Wall clock time and date at job start Tue Mar 31 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.51552 * 2 1 4 4 C 1.53280 * 109.51071 * 239.89916 * 2 1 3 5 5 N 1.47169 * 108.55043 * 187.13372 * 4 2 1 6 6 C 1.34776 * 121.06231 * 231.10981 * 5 4 2 7 7 O 1.21278 * 120.00016 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00295 * 0.02562 * 6 5 4 9 9 C 1.52997 * 117.50440 * 248.75327 * 8 6 5 10 10 C 1.52994 * 117.50226 * 180.09089 * 8 6 5 11 11 C 1.47303 * 117.86881 * 51.12664 * 5 4 2 12 12 C 1.52517 * 108.40049 * 310.60735 * 11 5 4 13 13 C 1.54510 * 110.04532 * 287.92361 * 12 11 5 14 14 C 1.55274 * 101.41938 * 206.72084 * 13 12 11 15 15 N 1.47480 * 104.77126 * 36.70152 * 14 13 12 16 16 C 1.36939 * 125.65964 * 155.88546 * 15 14 13 17 17 H 1.08002 * 119.99408 * 199.41849 * 16 15 14 18 18 C 1.38810 * 120.00312 * 19.41472 * 16 15 14 19 19 N 1.31627 * 119.99708 * 28.46131 * 18 16 15 20 20 Si 1.86791 * 120.00109 * 208.45749 * 18 16 15 21 21 H 1.48499 * 109.47194 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47320 * 300.00270 * 20 18 16 23 23 H 1.48501 * 109.47034 * 60.00347 * 20 18 16 24 24 C 1.47188 * 108.67257 * 335.61795 * 15 14 13 25 25 O 1.42065 * 111.11309 * 50.43169 * 12 11 5 26 26 H 1.08995 * 109.47472 * 180.10307 * 1 2 3 27 27 H 1.08997 * 109.46872 * 300.10131 * 1 2 3 28 28 H 1.08999 * 109.47125 * 60.09580 * 1 2 3 29 29 H 1.08998 * 109.61930 * 67.41356 * 4 2 1 30 30 H 1.09005 * 109.62075 * 306.85160 * 4 2 1 31 31 H 1.09010 * 115.54478 * 34.42295 * 8 6 5 32 32 H 1.08999 * 117.49724 * 359.97438 * 9 8 6 33 33 H 1.09002 * 117.50073 * 145.01871 * 9 8 6 34 34 H 1.09002 * 117.50080 * 214.98544 * 10 8 6 35 35 H 1.09000 * 117.49807 * 359.97399 * 10 8 6 36 36 H 1.09002 * 109.67975 * 190.87944 * 11 5 4 37 37 H 1.09009 * 109.67769 * 70.33199 * 11 5 4 38 38 H 1.09004 * 111.01589 * 324.97370 * 13 12 11 39 39 H 1.09004 * 111.01834 * 88.80844 * 13 12 11 40 40 H 1.08999 * 110.49951 * 277.83790 * 14 13 12 41 41 H 1.09004 * 110.32642 * 155.47132 * 14 13 12 42 42 H 0.97000 * 120.00221 * 5.64559 * 19 18 16 43 43 H 1.08999 * 109.90574 * 121.14190 * 24 15 14 44 44 H 1.09006 * 109.90548 * 242.21210 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5032 -0.8639 -1.1448 6 6 4.3127 -0.4781 -2.1509 7 8 5.5144 -0.6021 -2.0440 8 6 3.7248 0.1075 -3.4089 9 6 3.8264 -0.7233 -4.6896 10 6 4.6959 0.5242 -4.5152 11 6 4.0527 -1.4390 0.0950 12 6 3.4244 -0.7148 1.2812 13 6 3.9930 0.7178 1.3888 14 6 3.8288 1.0006 2.9067 15 7 4.1125 -0.2896 3.5624 16 6 4.5436 -0.4519 4.8520 17 1 5.0182 -1.3750 5.1504 18 6 4.3705 0.5698 5.7755 19 7 3.3677 1.4123 5.6446 20 14 5.5606 0.7491 7.2040 21 1 5.1591 1.9086 8.0403 22 1 5.5356 -0.4866 8.0272 23 1 6.9330 0.9674 6.6805 24 6 3.8491 -1.3739 2.6026 25 8 2.0090 -0.6769 1.1663 26 1 -0.3634 -1.0276 0.0018 27 1 -0.3633 0.5154 0.8891 28 1 -0.3633 0.5123 -0.8908 29 1 1.7925 -0.1435 -2.1378 30 1 1.5837 -1.7116 -1.3143 31 1 2.8287 0.7129 -3.2714 32 1 4.3189 -1.6934 -4.6224 33 1 2.9974 -0.6644 -5.3949 34 1 4.4387 1.4035 -5.1058 35 1 5.7602 0.3752 -4.3330 36 1 5.1342 -1.3049 0.1140 37 1 3.8131 -2.5012 0.1447 38 1 5.0419 0.7453 1.0933 39 1 3.4039 1.4178 0.7962 40 1 2.8110 1.3224 3.1271 41 1 4.5447 1.7561 3.2307 42 1 2.7032 1.2716 4.9521 43 1 4.7539 -1.9623 2.4500 44 1 3.0491 -2.0135 2.9756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071116488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:41 Heat of formation + Delta-G solvation = -40.693496 kcal Electronic energy + Delta-G solvation = -25214.268930 eV Core-core repulsion = 21746.610978 eV Total energy + Delta-G solvation = -3467.657952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01105 -40.42376 -38.21783 -37.12918 -35.91409 -34.98375 -33.01629 -31.08940 -30.37385 -27.84190 -27.37904 -26.05837 -24.13806 -23.34904 -23.25971 -22.11979 -20.87091 -19.97559 -19.60439 -18.71363 -18.08156 -17.20124 -16.95882 -16.27123 -16.04813 -15.87100 -15.65943 -15.48578 -15.24657 -14.94212 -14.69335 -14.34099 -13.92364 -13.76675 -13.63139 -13.14351 -13.04192 -12.93367 -12.70863 -12.60544 -12.44812 -12.41855 -12.37682 -11.95205 -11.90574 -11.72503 -11.59652 -11.50039 -11.43414 -11.05981 -10.87144 -10.55965 -9.63981 -9.08915 -8.38622 -5.41838 1.36730 1.55117 1.63973 1.71539 1.83160 2.46014 2.62483 2.88315 3.13326 3.24217 3.40166 3.43970 3.61955 3.75098 3.77098 3.82867 3.96030 3.98062 4.08599 4.11195 4.24469 4.29950 4.39682 4.50343 4.55042 4.63199 4.66205 4.72988 4.74464 4.78372 4.88189 4.91344 4.96364 5.03130 5.04392 5.11233 5.20741 5.23425 5.30127 5.61661 6.21065 6.25175 6.26873 6.81705 7.01451 7.63124 8.22028 8.92383 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.004202 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.805822 B = 6661.499288 C = 7274.303215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.056 3.944 3 H 0.058 0.942 4 C 0.083 3.917 5 N -0.608 5.608 6 C 0.537 3.463 7 O -0.587 6.587 8 C -0.203 4.203 9 C -0.132 4.132 10 C -0.154 4.154 11 C 0.107 3.893 12 C 0.115 3.885 13 C -0.139 4.139 14 C 0.159 3.841 15 N -0.621 5.621 16 C -0.354 4.354 17 H 0.062 0.938 18 C -0.076 4.076 19 N -0.939 5.939 20 Si 1.119 2.881 21 H -0.289 1.289 22 H -0.271 1.271 23 H -0.281 1.281 24 C 0.146 3.854 25 O -0.377 6.377 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.006 0.994 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.050 0.950 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 -2.943 -23.423 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.002 4.002 3 H 0.076 0.924 4 C -0.038 4.038 5 N -0.340 5.340 6 C 0.328 3.672 7 O -0.468 6.468 8 C -0.223 4.223 9 C -0.169 4.169 10 C -0.191 4.191 11 C -0.017 4.017 12 C 0.074 3.926 13 C -0.178 4.178 14 C 0.033 3.967 15 N -0.348 5.348 16 C -0.482 4.482 17 H 0.080 0.920 18 C -0.272 4.272 19 N -0.581 5.581 20 Si 0.943 3.057 21 H -0.215 1.215 22 H -0.197 1.197 23 H -0.207 1.207 24 C 0.020 3.980 25 O -0.297 6.297 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.151 0.849 30 H 0.111 0.889 31 H 0.172 0.828 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.023 0.977 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.160 -2.204 -21.843 22.552 hybrid contribution -0.200 -0.842 -0.638 1.075 sum -5.360 -3.046 -22.481 23.311 Atomic orbital electron populations 1.21733 0.89989 1.03818 1.03771 1.22884 0.97188 0.95512 0.84625 0.92391 1.22754 0.77908 1.03376 0.99779 1.48189 1.08194 1.62052 1.15571 1.20466 0.85705 0.76383 0.84631 1.90677 1.16848 1.57432 1.81797 1.22287 1.04727 1.07754 0.87578 1.23066 1.03237 0.95426 0.95197 1.23045 0.96881 1.00419 0.98779 1.21871 0.99426 0.97766 0.82591 1.21877 0.81876 0.94680 0.94153 1.23193 1.01076 0.97474 0.96035 1.21352 0.96161 0.88411 0.90747 1.44831 1.79140 1.01139 1.09729 1.20028 1.35900 1.05458 0.86800 0.92047 1.27308 1.00554 0.96049 1.03299 1.70893 1.10819 1.42575 1.33812 0.82819 0.73697 0.76532 0.72700 1.21457 1.19659 1.20721 1.21244 0.97417 0.91400 0.87904 1.87908 1.19316 1.77480 1.44949 0.91054 0.93121 0.87155 0.84883 0.88883 0.82764 0.89592 0.84258 0.85200 0.90088 0.89720 0.89563 0.91278 0.89585 0.97659 0.96375 0.93670 0.93204 0.95608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.57 71.98 0.69 -1.68 16 2 C 0.06 1.30 3.17 30.69 0.10 1.40 16 3 H 0.06 1.45 6.13 -2.39 -0.01 1.43 16 4 C 0.08 1.46 5.82 86.35 0.50 1.96 16 5 N -0.61 -15.23 2.91 -818.43 -2.38 -17.61 16 6 C 0.54 14.09 7.50 87.66 0.66 14.75 16 7 O -0.59 -20.83 15.74 -3.02 -0.05 -20.88 16 8 C -0.20 -3.23 5.17 -11.54 -0.06 -3.29 16 9 C -0.13 -1.55 10.24 30.62 0.31 -1.24 16 10 C -0.15 -2.29 10.05 30.61 0.31 -1.99 16 11 C 0.11 3.33 5.17 86.07 0.44 3.78 16 12 C 0.12 4.23 0.83 -10.22 -0.01 4.22 16 13 C -0.14 -5.54 5.92 31.89 0.19 -5.35 16 14 C 0.16 8.15 5.39 86.97 0.47 8.62 16 15 N -0.62 -34.19 3.27 -692.01 -2.26 -36.45 16 16 C -0.35 -21.25 10.00 84.03 0.84 -20.41 16 17 H 0.06 3.63 7.97 -2.91 -0.02 3.61 16 18 C -0.08 -4.55 5.10 84.86 0.43 -4.12 16 19 N -0.94 -60.22 13.01 21.65 0.28 -59.94 16 20 Si 1.12 53.07 30.00 68.60 2.06 55.13 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C 0.15 6.59 6.61 86.47 0.57 7.16 16 25 O -0.38 -13.08 9.87 -148.97 -1.47 -14.55 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.13 1.28 5.60 -2.39 -0.01 1.27 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.15 1.49 6.56 -2.38 -0.02 1.47 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.67 7.67 -2.39 -0.02 1.66 16 36 H 0.08 2.97 6.89 -2.39 -0.02 2.96 16 37 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.07 2.80 7.86 -2.39 -0.02 2.78 16 39 H 0.09 3.02 5.98 -2.39 -0.01 3.01 16 40 H 0.01 0.31 6.80 -2.39 -0.02 0.30 16 41 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 42 H 0.25 16.67 6.19 -92.71 -0.57 16.09 16 43 H 0.05 2.15 7.79 -2.39 -0.02 2.13 16 44 H 0.03 1.23 8.07 -2.38 -0.02 1.21 16 Total: -1.00 -80.23 343.40 2.81 -77.42 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.18 Total: 13.05 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.45 Total: 3.83 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -4.36 Total: -114.00 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.52 Total: -35.42 kcal Atomic # 14 Polarization: 53.07 SS G_CDS: 2.06 Total: 55.13 kcal Total: -80.23 2.81 -77.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071116488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.729 kcal (2) G-P(sol) polarization free energy of solvation -80.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds