Wall clock time and date at job start Tue Mar 31 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55337 * 2 1 4 4 C 1.52999 * 117.50264 * 145.70363 * 2 1 3 5 5 C 1.52994 * 117.50137 * 214.32853 * 2 1 3 6 6 H 1.09000 * 117.49794 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.50063 * 145.02144 * 5 2 1 8 8 O 1.21275 * 120.00075 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00056 * 179.97438 * 7 5 2 10 10 C 1.46499 * 120.00152 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47165 * 180.02562 * 10 9 7 12 12 H 1.08993 * 110.53076 * 305.69952 * 11 10 9 13 13 C 1.55050 * 110.59039 * 182.88753 * 11 10 9 14 14 C 1.55169 * 102.04707 * 204.97646 * 13 11 10 15 15 C 1.53433 * 103.90866 * 20.65270 * 14 13 11 16 16 C 1.53217 * 115.02519 * 132.43374 * 15 14 13 17 17 N 1.47717 * 85.89779 * 93.04346 * 16 15 14 18 18 C 1.36944 * 134.43266 * 204.07524 * 17 16 15 19 19 H 1.07999 * 120.00251 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99528 * 0.06277 * 18 17 16 21 21 N 1.31619 * 120.00407 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99601 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47262 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47139 * 119.99782 * 22 20 18 25 25 H 1.48498 * 109.46759 * 239.99833 * 22 20 18 26 26 C 1.47711 * 91.13472 * 24.12015 * 17 16 15 27 27 O 1.42978 * 108.16936 * 1.82694 * 15 14 13 28 28 H 1.09002 * 109.47153 * 205.67152 * 1 2 3 29 29 H 1.09001 * 109.46832 * 85.67343 * 1 2 3 30 30 H 1.09004 * 109.47261 * 325.67324 * 1 2 3 31 31 H 1.08994 * 117.50345 * 214.98309 * 4 2 1 32 32 H 1.09008 * 117.49719 * 0.02562 * 4 2 1 33 33 H 0.97002 * 120.00095 * 0.02562 * 9 7 5 34 34 H 1.09003 * 109.47382 * 300.00249 * 10 9 7 35 35 H 1.09002 * 109.47197 * 60.00191 * 10 9 7 36 36 H 1.09001 * 110.87547 * 323.02104 * 13 11 10 37 37 H 1.09007 * 110.87008 * 86.70516 * 13 11 10 38 38 H 1.08995 * 110.41271 * 262.10156 * 14 13 11 39 39 H 1.08993 * 110.75684 * 139.37761 * 14 13 11 40 40 H 1.08995 * 113.80755 * 207.28912 * 16 15 14 41 41 H 1.09004 * 113.80334 * 338.79606 * 16 15 14 42 42 H 0.96998 * 120.00054 * 180.02562 * 21 20 18 43 43 H 1.09003 * 113.80196 * 221.64195 * 26 17 16 44 44 H 1.09003 * 113.80720 * 90.13317 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1211 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6112 -1.8578 -1.2692 7 6 3.5293 -0.7806 -1.4610 8 8 3.9716 0.3471 -1.4014 9 7 4.1941 -1.7296 -2.1494 10 6 5.4506 -1.3989 -2.8262 11 6 5.9949 -2.6446 -3.5283 12 1 6.0857 -3.4714 -2.8240 13 6 7.3625 -2.3419 -4.1932 14 6 7.4148 -3.4033 -5.3239 15 6 5.9464 -3.7997 -5.5259 16 6 5.4769 -3.8265 -6.9841 17 7 5.8334 -5.2599 -6.9615 18 6 6.1754 -6.1779 -7.9184 19 1 6.3969 -7.1962 -7.6350 20 6 6.2380 -5.7993 -9.2524 21 7 5.9682 -4.5582 -9.5978 22 14 6.7038 -7.0518 -10.5578 23 1 6.9553 -8.3666 -9.9149 24 1 5.5941 -7.1837 -11.5356 25 1 7.9318 -6.6008 -11.2605 26 6 5.6722 -5.3070 -5.4940 27 8 5.1463 -3.0137 -4.6391 28 1 -0.3633 -0.9262 0.4452 29 1 -0.3633 0.0775 -1.0248 30 1 -0.3634 0.8487 0.5795 31 1 3.1715 -0.8755 1.2680 32 1 1.6113 -1.8591 1.2675 33 1 3.8402 -2.6315 -2.1974 34 1 5.2713 -0.6160 -3.5631 35 1 6.1768 -1.0482 -2.0929 36 1 7.3783 -1.3338 -4.6074 37 1 8.1787 -2.4849 -3.4850 38 1 8.0038 -4.2649 -5.0097 39 1 7.8244 -2.9739 -6.2382 40 1 4.4099 -3.6404 -7.1063 41 1 6.0942 -3.2302 -7.6560 42 1 6.0117 -4.2938 -10.5300 43 1 6.4444 -5.8838 -4.9849 44 1 4.6637 -5.5640 -5.1701 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053645102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:57 Heat of formation + Delta-G solvation = -29.231899 kcal Electronic energy + Delta-G solvation = -23564.777902 eV Core-core repulsion = 20097.616961 eV Total energy + Delta-G solvation = -3467.160940 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44703 -40.88659 -38.30504 -37.63127 -35.65159 -34.10110 -33.06706 -30.88868 -29.62096 -28.66045 -26.79308 -25.85784 -24.29738 -23.31574 -22.35540 -21.76700 -20.86734 -20.39576 -18.78539 -18.45031 -17.77608 -17.00266 -16.97761 -16.28333 -16.16846 -15.95891 -15.57769 -15.18125 -14.89500 -14.77993 -14.21067 -14.13853 -13.98571 -13.68476 -13.50147 -13.33258 -12.97988 -12.90199 -12.85136 -12.61922 -12.37271 -12.32005 -12.23364 -12.09027 -11.84272 -11.62998 -11.47636 -11.32889 -11.06047 -10.89872 -10.79541 -10.38673 -10.12881 -8.98593 -7.93671 -5.28415 1.45200 1.46615 1.47251 1.56979 2.12585 2.42168 2.76985 2.87215 3.25366 3.42830 3.56335 3.67034 3.71610 3.78899 3.80329 3.89780 4.01049 4.12929 4.23815 4.42686 4.44509 4.50617 4.57187 4.72153 4.77075 4.81699 4.88276 4.90752 4.92093 4.95091 5.02664 5.07501 5.10267 5.13987 5.19579 5.22044 5.37193 5.39221 5.44732 5.47600 5.86138 6.14122 6.52402 6.87165 7.21138 7.56453 8.50793 9.23990 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.002774 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.851784 B =10089.860315 C =10540.813937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.132 4.132 3 H 0.093 0.907 4 C -0.130 4.130 5 C -0.201 4.201 6 H 0.142 0.858 7 C 0.536 3.464 8 O -0.590 6.590 9 N -0.713 5.713 10 C 0.132 3.868 11 C 0.065 3.935 12 H 0.098 0.902 13 C -0.135 4.135 14 C -0.112 4.112 15 C 0.078 3.922 16 C 0.168 3.832 17 N -0.631 5.631 18 C -0.232 4.232 19 H 0.089 0.911 20 C -0.069 4.069 21 N -0.955 5.955 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.290 1.290 26 C 0.110 3.890 27 O -0.374 6.374 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.415 0.585 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.007 0.993 41 H 0.048 0.952 42 H 0.249 0.751 43 H 0.068 0.932 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 4.964 22.081 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.150 4.150 3 H 0.112 0.888 4 C -0.168 4.168 5 C -0.221 4.221 6 H 0.160 0.840 7 C 0.325 3.675 8 O -0.471 6.471 9 N -0.364 5.364 10 C 0.008 3.992 11 C 0.007 3.993 12 H 0.116 0.884 13 C -0.173 4.173 14 C -0.150 4.150 15 C 0.037 3.963 16 C 0.043 3.957 17 N -0.359 5.359 18 C -0.360 4.360 19 H 0.107 0.893 20 C -0.261 4.261 21 N -0.604 5.604 22 Si 0.810 3.190 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.217 1.217 26 C -0.015 4.015 27 O -0.293 6.293 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.149 0.851 33 H 0.251 0.749 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.025 0.975 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.052 5.681 21.794 22.884 hybrid contribution 0.042 -0.871 -1.626 1.845 sum -4.010 4.810 20.168 21.118 Atomic orbital electron populations 1.21404 0.90552 1.03385 1.02375 1.22410 0.96498 0.94205 1.01925 0.88827 1.23201 1.02963 1.01142 0.89462 1.22365 0.96567 1.06391 0.96822 0.83991 1.20220 0.85365 0.84008 0.77938 1.90660 1.70026 1.22760 1.63621 1.45861 1.24417 1.14160 1.51922 1.21382 0.86067 0.96004 0.95723 1.23531 0.89926 0.96504 0.89303 0.88424 1.23167 0.97387 0.99386 0.97329 1.22415 0.93517 0.99673 0.99385 1.23740 0.91730 0.90659 0.90157 1.22175 0.95884 0.85949 0.91723 1.46003 1.79217 1.07877 1.02800 1.19443 1.38234 0.91508 0.86798 0.89302 1.25699 1.02667 0.98647 0.99129 1.70031 1.56092 1.17842 1.16388 0.84954 0.76852 0.78497 0.78673 1.18607 1.22157 1.21705 1.23132 0.99048 0.94600 0.84734 1.88802 1.36180 1.70673 1.33648 0.90706 0.92306 0.90993 0.88899 0.85086 0.74862 0.92683 0.88729 0.90318 0.86773 0.89657 0.92023 0.97516 0.93393 0.94206 0.91436 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 10.19 71.98 0.73 -0.68 16 2 C -0.13 -2.18 5.92 -10.80 -0.06 -2.24 16 3 H 0.09 1.98 7.67 -2.38 -0.02 1.97 16 4 C -0.13 -1.71 9.88 30.59 0.30 -1.41 16 5 C -0.20 -3.47 5.91 -11.54 -0.07 -3.54 16 6 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 7 C 0.54 13.14 7.61 87.66 0.67 13.81 16 8 O -0.59 -19.18 16.26 -3.01 -0.05 -19.22 16 9 N -0.71 -15.46 5.55 -463.06 -2.57 -18.03 16 10 C 0.13 3.02 5.41 86.38 0.47 3.49 16 11 C 0.06 1.51 3.37 31.30 0.11 1.61 16 12 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 13 C -0.13 -3.05 6.62 32.04 0.21 -2.84 16 14 C -0.11 -3.54 6.47 31.48 0.20 -3.34 16 15 C 0.08 2.94 1.56 -10.46 -0.02 2.93 16 16 C 0.17 8.47 7.00 86.22 0.60 9.07 16 17 N -0.63 -32.77 3.68 -733.88 -2.70 -35.47 16 18 C -0.23 -13.01 10.70 84.03 0.90 -12.11 16 19 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.95 -58.43 11.39 21.65 0.25 -58.19 16 22 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 C 0.11 4.43 8.43 86.22 0.73 5.15 16 27 O -0.37 -12.45 10.99 -148.98 -1.64 -14.09 16 28 H 0.07 0.64 7.90 -2.39 -0.02 0.62 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.13 1.03 8.05 -2.38 -0.02 1.01 16 33 H 0.42 7.43 8.47 -92.71 -0.79 6.65 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 1.81 8.05 -2.39 -0.02 1.79 16 37 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.08 2.51 7.74 -2.39 -0.02 2.49 16 39 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.05 2.67 6.90 -2.39 -0.02 2.65 16 42 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.07 2.41 7.85 -2.39 -0.02 2.39 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.75 361.26 0.75 -73.00 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.20 Total: 17.83 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.24 Total: 6.46 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -5.03 Total: -111.68 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.69 Total: -33.32 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.75 0.75 -73.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053645102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.768 kcal (2) G-P(sol) polarization free energy of solvation -73.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds