Wall clock time and date at job start Tue Mar 31 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.51552 * 2 1 4 4 C 1.53280 * 109.51071 * 239.89916 * 2 1 3 5 5 N 1.47169 * 108.55043 * 187.13372 * 4 2 1 6 6 C 1.34776 * 121.06231 * 231.10981 * 5 4 2 7 7 O 1.21278 * 120.00016 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00295 * 0.02562 * 6 5 4 9 9 C 1.52997 * 117.50440 * 248.75327 * 8 6 5 10 10 C 1.52994 * 117.50226 * 180.09089 * 8 6 5 11 11 C 1.47303 * 117.86881 * 51.12664 * 5 4 2 12 12 C 1.52517 * 108.40049 * 310.60735 * 11 5 4 13 13 C 1.54510 * 110.04532 * 287.92361 * 12 11 5 14 14 C 1.55274 * 101.41938 * 206.72084 * 13 12 11 15 15 N 1.47480 * 104.77126 * 36.70152 * 14 13 12 16 16 C 1.36939 * 125.65964 * 155.88546 * 15 14 13 17 17 H 1.08002 * 119.99408 * 199.41849 * 16 15 14 18 18 C 1.38810 * 120.00312 * 19.41472 * 16 15 14 19 19 N 1.31627 * 119.99708 * 28.46131 * 18 16 15 20 20 Si 1.86791 * 120.00109 * 208.45749 * 18 16 15 21 21 H 1.48499 * 109.47194 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47320 * 300.00270 * 20 18 16 23 23 H 1.48501 * 109.47034 * 60.00347 * 20 18 16 24 24 C 1.47188 * 108.67257 * 335.61795 * 15 14 13 25 25 O 1.42065 * 111.11309 * 50.43169 * 12 11 5 26 26 H 1.08995 * 109.47472 * 180.10307 * 1 2 3 27 27 H 1.08997 * 109.46872 * 300.10131 * 1 2 3 28 28 H 1.08999 * 109.47125 * 60.09580 * 1 2 3 29 29 H 1.08998 * 109.61930 * 67.41356 * 4 2 1 30 30 H 1.09005 * 109.62075 * 306.85160 * 4 2 1 31 31 H 1.09010 * 115.54478 * 34.42295 * 8 6 5 32 32 H 1.08999 * 117.49724 * 359.97438 * 9 8 6 33 33 H 1.09002 * 117.50073 * 145.01871 * 9 8 6 34 34 H 1.09002 * 117.50080 * 214.98544 * 10 8 6 35 35 H 1.09000 * 117.49807 * 359.97399 * 10 8 6 36 36 H 1.09002 * 109.67975 * 190.87944 * 11 5 4 37 37 H 1.09009 * 109.67769 * 70.33199 * 11 5 4 38 38 H 1.09004 * 111.01589 * 324.97370 * 13 12 11 39 39 H 1.09004 * 111.01834 * 88.80844 * 13 12 11 40 40 H 1.08999 * 110.49951 * 277.83790 * 14 13 12 41 41 H 1.09004 * 110.32642 * 155.47132 * 14 13 12 42 42 H 0.97000 * 120.00221 * 5.64559 * 19 18 16 43 43 H 1.08999 * 109.90574 * 121.14190 * 24 15 14 44 44 H 1.09006 * 109.90548 * 242.21210 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5032 -0.8639 -1.1448 6 6 4.3127 -0.4781 -2.1509 7 8 5.5144 -0.6021 -2.0440 8 6 3.7248 0.1075 -3.4089 9 6 3.8264 -0.7233 -4.6896 10 6 4.6959 0.5242 -4.5152 11 6 4.0527 -1.4390 0.0950 12 6 3.4244 -0.7148 1.2812 13 6 3.9930 0.7178 1.3888 14 6 3.8288 1.0006 2.9067 15 7 4.1125 -0.2896 3.5624 16 6 4.5436 -0.4519 4.8520 17 1 5.0182 -1.3750 5.1504 18 6 4.3705 0.5698 5.7755 19 7 3.3677 1.4123 5.6446 20 14 5.5606 0.7491 7.2040 21 1 5.1591 1.9086 8.0403 22 1 5.5356 -0.4866 8.0272 23 1 6.9330 0.9674 6.6805 24 6 3.8491 -1.3739 2.6026 25 8 2.0090 -0.6769 1.1663 26 1 -0.3634 -1.0276 0.0018 27 1 -0.3633 0.5154 0.8891 28 1 -0.3633 0.5123 -0.8908 29 1 1.7925 -0.1435 -2.1378 30 1 1.5837 -1.7116 -1.3143 31 1 2.8287 0.7129 -3.2714 32 1 4.3189 -1.6934 -4.6224 33 1 2.9974 -0.6644 -5.3949 34 1 4.4387 1.4035 -5.1058 35 1 5.7602 0.3752 -4.3330 36 1 5.1342 -1.3049 0.1140 37 1 3.8131 -2.5012 0.1447 38 1 5.0419 0.7453 1.0933 39 1 3.4039 1.4178 0.7962 40 1 2.8110 1.3224 3.1271 41 1 4.5447 1.7561 3.2307 42 1 2.7032 1.2716 4.9521 43 1 4.7539 -1.9623 2.4500 44 1 3.0491 -2.0135 2.9756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071116488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:42 Heat of formation + Delta-G solvation = -17.603722 kcal Electronic energy + Delta-G solvation = -25213.267682 eV Core-core repulsion = 21746.610978 eV Total energy + Delta-G solvation = -3466.656705 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80390 -39.20791 -36.59156 -36.31641 -34.70797 -33.27013 -31.43930 -29.34456 -28.81438 -26.57777 -26.17548 -24.22372 -22.98176 -22.68565 -22.03103 -20.24457 -19.57788 -18.89487 -17.78040 -17.51060 -16.73767 -16.11514 -15.59019 -15.11737 -14.77946 -14.55701 -14.35182 -13.77563 -13.63396 -13.41955 -13.16377 -12.95398 -12.76895 -12.54091 -12.38090 -12.15569 -11.87634 -11.81525 -11.63174 -11.13715 -10.87672 -10.78246 -10.76355 -10.69940 -10.50125 -10.39153 -10.30773 -9.98326 -9.78829 -9.68114 -9.48090 -8.51634 -8.31819 -6.88920 -6.06151 -3.11924 2.35565 2.74535 3.52992 3.57549 3.58309 3.72558 3.75268 4.21634 4.46034 4.53792 4.59632 4.64819 4.71914 4.86278 4.94660 5.00483 5.06591 5.22948 5.27951 5.30739 5.40702 5.43652 5.46908 5.52289 5.64746 5.65688 5.72326 5.84077 5.85241 5.87194 6.01127 6.06903 6.20714 6.30053 6.38086 6.50561 6.60031 6.95933 7.10077 7.26077 7.53838 7.84182 8.06195 8.53007 9.05658 9.85190 10.41246 11.26215 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.004202 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.805822 B = 6661.499288 C = 7274.303215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 H 0.066 0.934 4 C 0.080 3.920 5 N -0.608 5.608 6 C 0.545 3.455 7 O -0.539 6.539 8 C -0.196 4.196 9 C -0.152 4.152 10 C -0.147 4.147 11 C 0.099 3.901 12 C 0.097 3.903 13 C -0.157 4.157 14 C 0.152 3.848 15 N -0.599 5.599 16 C -0.338 4.338 17 H 0.064 0.936 18 C -0.024 4.024 19 N -0.914 5.914 20 Si 1.065 2.935 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.152 3.848 25 O -0.352 6.352 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.048 0.952 42 H 0.269 0.731 43 H 0.041 0.959 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 -2.722 -20.716 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 H 0.084 0.916 4 C -0.044 4.044 5 N -0.341 5.341 6 C 0.334 3.666 7 O -0.416 6.416 8 C -0.217 4.217 9 C -0.189 4.189 10 C -0.185 4.185 11 C -0.024 4.024 12 C 0.057 3.943 13 C -0.196 4.196 14 C 0.026 3.974 15 N -0.326 5.326 16 C -0.466 4.466 17 H 0.082 0.918 18 C -0.226 4.226 19 N -0.554 5.554 20 Si 0.895 3.105 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.026 3.974 25 O -0.270 6.270 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.992 -1.957 -19.095 19.606 hybrid contribution -0.509 -0.882 -1.442 1.765 sum -4.501 -2.839 -20.537 21.215 Atomic orbital electron populations 1.21700 0.92302 1.03116 1.02801 1.22495 0.95417 0.96071 0.85240 0.91621 1.22545 0.80092 1.02063 0.99657 1.48092 1.06790 1.62523 1.16664 1.19626 0.86213 0.77263 0.83540 1.90696 1.14615 1.55542 1.80774 1.22213 1.03613 1.06489 0.89340 1.22937 1.02971 0.96633 0.96392 1.22970 0.98256 0.98502 0.98736 1.22196 1.00680 0.97294 0.82232 1.22259 0.80816 0.96206 0.95060 1.23354 1.00757 0.95741 0.99709 1.21522 0.98599 0.89683 0.87547 1.44556 1.79111 0.99266 1.09687 1.19709 1.36141 1.05349 0.85360 0.91781 1.25783 0.99863 0.96407 1.00572 1.70767 1.09850 1.41390 1.33423 0.83525 0.75569 0.75941 0.75487 1.21109 1.21972 1.22083 1.21107 0.97368 0.92231 0.86699 1.87939 1.20365 1.76697 1.42043 0.91638 0.91077 0.91144 0.88933 0.90425 0.85817 0.88283 0.87774 0.87879 0.87360 0.87872 0.90842 0.90877 0.91738 0.95301 0.93315 0.91945 0.94092 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.57 37.16 0.36 -1.08 16 2 C 0.07 0.86 3.17 -26.59 -0.08 0.77 16 3 H 0.07 0.89 6.13 -51.93 -0.32 0.57 16 4 C 0.08 0.85 5.82 -3.53 -0.02 0.83 16 5 N -0.61 -8.26 2.91 -172.62 -0.50 -8.76 16 6 C 0.55 7.63 7.50 -10.99 -0.08 7.55 16 7 O -0.54 -9.56 15.74 5.56 0.09 -9.47 16 8 C -0.20 -1.91 5.17 -91.78 -0.47 -2.39 16 9 C -0.15 -1.19 10.24 -26.70 -0.27 -1.46 16 10 C -0.15 -1.30 10.05 -26.70 -0.27 -1.57 16 11 C 0.10 1.56 5.17 -3.85 -0.02 1.54 16 12 C 0.10 1.78 0.83 -89.74 -0.07 1.71 16 13 C -0.16 -3.07 5.92 -24.73 -0.15 -3.21 16 14 C 0.15 3.72 5.39 -2.30 -0.01 3.71 16 15 N -0.60 -15.84 3.27 -170.08 -0.56 -16.40 16 16 C -0.34 -9.84 10.00 -15.06 -0.15 -9.99 16 17 H 0.06 1.85 7.97 -52.49 -0.42 1.43 16 18 C -0.02 -0.70 5.10 -17.43 -0.09 -0.79 16 19 N -0.91 -28.28 13.01 55.49 0.72 -27.56 16 20 Si 1.07 25.92 30.00 -169.99 -5.10 20.82 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.15 3.34 6.61 -3.33 -0.02 3.32 16 25 O -0.35 -6.19 9.87 -35.23 -0.35 -6.54 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.72 5.60 -51.93 -0.29 0.43 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.12 0.95 6.56 -51.92 -0.34 0.61 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 1.15 7.67 -51.93 -0.40 0.75 16 36 H 0.10 1.79 6.89 -51.93 -0.36 1.43 16 37 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.07 1.45 7.86 -51.93 -0.41 1.04 16 39 H 0.06 1.14 5.98 -51.93 -0.31 0.83 16 40 H 0.03 0.76 6.80 -51.93 -0.35 0.41 16 41 H 0.05 1.29 8.08 -51.93 -0.42 0.87 16 42 H 0.27 8.43 6.19 -40.82 -0.25 8.18 16 43 H 0.04 0.86 7.79 -51.93 -0.40 0.46 16 44 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -34.55 343.40 -8.75 -43.30 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.87 Total: 0.51 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.36 Total: -1.08 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.34 Total: -52.73 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.26 Total: -16.01 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.10 Total: 20.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.55 -8.75 -43.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071116488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.701 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds