4.6391 28 1 -0.3633 -0.9262 0.4452 29 1 -0.3633 0.0775 -1.0248 30 1 -0.3634 0.8487 0.5795 31 1 3.1715 -0.8755 1.2680 32 1 1.6113 -1.8591 1.2675 33 1 3.8402 -2.6315 -2.1974 34 1 5.2713 -0.6160 -3.5631 35 1 6.1768 -1.0482 -2.0929 36 1 7.3783 -1.3338 -4.6074 37 1 8.1787 -2.4849 -3.4850 38 1 8.0038 -4.2649 -5.0097 39 1 7.8244 -2.9739 -6.2382 40 1 4.4099 -3.6404 -7.1063 41 1 6.0942 -3.2302 -7.6560 42 1 6.0117 -4.2938 -10.5300 43 1 6.4444 -5.8838 -4.9849 44 1 4.6637 -5.5640 -5.1701 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053645102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:58 Heat of formation + Delta-G solvation = -7.123351 kcal Electronic energy + Delta-G solvation = -23563.819203 eV Core-core repulsion = 20097.616961 eV Total energy + Delta-G solvation = -3466.202242 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.23366 -39.69713 -37.21225 -36.39376 -34.48877 -32.08352 -31.83289 -29.67940 -28.74735 -27.01875 -25.00918 -24.67010 -23.08344 -21.76367 -21.26077 -21.05615 -19.97373 -18.78670 -17.57557 -16.79951 -16.58840 -15.93683 -15.24151 -15.19194 -14.81449 -14.55429 -14.20948 -13.91177 -13.78091 -13.49157 -13.31056 -13.08816 -12.81418 -12.42805 -12.29744 -12.00529 -11.77379 -11.69651 -11.40375 -11.21028 -10.98687 -10.88447 -10.63794 -10.62728 -10.53817 -10.35026 -10.22188 -10.01527 -9.86142 -9.61291 -9.12530 -8.90901 -8.79534 -6.92853 -5.80482 -3.13182 2.39664 3.02644 3.36853 3.41880 3.44854 3.57125 4.00678 4.42871 4.46719 4.49508 4.55354 4.75707 4.89605 4.95961 5.03509 5.06832 5.15116 5.23485 5.34990 5.41018 5.41804 5.46667 5.47785 5.56202 5.63247 5.68577 5.72909 5.76321 5.94471 6.03319 6.05358 6.29552 6.34905 6.38741 6.48676 6.58035 6.69467 6.99873 7.21668 7.44282 7.49658 7.61346 7.93327 8.15681 9.00769 9.66674 10.54819 11.37015 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.002774 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.851784 B =10089.860315 C =10540.813937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.150 4.150 5 C -0.191 4.191 6 H 0.125 0.875 7 C 0.542 3.458 8 O -0.547 6.547 9 N -0.718 5.718 10 C 0.128 3.872 11 C 0.062 3.938 12 H 0.072 0.928 13 C -0.146 4.146 14 C -0.112 4.112 15 C 0.052 3.948 16 C 0.177 3.823 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.082 0.918 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.107 3.893 27 O -0.360 6.360 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.033 0.967 41 H 0.078 0.922 42 H 0.254 0.746 43 H 0.044 0.956 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 6.376 19.686 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.187 4.187 5 C -0.212 4.212 6 H 0.142 0.858 7 C 0.328 3.672 8 O -0.425 6.425 9 N -0.369 5.369 10 C 0.004 3.996 11 C 0.004 3.996 12 H 0.090 0.910 13 C -0.185 4.185 14 C -0.150 4.150 15 C 0.012 3.988 16 C 0.051 3.949 17 N -0.333 5.333 18 C -0.349 4.349 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.019 4.019 27 O -0.278 6.278 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.241 0.759 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.313 7.128 19.356 21.073 hybrid contribution 0.164 -1.355 -0.942 1.659 sum -4.150 5.773 18.414 19.739 Atomic orbital electron populations 1.21409 0.92220 1.02168 1.02341 1.22370 0.95243 0.95080 1.01405 0.86527 1.23098 1.03105 1.01606 0.90896 1.22320 0.97850 1.05404 0.95669 0.85751 1.19644 0.84597 0.84614 0.78297 1.90682 1.68734 1.21069 1.62022 1.45867 1.24678 1.13793 1.52570 1.21455 0.85299 0.96968 0.95833 1.23302 0.90540 0.95476 0.90288 0.91031 1.23171 0.96391 1.00720 0.98176 1.22449 0.95690 0.98114 0.98752 1.24288 0.90198 0.91243 0.93102 1.22310 0.97923 0.86404 0.88233 1.45679 1.79209 1.07624 1.00771 1.19016 1.39177 0.90736 0.85927 0.90066 1.24807 1.01970 0.96775 0.96887 1.69825 1.54451 1.15874 1.16502 0.86029 0.77723 0.80170 0.81728 1.20447 1.21693 1.21650 1.22996 0.98198 0.93207 0.87492 1.88828 1.35351 1.71038 1.32573 0.92333 0.91818 0.91714 0.88348 0.87796 0.75950 0.90501 0.90413 0.90342 0.90433 0.90790 0.89821 0.94880 0.90347 0.93575 0.93813 0.94326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.19 37.16 0.38 -0.46 16 2 C -0.12 -1.08 5.92 -90.62 -0.54 -1.61 16 3 H 0.12 1.21 7.67 -51.93 -0.40 0.81 16 4 C -0.15 -1.15 9.88 -26.73 -0.26 -1.42 16 5 C -0.19 -1.81 5.91 -91.77 -0.54 -2.35 16 6 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.54 6.86 7.61 -10.98 -0.08 6.78 16 8 O -0.55 -8.85 16.26 5.56 0.09 -8.76 16 9 N -0.72 -8.36 5.55 -60.29 -0.33 -8.70 16 10 C 0.13 1.57 5.41 -4.04 -0.02 1.55 16 11 C 0.06 0.81 3.37 -25.65 -0.09 0.72 16 12 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.15 -1.86 6.62 -24.50 -0.16 -2.02 16 14 C -0.11 -1.85 6.47 -25.36 -0.16 -2.01 16 15 C 0.05 1.00 1.56 -90.29 -0.14 0.86 16 16 C 0.18 4.27 7.00 -3.27 -0.02 4.25 16 17 N -0.60 -15.54 3.68 -181.60 -0.67 -16.21 16 18 C -0.22 -6.17 10.70 -15.05 -0.16 -6.33 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -27.19 11.39 55.49 0.63 -26.55 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.11 2.23 8.43 -3.27 -0.03 2.20 16 27 O -0.36 -6.19 10.99 -35.23 -0.39 -6.57 16 28 H 0.06 0.34 7.90 -51.93 -0.41 -0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.60 8.05 -51.92 -0.42 0.19 16 33 H 0.41 4.09 8.47 -40.82 -0.35 3.74 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 39 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 2.05 6.90 -51.93 -0.36 1.70 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.04 0.84 7.85 -51.93 -0.41 0.43 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -32.80 361.26 -9.51 -42.31 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.33 Total: 2.23 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.93 Total: -0.17 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.37 Total: -51.46 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.30 Total: -15.33 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.80 -9.51 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053645102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.188 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds