Wall clock time and date at job start Tue Mar 31 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.51665 * 2 1 4 4 C 1.53283 * 109.51374 * 120.10506 * 2 1 3 5 5 N 1.47157 * 108.54464 * 172.80028 * 4 2 1 6 6 C 1.34768 * 121.06096 * 128.85975 * 5 4 2 7 7 O 1.21285 * 120.00240 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00241 * 0.02904 * 6 5 4 9 9 C 1.53004 * 117.49878 * 248.62117 * 8 6 5 10 10 C 1.52998 * 60.00117 * 252.50692 * 9 8 6 11 11 C 1.47311 * 117.88054 * 308.88334 * 5 4 2 12 12 C 1.52517 * 108.37893 * 49.41665 * 11 5 4 13 13 C 1.54519 * 110.06010 * 72.02178 * 12 11 5 14 14 C 1.55031 * 101.51818 * 153.09779 * 13 12 11 15 15 N 1.47485 * 104.90031 * 323.62383 * 14 13 12 16 16 C 1.36935 * 125.66117 * 204.01841 * 15 14 13 17 17 H 1.07996 * 119.99810 * 163.26488 * 16 15 14 18 18 C 1.38809 * 120.00043 * 343.28018 * 16 15 14 19 19 N 1.31620 * 119.99862 * 332.05848 * 18 16 15 20 20 Si 1.86803 * 120.00205 * 151.79123 * 18 16 15 21 21 H 1.48508 * 109.47031 * 180.27222 * 20 18 16 22 22 H 1.48498 * 109.46886 * 300.26833 * 20 18 16 23 23 H 1.48491 * 109.47203 * 60.26952 * 20 18 16 24 24 C 1.47186 * 108.67343 * 24.28929 * 15 14 13 25 25 O 1.42064 * 111.09408 * 309.51499 * 12 11 5 26 26 H 1.09001 * 109.46359 * 299.89684 * 1 2 3 27 27 H 1.08990 * 109.47182 * 59.89603 * 1 2 3 28 28 H 1.09001 * 109.46920 * 179.90513 * 1 2 3 29 29 H 1.09003 * 109.62866 * 53.08036 * 4 2 1 30 30 H 1.09000 * 109.62175 * 292.51564 * 4 2 1 31 31 H 1.09003 * 115.55351 * 34.32247 * 8 6 5 32 32 H 1.09002 * 117.49885 * 359.97438 * 9 8 6 33 33 H 1.08994 * 117.50125 * 145.01773 * 9 8 6 34 34 H 1.09006 * 117.50084 * 252.51387 * 10 9 8 35 35 H 1.08995 * 117.52461 * 107.47718 * 10 9 8 36 36 H 1.08993 * 109.68314 * 289.69547 * 11 5 4 37 37 H 1.08998 * 109.71371 * 169.15182 * 11 5 4 38 38 H 1.09004 * 111.01602 * 35.04476 * 13 12 11 39 39 H 1.08993 * 111.01859 * 271.16192 * 13 12 11 40 40 H 1.09001 * 110.35073 * 204.76789 * 14 13 12 41 41 H 1.09000 * 110.44364 * 82.52862 * 14 13 12 42 42 H 0.97001 * 119.99959 * 353.69870 * 19 18 16 43 43 H 1.09005 * 109.90845 * 117.59343 * 24 15 14 44 44 H 1.08998 * 109.90677 * 238.85518 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0421 -0.7247 1.2499 5 7 3.5031 -0.8653 1.1438 6 6 4.3135 -0.4793 2.1490 7 8 5.5152 -0.6035 2.0409 8 6 3.7269 0.1067 3.4074 9 6 3.9808 1.5905 3.6808 10 6 4.6993 0.5256 4.5118 11 6 4.0515 -1.4410 -0.0963 12 6 3.4234 -0.7158 -1.2819 13 6 3.9923 0.7169 -1.3888 14 6 3.8336 1.0007 -2.9046 15 7 4.1107 -0.2896 -3.5631 16 6 4.5414 -0.4514 -4.8529 17 1 4.9718 -1.3916 -5.1644 18 6 4.4249 0.5930 -5.7597 19 7 3.4705 1.4876 -5.6140 20 14 5.6273 0.7332 -7.1825 21 1 5.2939 1.9299 -7.9962 22 1 7.0082 0.8641 -6.6524 23 1 5.5354 -0.4828 -8.0297 24 6 3.8413 -1.3747 -2.6058 25 8 2.0080 -0.6775 -1.1664 26 1 -0.3632 0.5123 0.8910 27 1 -0.3633 0.5154 -0.8890 28 1 -0.3633 -1.0277 -0.0017 29 1 1.5831 -1.7112 1.3150 30 1 1.7937 -0.1431 2.1377 31 1 2.7647 -0.3043 3.7132 32 1 4.5726 2.1427 2.9508 33 1 3.1857 2.1560 4.1665 34 1 4.3768 0.3904 5.5443 35 1 5.7634 0.3768 4.3285 36 1 3.8106 -2.5028 -0.1459 37 1 5.1332 -1.3085 -0.1161 38 1 5.0414 0.7439 -1.0939 39 1 3.4032 1.4167 -0.7963 40 1 4.5534 1.7531 -3.2268 41 1 2.8181 1.3290 -3.1262 42 1 2.7941 1.3680 -4.9292 43 1 3.0357 -2.0073 -2.9789 44 1 4.7428 -1.9682 -2.4542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071116489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:45 Heat of formation + Delta-G solvation = -17.513722 kcal Electronic energy + Delta-G solvation = -25295.520540 eV Core-core repulsion = 21828.867738 eV Total energy + Delta-G solvation = -3466.652802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80370 -39.20436 -36.60272 -36.30851 -34.70847 -33.27682 -31.43093 -29.35213 -28.83326 -26.57447 -26.16675 -24.22070 -22.99724 -22.65945 -22.03441 -20.22533 -19.62446 -18.84744 -17.73404 -17.53483 -16.73361 -16.09539 -15.62906 -15.17524 -14.72065 -14.49721 -14.37640 -13.77859 -13.68193 -13.41302 -13.15345 -12.92170 -12.75487 -12.52655 -12.37283 -12.17420 -11.87601 -11.80742 -11.64520 -11.13104 -10.88028 -10.76814 -10.74714 -10.70040 -10.48430 -10.39501 -10.31260 -9.98086 -9.78860 -9.68533 -9.47795 -8.51996 -8.33087 -6.90894 -6.05274 -3.10084 2.36034 2.73797 3.53152 3.57888 3.61027 3.73233 3.75438 4.22317 4.48010 4.55892 4.60718 4.64346 4.75155 4.84547 4.94383 5.02086 5.07376 5.21715 5.30920 5.32185 5.39778 5.42191 5.47629 5.52232 5.65098 5.68529 5.72095 5.84360 5.86773 5.87228 6.00213 6.06836 6.21020 6.30149 6.37778 6.50484 6.59093 6.97195 7.09648 7.26253 7.53597 7.81814 8.06367 8.52333 9.05738 9.85430 10.40303 11.27199 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.004345 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.084029 B = 6442.844429 C = 6975.021859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.067 0.933 4 C 0.080 3.920 5 N -0.608 5.608 6 C 0.545 3.455 7 O -0.539 6.539 8 C -0.196 4.196 9 C -0.152 4.152 10 C -0.148 4.148 11 C 0.099 3.901 12 C 0.097 3.903 13 C -0.157 4.157 14 C 0.152 3.848 15 N -0.600 5.600 16 C -0.336 4.336 17 H 0.066 0.934 18 C -0.025 4.025 19 N -0.917 5.917 20 Si 1.065 2.935 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.153 3.847 25 O -0.352 6.352 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.269 0.731 43 H 0.039 0.961 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -1.928 20.266 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 H 0.084 0.916 4 C -0.044 4.044 5 N -0.341 5.341 6 C 0.334 3.666 7 O -0.416 6.416 8 C -0.217 4.217 9 C -0.189 4.189 10 C -0.185 4.185 11 C -0.024 4.024 12 C 0.057 3.943 13 C -0.195 4.195 14 C 0.027 3.973 15 N -0.327 5.327 16 C -0.464 4.464 17 H 0.084 0.916 18 C -0.227 4.227 19 N -0.558 5.558 20 Si 0.894 3.106 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.027 3.973 25 O -0.271 6.271 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.086 -1.164 18.669 19.146 hybrid contribution -0.577 -1.003 1.464 1.866 sum -4.663 -2.167 20.133 20.779 Atomic orbital electron populations 1.21703 0.92330 1.03086 1.02803 1.22480 0.95386 0.96082 0.85160 0.91564 1.22536 0.80101 1.01933 0.99804 1.48082 1.06798 1.62584 1.16641 1.19644 0.86217 0.77280 0.83500 1.90698 1.14664 1.55402 1.80859 1.22203 1.02409 1.00419 0.96675 1.22951 1.03404 0.89403 1.03144 1.22954 0.99037 1.01406 0.95090 1.22183 1.00692 0.97282 0.82228 1.22279 0.80828 0.96187 0.95051 1.23311 1.00726 0.95753 0.99734 1.21476 0.98619 0.89692 0.87532 1.44567 1.79136 0.99294 1.09725 1.19736 1.37872 1.03055 0.85736 0.91625 1.25746 1.00443 0.95746 1.00720 1.70765 1.11490 1.39637 1.33881 0.83535 0.75685 0.75871 0.75497 1.21103 1.22113 1.22000 1.21100 0.97400 0.92166 0.86665 1.87946 1.20388 1.76681 1.42081 0.91135 0.91089 0.91667 0.90529 0.88894 0.85872 0.88119 0.87714 0.87943 0.87391 0.90839 0.87874 0.90942 0.91679 0.93176 0.95386 0.91930 0.94338 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.57 37.16 0.36 -1.08 16 2 C 0.07 0.87 3.17 -26.58 -0.08 0.79 16 3 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 4 C 0.08 0.85 5.75 -3.54 -0.02 0.83 16 5 N -0.61 -8.26 2.91 -172.63 -0.50 -8.76 16 6 C 0.55 7.63 7.50 -10.99 -0.08 7.55 16 7 O -0.54 -9.56 15.74 5.55 0.09 -9.47 16 8 C -0.20 -1.91 4.96 -91.77 -0.46 -2.37 16 9 C -0.15 -1.29 10.23 -26.73 -0.27 -1.56 16 10 C -0.15 -1.30 10.04 -26.73 -0.27 -1.57 16 11 C 0.10 1.56 5.18 -3.85 -0.02 1.54 16 12 C 0.10 1.77 0.83 -89.72 -0.07 1.70 16 13 C -0.16 -3.05 5.91 -24.86 -0.15 -3.20 16 14 C 0.15 3.72 5.30 -2.43 -0.01 3.71 16 15 N -0.60 -15.85 3.30 -170.22 -0.56 -16.41 16 16 C -0.34 -9.79 10.02 -15.06 -0.15 -9.94 16 17 H 0.07 1.89 7.97 -52.49 -0.42 1.47 16 18 C -0.02 -0.73 5.09 -17.43 -0.09 -0.81 16 19 N -0.92 -28.36 12.92 55.49 0.72 -27.64 16 20 Si 1.06 25.91 30.00 -169.99 -5.10 20.81 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.15 3.35 6.62 -3.32 -0.02 3.33 16 25 O -0.35 -6.18 9.86 -35.23 -0.35 -6.53 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.72 5.82 -51.93 -0.30 0.42 16 31 H 0.12 0.90 6.90 -51.93 -0.36 0.54 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.11 1.15 7.67 -51.93 -0.40 0.75 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.79 6.89 -51.93 -0.36 1.43 16 38 H 0.07 1.43 7.86 -51.93 -0.41 1.03 16 39 H 0.06 1.15 5.98 -51.93 -0.31 0.84 16 40 H 0.05 1.33 7.95 -51.93 -0.41 0.92 16 41 H 0.03 0.74 6.80 -51.93 -0.35 0.39 16 42 H 0.27 8.41 6.06 -40.82 -0.25 8.16 16 43 H 0.04 0.88 8.06 -51.93 -0.42 0.46 16 44 H 0.04 0.87 7.79 -51.93 -0.40 0.46 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -34.52 343.25 -8.76 -43.29 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.89 Total: 0.63 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.34 Total: -1.10 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.35 Total: -52.81 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.26 Total: -16.00 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.10 Total: 20.81 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.52 -8.76 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071116489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.775 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds