Wall clock time and date at job start Tue Mar 31 2020 07:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47093 * 2 1 4 4 C 1.50700 * 109.46752 * 119.99882 * 2 1 3 5 5 O 1.21281 * 119.99629 * 120.00137 * 4 2 1 6 6 N 1.34772 * 120.00073 * 299.99785 * 4 2 1 7 7 C 1.46500 * 119.99797 * 180.02562 * 6 4 2 8 8 H 1.08999 * 110.77217 * 328.53291 * 7 6 4 9 9 C 1.55065 * 111.04978 * 92.19045 * 7 6 4 10 10 O 1.44603 * 103.66968 * 81.71931 * 9 7 6 11 11 C 1.42840 * 106.73701 * 39.08381 * 10 9 7 12 12 C 1.52650 * 115.96120 * 202.49258 * 11 10 9 13 13 N 1.47225 * 87.77974 * 218.40494 * 12 11 10 14 14 C 1.36932 * 135.96623 * 206.41388 * 13 12 11 15 15 H 1.08007 * 119.99991 * 8.61441 * 14 13 12 16 16 C 1.38813 * 120.00120 * 188.61611 * 14 13 12 17 17 N 1.31617 * 119.99684 * 18.60951 * 16 14 13 18 18 Si 1.86795 * 120.00179 * 198.60693 * 16 14 13 19 19 H 1.48505 * 109.46945 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47336 * 119.99988 * 18 16 14 21 21 H 1.48501 * 109.47405 * 240.00119 * 18 16 14 22 22 C 1.47219 * 88.06647 * 26.66831 * 13 12 11 23 23 C 1.53319 * 108.32950 * 334.31764 * 11 10 9 24 24 C 1.53000 * 109.46986 * 239.99945 * 2 1 3 25 25 C 1.53001 * 117.49748 * 128.62331 * 24 2 1 26 26 C 1.52997 * 117.49897 * 60.00055 * 24 2 1 27 27 H 1.09004 * 109.46846 * 59.99805 * 1 2 3 28 28 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47039 * 300.00544 * 1 2 3 30 30 H 0.97002 * 120.00518 * 0.02562 * 6 4 2 31 31 H 1.08998 * 110.58726 * 200.26738 * 9 7 6 32 32 H 1.09000 * 110.58483 * 323.17353 * 9 7 6 33 33 H 1.08996 * 113.50421 * 103.67644 * 12 11 10 34 34 H 1.09000 * 113.50094 * 333.13069 * 12 11 10 35 35 H 0.96999 * 120.00505 * 5.68979 * 17 16 14 36 36 H 1.09004 * 113.50062 * 88.05827 * 22 13 12 37 37 H 1.08994 * 113.49940 * 218.60260 * 22 13 12 38 38 H 1.08999 * 110.56736 * 120.18132 * 23 11 10 39 39 H 1.09007 * 110.56323 * 242.88604 * 23 11 10 40 40 H 1.08998 * 115.54837 * 274.32964 * 24 2 1 41 41 H 1.08997 * 117.49828 * 359.97438 * 25 24 2 42 42 H 1.09000 * 117.49891 * 145.02034 * 25 24 2 43 43 H 1.08998 * 117.49927 * 214.97431 * 26 24 2 44 44 H 1.09002 * 117.50141 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 2.1954 -0.9402 3.6507 8 1 2.3000 -2.0091 3.4646 9 6 3.5356 -0.3305 4.1372 10 8 3.1274 0.8321 4.8939 11 6 1.9527 0.4607 5.6168 12 6 1.0452 1.6084 6.0522 13 7 0.8205 0.8775 7.3103 14 6 -0.1742 0.8169 8.2495 15 1 -1.1192 1.3072 8.0676 16 6 0.0320 0.1254 9.4353 17 7 1.2562 -0.1545 9.8295 18 14 -1.4278 -0.4079 10.4716 19 1 -2.6865 0.0260 9.8138 20 1 -1.4242 -1.8866 10.6080 21 1 -1.3332 0.2136 11.8170 22 6 2.1363 0.2451 7.1199 23 6 1.2609 -0.6790 4.8598 24 6 2.0400 -0.7213 -1.2492 25 6 3.0741 0.0051 -2.1117 26 6 1.6357 -0.1495 -2.6096 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.1487 0.5386 2.5436 31 1 4.0682 -1.0355 4.7753 32 1 4.1538 -0.0377 3.2885 33 1 0.1480 1.7088 5.4416 34 1 1.5728 2.5527 6.1865 35 1 2.0159 0.1926 9.3363 36 1 2.9600 0.8195 7.5439 37 1 2.1598 -0.8051 7.4104 38 1 1.1892 -1.5674 5.4873 39 1 0.2718 -0.3693 4.5221 40 1 2.1267 -1.8045 -1.1642 41 1 3.3908 0.9970 -1.7893 42 1 3.8416 -0.6001 -2.5941 43 1 1.4569 -0.8566 -3.4196 44 1 1.0061 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053766614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:02 Heat of formation + Delta-G solvation = -23.812063 kcal Electronic energy + Delta-G solvation = -24166.496916 eV Core-core repulsion = 20699.570997 eV Total energy + Delta-G solvation = -3466.925919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90150 -40.79077 -38.51691 -37.90486 -35.59148 -34.37441 -33.35338 -31.26011 -29.69426 -27.60848 -26.64253 -26.05063 -24.05141 -23.38988 -23.08829 -21.85977 -20.65012 -20.53747 -19.47808 -18.50505 -17.90729 -16.88729 -16.63073 -16.57860 -16.15465 -15.97219 -15.69377 -15.58117 -15.25233 -15.04596 -14.56529 -14.28534 -13.99537 -13.74297 -13.16571 -13.11818 -12.98690 -12.80309 -12.70962 -12.64455 -12.46982 -12.30250 -12.26230 -11.89329 -11.85300 -11.85019 -11.58205 -11.26824 -10.92802 -10.78297 -10.72426 -10.64923 -10.03773 -9.17896 -8.41055 -5.40114 1.57591 1.59595 1.67812 1.81507 2.06131 2.52182 2.78463 2.94370 3.16437 3.26538 3.43852 3.48118 3.52125 3.66625 3.70104 3.89515 4.01770 4.15227 4.27311 4.34189 4.47662 4.49725 4.56082 4.57868 4.59633 4.65508 4.72366 4.73081 4.79651 4.80723 4.86963 4.89033 4.96313 5.00694 5.07435 5.23897 5.27629 5.31401 5.34988 5.43870 5.93126 6.08898 6.51271 6.63744 7.20352 7.56039 8.36624 9.01940 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030626 B = 0.003143 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.033331 B = 8907.648283 C = 9275.881486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 H 0.115 0.885 4 C 0.519 3.481 5 O -0.579 6.579 6 N -0.705 5.705 7 C 0.122 3.878 8 H 0.106 0.894 9 C 0.037 3.963 10 O -0.368 6.368 11 C 0.082 3.918 12 C 0.128 3.872 13 N -0.635 5.635 14 C -0.318 4.318 15 H 0.082 0.918 16 C -0.091 4.091 17 N -0.966 5.966 18 Si 1.132 2.868 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.293 1.293 22 C 0.118 3.882 23 C -0.108 4.108 24 C -0.152 4.152 25 C -0.185 4.185 26 C -0.160 4.160 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.414 0.586 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.253 0.747 36 H 0.018 0.982 37 H 0.031 0.969 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 1.188 -24.339 24.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.133 0.867 4 C 0.307 3.693 5 O -0.458 6.458 6 N -0.357 5.357 7 C 0.016 3.984 8 H 0.124 0.876 9 C -0.041 4.041 10 O -0.286 6.286 11 C 0.041 3.959 12 C 0.003 3.997 13 N -0.364 5.364 14 C -0.446 4.446 15 H 0.100 0.900 16 C -0.284 4.284 17 N -0.611 5.611 18 Si 0.956 3.044 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.220 1.220 22 C -0.009 4.009 23 C -0.146 4.146 24 C -0.171 4.171 25 C -0.222 4.222 26 C -0.197 4.197 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.251 0.749 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.049 0.951 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.523 -0.132 -22.912 22.963 hybrid contribution 0.897 1.079 -0.531 1.500 sum -0.626 0.947 -23.443 23.470 Atomic orbital electron populations 1.21780 0.90990 1.02808 1.04131 1.20883 0.98556 1.00201 0.89713 0.86674 1.21163 0.78945 0.83924 0.85230 1.90671 1.39662 1.28240 1.87270 1.45892 1.53313 1.32127 1.04393 1.22330 0.93145 0.98301 0.84646 0.87646 1.24097 0.96530 0.88040 0.95431 1.88759 1.43203 1.34885 1.61708 1.23242 0.86139 0.96272 0.90280 1.22510 0.96323 0.93798 0.87096 1.45922 1.16837 1.48446 1.25225 1.20170 0.92192 1.34419 0.97771 0.90046 1.27372 1.04124 0.99903 0.96976 1.70821 0.98825 1.49546 1.41936 0.82624 0.71615 0.76218 0.73986 1.18851 1.21491 1.21983 1.22685 0.88164 0.96243 0.93774 1.22582 0.99610 0.97645 0.94736 1.21962 1.05239 0.98958 0.90942 1.23101 0.93127 1.02019 1.03913 1.23060 0.97436 1.03513 0.95655 0.89427 0.92892 0.90976 0.74950 0.90963 0.88021 0.90760 0.94635 0.93706 0.96451 0.95113 0.89930 0.88086 0.89110 0.88106 0.89093 0.88139 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.93 71.98 0.64 -0.97 16 2 C -0.07 -1.11 2.88 -11.54 -0.03 -1.14 16 3 H 0.12 1.37 7.90 -2.39 -0.02 1.35 16 4 C 0.52 11.63 7.15 87.66 0.63 12.26 16 5 O -0.58 -17.63 15.29 -3.03 -0.05 -17.68 16 6 N -0.71 -14.74 5.05 -435.92 -2.20 -16.94 16 7 C 0.12 3.10 3.51 46.39 0.16 3.26 16 8 H 0.11 2.79 7.54 -2.39 -0.02 2.77 16 9 C 0.04 1.01 7.43 72.69 0.54 1.55 16 10 O -0.37 -12.40 11.32 -148.98 -1.69 -14.09 16 11 C 0.08 2.97 1.66 -10.82 -0.02 2.95 16 12 C 0.13 5.12 8.20 83.40 0.68 5.81 16 13 N -0.64 -32.42 3.65 -739.07 -2.69 -35.12 16 14 C -0.32 -17.87 10.65 84.03 0.89 -16.97 16 15 H 0.08 4.38 7.90 -2.91 -0.02 4.36 16 16 C -0.09 -5.24 5.45 84.86 0.46 -4.78 16 17 N -0.97 -61.05 13.34 21.65 0.29 -60.76 16 18 Si 1.13 50.94 29.96 68.60 2.06 52.99 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 C 0.12 5.63 5.68 83.50 0.47 6.10 16 23 C -0.11 -3.20 6.11 31.40 0.19 -3.01 16 24 C -0.15 -2.55 4.76 -10.79 -0.05 -2.60 16 25 C -0.18 -2.65 10.18 30.60 0.31 -2.34 16 26 C -0.16 -1.84 9.73 30.59 0.30 -1.54 16 27 H 0.09 0.70 7.29 -2.38 -0.02 0.69 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.71 7.56 -2.39 -0.02 0.69 16 30 H 0.41 6.99 8.04 -92.71 -0.75 6.25 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.57 7.91 -2.39 -0.02 2.55 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.25 16.19 5.92 -92.71 -0.55 15.64 16 36 H 0.02 0.91 7.96 -2.38 -0.02 0.89 16 37 H 0.03 1.58 7.79 -2.39 -0.02 1.56 16 38 H 0.08 2.70 7.82 -2.39 -0.02 2.68 16 39 H 0.10 2.72 7.70 -2.38 -0.02 2.70 16 40 H 0.09 1.98 7.47 -2.39 -0.02 1.97 16 41 H 0.10 1.28 8.05 -2.39 -0.02 1.26 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.11 0.92 7.61 -2.39 -0.02 0.90 16 Total: -1.00 -73.40 355.54 1.37 -72.03 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.47 Total: 20.98 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.19 Total: -1.42 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -4.61 Total: -112.82 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.73 Total: -31.77 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.06 Total: 52.99 kcal Total: -73.40 1.37 -72.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053766614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.221 kcal (2) G-P(sol) polarization free energy of solvation -73.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds