Wall clock time and date at job start Tue Mar 31 2020 07:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47093 * 2 1 4 4 C 1.50700 * 109.46752 * 119.99882 * 2 1 3 5 5 O 1.21281 * 119.99629 * 120.00137 * 4 2 1 6 6 N 1.34772 * 120.00073 * 299.99785 * 4 2 1 7 7 C 1.46500 * 119.99797 * 180.02562 * 6 4 2 8 8 H 1.08999 * 110.77217 * 328.53291 * 7 6 4 9 9 C 1.55065 * 111.04978 * 92.19045 * 7 6 4 10 10 O 1.44603 * 103.66968 * 81.71931 * 9 7 6 11 11 C 1.42840 * 106.73701 * 39.08381 * 10 9 7 12 12 C 1.52650 * 115.96120 * 202.49258 * 11 10 9 13 13 N 1.47225 * 87.77974 * 218.40494 * 12 11 10 14 14 C 1.36932 * 135.96623 * 206.41388 * 13 12 11 15 15 H 1.08007 * 119.99991 * 8.61441 * 14 13 12 16 16 C 1.38813 * 120.00120 * 188.61611 * 14 13 12 17 17 N 1.31617 * 119.99684 * 18.60951 * 16 14 13 18 18 Si 1.86795 * 120.00179 * 198.60693 * 16 14 13 19 19 H 1.48505 * 109.46945 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47336 * 119.99988 * 18 16 14 21 21 H 1.48501 * 109.47405 * 240.00119 * 18 16 14 22 22 C 1.47219 * 88.06647 * 26.66831 * 13 12 11 23 23 C 1.53319 * 108.32950 * 334.31764 * 11 10 9 24 24 C 1.53000 * 109.46986 * 239.99945 * 2 1 3 25 25 C 1.53001 * 117.49748 * 128.62331 * 24 2 1 26 26 C 1.52997 * 117.49897 * 60.00055 * 24 2 1 27 27 H 1.09004 * 109.46846 * 59.99805 * 1 2 3 28 28 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47039 * 300.00544 * 1 2 3 30 30 H 0.97002 * 120.00518 * 0.02562 * 6 4 2 31 31 H 1.08998 * 110.58726 * 200.26738 * 9 7 6 32 32 H 1.09000 * 110.58483 * 323.17353 * 9 7 6 33 33 H 1.08996 * 113.50421 * 103.67644 * 12 11 10 34 34 H 1.09000 * 113.50094 * 333.13069 * 12 11 10 35 35 H 0.96999 * 120.00505 * 5.68979 * 17 16 14 36 36 H 1.09004 * 113.50062 * 88.05827 * 22 13 12 37 37 H 1.08994 * 113.49940 * 218.60260 * 22 13 12 38 38 H 1.08999 * 110.56736 * 120.18132 * 23 11 10 39 39 H 1.09007 * 110.56323 * 242.88604 * 23 11 10 40 40 H 1.08998 * 115.54837 * 274.32964 * 24 2 1 41 41 H 1.08997 * 117.49828 * 359.97438 * 25 24 2 42 42 H 1.09000 * 117.49891 * 145.02034 * 25 24 2 43 43 H 1.08998 * 117.49927 * 214.97431 * 26 24 2 44 44 H 1.09002 * 117.50141 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 2.1954 -0.9402 3.6507 8 1 2.3000 -2.0091 3.4646 9 6 3.5356 -0.3305 4.1372 10 8 3.1274 0.8321 4.8939 11 6 1.9527 0.4607 5.6168 12 6 1.0452 1.6084 6.0522 13 7 0.8205 0.8775 7.3103 14 6 -0.1742 0.8169 8.2495 15 1 -1.1192 1.3072 8.0676 16 6 0.0320 0.1254 9.4353 17 7 1.2562 -0.1545 9.8295 18 14 -1.4278 -0.4079 10.4716 19 1 -2.6865 0.0260 9.8138 20 1 -1.4242 -1.8866 10.6080 21 1 -1.3332 0.2136 11.8170 22 6 2.1363 0.2451 7.1199 23 6 1.2609 -0.6790 4.8598 24 6 2.0400 -0.7213 -1.2492 25 6 3.0741 0.0051 -2.1117 26 6 1.6357 -0.1495 -2.6096 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.1487 0.5386 2.5436 31 1 4.0682 -1.0355 4.7753 32 1 4.1538 -0.0377 3.2885 33 1 0.1480 1.7088 5.4416 34 1 1.5728 2.5527 6.1865 35 1 2.0159 0.1926 9.3363 36 1 2.9600 0.8195 7.5439 37 1 2.1598 -0.8051 7.4104 38 1 1.1892 -1.5674 5.4873 39 1 0.2718 -0.3693 4.5221 40 1 2.1267 -1.8045 -1.1642 41 1 3.3908 0.9970 -1.7893 42 1 3.8416 -0.6001 -2.5941 43 1 1.4569 -0.8566 -3.4196 44 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053766614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:02 Heat of formation + Delta-G solvation = -1.549873 kcal Electronic energy + Delta-G solvation = -24165.531555 eV Core-core repulsion = 20699.570997 eV Total energy + Delta-G solvation = -3465.960558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.61444 -39.62805 -37.55539 -36.52934 -34.44011 -32.57271 -32.32088 -30.09956 -27.97971 -25.89243 -25.40155 -24.87194 -22.62216 -22.49265 -21.97435 -20.82492 -19.84628 -18.92295 -17.65414 -17.45533 -16.73929 -15.66083 -15.56770 -15.27496 -14.76485 -14.61295 -14.46499 -14.12593 -13.85963 -13.67472 -13.36859 -13.15254 -12.75393 -12.54667 -12.34939 -12.18762 -11.73251 -11.55091 -11.38919 -11.24202 -11.21427 -11.09032 -10.87422 -10.69954 -10.62840 -10.29159 -10.15270 -10.08389 -9.77805 -9.56338 -9.25766 -8.79524 -8.67775 -7.09932 -6.17208 -3.20664 2.53439 2.99817 3.45971 3.51292 3.56054 3.62182 4.09902 4.29816 4.42567 4.50866 4.58860 4.65298 4.77850 4.92468 4.95513 4.99971 5.08288 5.11063 5.17712 5.19692 5.33742 5.40461 5.43023 5.47267 5.55638 5.63319 5.75382 5.80263 5.83325 5.84259 6.00462 6.05989 6.13326 6.25030 6.39089 6.42633 6.45894 6.61636 6.70763 7.19188 7.38384 7.44878 8.13194 8.25049 8.85639 9.70139 10.42509 11.23693 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030626 B = 0.003143 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.033331 B = 8907.648283 C = 9275.881486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.097 0.903 4 C 0.520 3.480 5 O -0.541 6.541 6 N -0.713 5.713 7 C 0.108 3.892 8 H 0.106 0.894 9 C 0.040 3.960 10 O -0.361 6.361 11 C 0.052 3.948 12 C 0.128 3.872 13 N -0.608 5.608 14 C -0.316 4.316 15 H 0.077 0.923 16 C -0.032 4.032 17 N -0.931 5.931 18 Si 1.081 2.919 19 H -0.292 1.292 20 H -0.289 1.289 21 H -0.293 1.293 22 C 0.124 3.876 23 C -0.116 4.116 24 C -0.134 4.134 25 C -0.178 4.178 26 C -0.179 4.179 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.403 0.597 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.267 0.733 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 0.333 -22.150 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 H 0.115 0.885 4 C 0.307 3.693 5 O -0.417 6.417 6 N -0.364 5.364 7 C 0.002 3.998 8 H 0.124 0.876 9 C -0.038 4.038 10 O -0.278 6.278 11 C 0.011 3.989 12 C 0.002 3.998 13 N -0.337 5.337 14 C -0.442 4.442 15 H 0.094 0.906 16 C -0.232 4.232 17 N -0.573 5.573 18 Si 0.911 3.089 19 H -0.218 1.218 20 H -0.216 1.216 21 H -0.220 1.220 22 C -0.003 4.003 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.215 4.215 26 C -0.216 4.216 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.238 0.762 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.156 -1.029 -20.673 20.699 hybrid contribution 0.288 1.303 -1.137 1.753 sum 0.444 0.274 -21.810 21.816 Atomic orbital electron populations 1.21762 0.92447 1.03049 1.02727 1.20868 0.97513 1.00018 0.91808 0.88495 1.20540 0.79840 0.84452 0.84492 1.90682 1.37880 1.26423 1.86760 1.45971 1.53407 1.32003 1.05067 1.22595 0.94411 0.98114 0.84633 0.87648 1.23921 0.95791 0.88815 0.95313 1.88766 1.43628 1.33637 1.61784 1.23715 0.85967 0.96475 0.92725 1.22386 0.94791 0.93756 0.88857 1.45642 1.16671 1.46974 1.24405 1.19802 0.91353 1.35566 0.97482 0.90563 1.25864 1.02666 0.99484 0.95165 1.70695 0.98209 1.47411 1.41005 0.83269 0.73572 0.76701 0.75365 1.21824 1.21590 1.21999 1.22667 0.89374 0.98168 0.90044 1.22671 0.98768 0.99385 0.94535 1.22036 1.03431 1.00115 0.89633 1.23013 0.92553 1.01899 1.04025 1.22976 0.98210 1.03258 0.97156 0.91302 0.91825 0.91885 0.76220 0.91209 0.89301 0.93558 0.94304 0.92116 0.94222 0.92809 0.88782 0.89634 0.86612 0.88862 0.88763 0.88733 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.93 37.16 0.33 -0.70 16 2 C -0.08 -0.72 2.88 -91.77 -0.26 -0.98 16 3 H 0.10 0.75 7.90 -51.93 -0.41 0.34 16 4 C 0.52 6.28 7.15 -10.99 -0.08 6.20 16 5 O -0.54 -8.41 15.29 5.56 0.08 -8.33 16 6 N -0.71 -8.29 5.05 -51.71 -0.26 -8.55 16 7 C 0.11 1.46 3.51 -65.77 -0.23 1.23 16 8 H 0.11 1.46 7.54 -51.93 -0.39 1.07 16 9 C 0.04 0.57 7.43 38.25 0.28 0.86 16 10 O -0.36 -6.30 11.32 -35.23 -0.40 -6.70 16 11 C 0.05 0.96 1.66 -90.66 -0.15 0.81 16 12 C 0.13 2.65 8.20 -8.03 -0.07 2.59 16 13 N -0.61 -15.44 3.65 -184.60 -0.67 -16.11 16 14 C -0.32 -8.86 10.65 -15.06 -0.16 -9.02 16 15 H 0.08 2.09 7.90 -52.48 -0.41 1.68 16 16 C -0.03 -0.91 5.45 -17.43 -0.09 -1.01 16 17 N -0.93 -28.59 13.34 55.49 0.74 -27.85 16 18 Si 1.08 25.34 29.96 -169.99 -5.09 20.25 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.12 2.87 5.68 -7.88 -0.04 2.82 16 23 C -0.12 -1.80 6.11 -25.49 -0.16 -1.96 16 24 C -0.13 -1.22 4.76 -90.62 -0.43 -1.65 16 25 C -0.18 -1.44 10.18 -26.73 -0.27 -1.71 16 26 C -0.18 -1.27 9.73 -26.73 -0.26 -1.53 16 27 H 0.07 0.41 7.29 -51.93 -0.38 0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 30 H 0.40 4.07 8.04 -40.82 -0.33 3.74 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.87 7.91 -51.93 -0.41 0.46 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.27 8.20 5.92 -40.82 -0.24 7.95 16 36 H 0.04 0.97 7.96 -51.93 -0.41 0.56 16 37 H 0.05 1.32 7.79 -51.93 -0.40 0.91 16 38 H 0.09 1.56 7.82 -51.93 -0.41 1.15 16 39 H 0.09 1.27 7.70 -51.93 -0.40 0.87 16 40 H 0.12 1.26 7.47 -51.93 -0.39 0.88 16 41 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.57 7.61 -51.93 -0.39 0.18 16 LS Contribution 355.54 15.07 5.36 5.36 Total: -1.00 -33.28 355.54 -8.96 -42.24 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.12 Total: 3.73 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.59 Total: -4.04 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.19 Total: -52.51 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.31 Total: -15.02 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.09 Total: 20.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.28 -8.96 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053766614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.691 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds