Wall clock time and date at job start Tue Mar 31 2020 07:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.51665 * 2 1 4 4 C 1.53283 * 109.51374 * 120.10506 * 2 1 3 5 5 N 1.47157 * 108.54464 * 172.80028 * 4 2 1 6 6 C 1.34768 * 121.06096 * 128.85975 * 5 4 2 7 7 O 1.21285 * 120.00240 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00241 * 0.02904 * 6 5 4 9 9 C 1.53004 * 117.49878 * 248.62117 * 8 6 5 10 10 C 1.52998 * 60.00117 * 252.50692 * 9 8 6 11 11 C 1.47311 * 117.88054 * 308.88334 * 5 4 2 12 12 C 1.52517 * 108.37893 * 49.41665 * 11 5 4 13 13 C 1.54519 * 110.06010 * 72.02178 * 12 11 5 14 14 C 1.55031 * 101.51818 * 153.09779 * 13 12 11 15 15 N 1.47485 * 104.90031 * 323.62383 * 14 13 12 16 16 C 1.36935 * 125.66117 * 204.01841 * 15 14 13 17 17 H 1.07996 * 119.99810 * 163.26488 * 16 15 14 18 18 C 1.38809 * 120.00043 * 343.28018 * 16 15 14 19 19 N 1.31620 * 119.99862 * 332.05848 * 18 16 15 20 20 Si 1.86803 * 120.00205 * 151.79123 * 18 16 15 21 21 H 1.48508 * 109.47031 * 180.27222 * 20 18 16 22 22 H 1.48498 * 109.46886 * 300.26833 * 20 18 16 23 23 H 1.48491 * 109.47203 * 60.26952 * 20 18 16 24 24 C 1.47186 * 108.67343 * 24.28929 * 15 14 13 25 25 O 1.42064 * 111.09408 * 309.51499 * 12 11 5 26 26 H 1.09001 * 109.46359 * 299.89684 * 1 2 3 27 27 H 1.08990 * 109.47182 * 59.89603 * 1 2 3 28 28 H 1.09001 * 109.46920 * 179.90513 * 1 2 3 29 29 H 1.09003 * 109.62866 * 53.08036 * 4 2 1 30 30 H 1.09000 * 109.62175 * 292.51564 * 4 2 1 31 31 H 1.09003 * 115.55351 * 34.32247 * 8 6 5 32 32 H 1.09002 * 117.49885 * 359.97438 * 9 8 6 33 33 H 1.08994 * 117.50125 * 145.01773 * 9 8 6 34 34 H 1.09006 * 117.50084 * 252.51387 * 10 9 8 35 35 H 1.08995 * 117.52461 * 107.47718 * 10 9 8 36 36 H 1.08993 * 109.68314 * 289.69547 * 11 5 4 37 37 H 1.08998 * 109.71371 * 169.15182 * 11 5 4 38 38 H 1.09004 * 111.01602 * 35.04476 * 13 12 11 39 39 H 1.08993 * 111.01859 * 271.16192 * 13 12 11 40 40 H 1.09001 * 110.35073 * 204.76789 * 14 13 12 41 41 H 1.09000 * 110.44364 * 82.52862 * 14 13 12 42 42 H 0.97001 * 119.99959 * 353.69870 * 19 18 16 43 43 H 1.09005 * 109.90845 * 117.59343 * 24 15 14 44 44 H 1.08998 * 109.90677 * 238.85518 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0421 -0.7247 1.2499 5 7 3.5031 -0.8653 1.1438 6 6 4.3135 -0.4793 2.1490 7 8 5.5152 -0.6035 2.0409 8 6 3.7269 0.1067 3.4074 9 6 3.9808 1.5905 3.6808 10 6 4.6993 0.5256 4.5118 11 6 4.0515 -1.4410 -0.0963 12 6 3.4234 -0.7158 -1.2819 13 6 3.9923 0.7169 -1.3888 14 6 3.8336 1.0007 -2.9046 15 7 4.1107 -0.2896 -3.5631 16 6 4.5414 -0.4514 -4.8529 17 1 4.9718 -1.3916 -5.1644 18 6 4.4249 0.5930 -5.7597 19 7 3.4705 1.4876 -5.6140 20 14 5.6273 0.7332 -7.1825 21 1 5.2939 1.9299 -7.9962 22 1 7.0082 0.8641 -6.6524 23 1 5.5354 -0.4828 -8.0297 24 6 3.8413 -1.3747 -2.6058 25 8 2.0080 -0.6775 -1.1664 26 1 -0.3632 0.5123 0.8910 27 1 -0.3633 0.5154 -0.8890 28 1 -0.3633 -1.0277 -0.0017 29 1 1.5831 -1.7112 1.3150 30 1 1.7937 -0.1431 2.1377 31 1 2.7647 -0.3043 3.7132 32 1 4.5726 2.1427 2.9508 33 1 3.1857 2.1560 4.1665 34 1 4.3768 0.3904 5.5443 35 1 5.7634 0.3768 4.3285 36 1 3.8106 -2.5028 -0.1459 37 1 5.1332 -1.3085 -0.1161 38 1 5.0414 0.7439 -1.0939 39 1 3.4032 1.4167 -0.7963 40 1 4.5534 1.7531 -3.2268 41 1 2.8181 1.3290 -3.1262 42 1 2.7941 1.3680 -4.9292 43 1 3.0357 -2.0073 -2.9789 44 1 4.7428 -1.9682 -2.4542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071116489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:44 Heat of formation + Delta-G solvation = -40.609354 kcal Electronic energy + Delta-G solvation = -25296.522042 eV Core-core repulsion = 21828.867738 eV Total energy + Delta-G solvation = -3467.654304 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01221 -40.42527 -38.22884 -37.13680 -35.91430 -34.98606 -33.00283 -31.11350 -30.37548 -27.83199 -27.38076 -26.06530 -24.14737 -23.31583 -23.29157 -22.10354 -20.91478 -19.94264 -19.62423 -18.67092 -18.08306 -17.19419 -16.90199 -16.46471 -16.01467 -15.77174 -15.68999 -15.40814 -15.23561 -15.03593 -14.69399 -14.31403 -13.93619 -13.78178 -13.60070 -13.13706 -13.06265 -12.94267 -12.69115 -12.60305 -12.44821 -12.41028 -12.37833 -11.95379 -11.90684 -11.71087 -11.59677 -11.51477 -11.44270 -11.05861 -10.87973 -10.57174 -9.63884 -9.10502 -8.37943 -5.39809 1.36322 1.55158 1.64124 1.70924 1.83132 2.46715 2.62833 2.88932 3.14038 3.24493 3.39991 3.43546 3.61768 3.75435 3.78585 3.81834 3.96202 3.99006 4.09042 4.14930 4.23815 4.29093 4.37687 4.50778 4.54815 4.63191 4.65884 4.72673 4.74156 4.78574 4.87380 4.91791 4.96872 5.01982 5.04769 5.11035 5.20634 5.23736 5.30464 5.59798 6.21050 6.25212 6.26941 6.81625 7.01434 7.63590 8.21412 8.93597 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.004345 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.084029 B = 6442.844429 C = 6975.021859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 H 0.058 0.942 4 C 0.083 3.917 5 N -0.608 5.608 6 C 0.537 3.463 7 O -0.587 6.587 8 C -0.199 4.199 9 C -0.143 4.143 10 C -0.148 4.148 11 C 0.107 3.893 12 C 0.115 3.885 13 C -0.139 4.139 14 C 0.160 3.840 15 N -0.622 5.622 16 C -0.352 4.352 17 H 0.064 0.936 18 C -0.077 4.077 19 N -0.942 5.942 20 Si 1.119 2.881 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.271 1.271 24 C 0.146 3.854 25 O -0.377 6.377 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.018 0.982 41 H 0.005 0.995 42 H 0.254 0.746 43 H 0.027 0.973 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -2.228 22.971 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 H 0.076 0.924 4 C -0.039 4.039 5 N -0.340 5.340 6 C 0.328 3.672 7 O -0.468 6.468 8 C -0.219 4.219 9 C -0.180 4.180 10 C -0.186 4.186 11 C -0.017 4.017 12 C 0.074 3.926 13 C -0.177 4.177 14 C 0.034 3.966 15 N -0.349 5.349 16 C -0.480 4.480 17 H 0.082 0.918 18 C -0.273 4.273 19 N -0.585 5.585 20 Si 0.942 3.058 21 H -0.215 1.215 22 H -0.208 1.208 23 H -0.197 1.197 24 C 0.021 3.979 25 O -0.297 6.297 26 H 0.128 0.872 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.178 0.822 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.036 0.964 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.324 -1.487 21.412 22.114 hybrid contribution -0.246 -0.923 0.649 1.155 sum -5.569 -2.410 22.061 22.881 Atomic orbital electron populations 1.21734 0.89992 1.03813 1.03764 1.22863 0.97171 0.95484 0.84571 0.92434 1.22754 0.77895 1.03321 0.99920 1.48180 1.08219 1.62096 1.15536 1.20495 0.85709 0.76409 0.84620 1.90679 1.16923 1.57250 1.81914 1.22298 1.03859 1.01191 0.94586 1.23055 1.03814 0.88742 1.02379 1.23031 0.97593 1.01429 0.96508 1.21863 0.99419 0.97788 0.82593 1.21895 0.81897 0.94631 0.94153 1.23146 1.01003 0.97519 0.96056 1.21297 0.96140 0.88418 0.90713 1.44843 1.79178 1.01162 1.09766 1.20060 1.37619 1.03182 0.87158 0.91835 1.27267 1.01194 0.95383 1.03431 1.70888 1.12450 1.40788 1.34353 0.82825 0.73766 0.76426 0.72768 1.21482 1.20767 1.19667 1.21241 0.97457 0.91347 0.87859 1.87915 1.19316 1.77449 1.44974 0.87180 0.93123 0.91037 0.88823 0.84864 0.82214 0.90347 0.84283 0.84817 0.90123 0.89494 0.89766 0.91411 0.89560 0.96375 0.97728 0.93610 0.95472 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.57 71.98 0.69 -1.66 16 2 C 0.06 1.33 3.17 30.69 0.10 1.42 16 3 H 0.06 1.44 6.13 -2.39 -0.01 1.43 16 4 C 0.08 1.43 5.75 86.35 0.50 1.93 16 5 N -0.61 -15.19 2.91 -818.47 -2.38 -17.57 16 6 C 0.54 14.06 7.50 87.66 0.66 14.72 16 7 O -0.59 -20.87 15.74 -3.04 -0.05 -20.91 16 8 C -0.20 -3.14 4.96 -11.54 -0.06 -3.19 16 9 C -0.14 -1.94 10.23 30.60 0.31 -1.63 16 10 C -0.15 -2.19 10.04 30.60 0.31 -1.89 16 11 C 0.11 3.32 5.18 86.06 0.45 3.77 16 12 C 0.12 4.22 0.83 -10.21 -0.01 4.22 16 13 C -0.14 -5.52 5.91 31.81 0.19 -5.33 16 14 C 0.16 8.21 5.30 86.89 0.46 8.67 16 15 N -0.62 -34.21 3.30 -692.45 -2.28 -36.50 16 16 C -0.35 -21.13 10.02 84.03 0.84 -20.29 16 17 H 0.06 3.75 7.97 -2.91 -0.02 3.72 16 18 C -0.08 -4.62 5.09 84.86 0.43 -4.18 16 19 N -0.94 -60.43 12.92 21.65 0.28 -60.15 16 20 Si 1.12 53.08 30.00 68.60 2.06 55.14 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C 0.15 6.60 6.62 86.47 0.57 7.17 16 25 O -0.38 -13.01 9.86 -148.97 -1.47 -14.48 16 26 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.13 1.27 5.82 -2.39 -0.01 1.26 16 31 H 0.16 1.35 6.90 -2.39 -0.02 1.33 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.13 1.13 8.14 -2.38 -0.02 1.12 16 35 H 0.08 1.66 7.67 -2.39 -0.02 1.64 16 36 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.08 2.96 6.89 -2.39 -0.02 2.94 16 38 H 0.07 2.75 7.86 -2.38 -0.02 2.74 16 39 H 0.09 3.04 5.98 -2.39 -0.01 3.02 16 40 H 0.02 1.01 7.95 -2.39 -0.02 0.99 16 41 H 0.00 0.28 6.80 -2.39 -0.02 0.26 16 42 H 0.25 16.67 6.06 -92.71 -0.56 16.10 16 43 H 0.03 1.28 8.06 -2.38 -0.02 1.26 16 44 H 0.05 2.15 7.79 -2.39 -0.02 2.13 16 Total: -1.00 -80.33 343.25 2.79 -77.54 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 1.19 Total: 13.21 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.44 Total: 3.73 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -4.39 Total: -114.22 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.52 Total: -35.40 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.06 Total: 55.14 kcal Total: -80.33 2.79 -77.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071116489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.931 kcal (2) G-P(sol) polarization free energy of solvation -80.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds