Wall clock time and date at job start Tue Mar 31 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08998 * 109.69970 * 2 1 4 4 C 1.53192 * 109.58375 * 120.35439 * 2 1 3 5 5 C 1.53036 * 109.31071 * 174.42245 * 4 2 1 6 6 C 1.53037 * 109.54025 * 298.63658 * 5 4 2 7 7 H 1.08999 * 109.50097 * 301.41509 * 6 5 4 8 8 N 1.46501 * 109.50122 * 181.31591 * 6 5 4 9 9 C 1.34774 * 120.00236 * 154.99831 * 8 6 5 10 10 O 1.21735 * 120.00012 * 0.02562 * 9 8 6 11 11 C 1.41794 * 119.99987 * 180.02562 * 9 8 6 12 12 C 1.33458 * 118.78741 * 179.73540 * 11 9 8 13 13 O 1.34349 * 123.08348 * 180.11450 * 12 11 9 14 14 C 1.45359 * 117.54183 * 344.21628 * 13 12 11 15 15 C 1.53486 * 108.26443 * 47.22671 * 14 13 12 16 16 C 1.50411 * 118.78813 * 0.02562 * 11 9 8 17 17 C 1.53192 * 109.31288 * 61.36247 * 6 5 4 18 18 N 1.46919 * 109.58629 * 239.64781 * 2 1 3 19 19 C 1.36935 * 120.63636 * 6.57614 * 18 2 1 20 20 H 1.08009 * 119.99985 * 330.89888 * 19 18 2 21 21 C 1.38812 * 120.00162 * 150.88790 * 19 18 2 22 22 N 1.31619 * 120.00161 * 160.75461 * 21 19 18 23 23 Si 1.86801 * 120.00031 * 340.75218 * 21 19 18 24 24 H 1.48497 * 109.47103 * 92.32523 * 23 21 19 25 25 H 1.48495 * 109.47279 * 212.32737 * 23 21 19 26 26 H 1.48501 * 109.46962 * 332.32609 * 23 21 19 27 27 H 1.09000 * 109.46728 * 180.35052 * 1 2 3 28 28 H 1.08998 * 109.47051 * 300.35786 * 1 2 3 29 29 H 1.09002 * 109.46783 * 60.35703 * 1 2 3 30 30 H 1.09002 * 109.49520 * 54.47175 * 4 2 1 31 31 H 1.09003 * 109.49888 * 294.37690 * 4 2 1 32 32 H 1.08999 * 109.46087 * 178.61659 * 5 4 2 33 33 H 1.08998 * 109.46065 * 58.65905 * 5 4 2 34 34 H 0.97003 * 119.99492 * 335.00213 * 8 6 5 35 35 H 1.08003 * 118.45636 * 0.38543 * 12 11 9 36 36 H 1.08999 * 109.70290 * 287.53050 * 14 13 12 37 37 H 1.09004 * 109.73503 * 166.93697 * 14 13 12 38 38 H 1.09003 * 109.70190 * 177.60518 * 15 14 13 39 39 H 1.09004 * 109.73643 * 57.00686 * 15 14 13 40 40 H 1.09000 * 109.45851 * 282.35587 * 16 11 9 41 41 H 1.09005 * 109.45757 * 42.32041 * 16 11 9 42 42 H 1.08999 * 109.58565 * 65.15383 * 17 6 5 43 43 H 1.09003 * 109.59040 * 185.43427 * 17 6 5 44 44 H 0.97001 * 120.00313 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8480 1.1702 6 6 3.9570 -1.6657 -0.0634 7 1 3.4984 -2.6528 -0.0053 8 7 5.4143 -1.8053 -0.1174 9 6 5.9677 -2.8481 -0.7675 10 8 5.2567 -3.6738 -1.3103 11 6 7.3783 -2.9835 -0.8194 12 6 7.9003 -4.0283 -1.4651 13 8 9.2229 -4.2420 -1.5657 14 6 10.1086 -3.1316 -1.2567 15 6 9.6455 -2.4998 0.0632 16 6 8.2308 -1.9479 -0.1389 17 6 3.4651 -0.9469 -1.3236 18 7 2.0226 -0.6994 -1.1945 19 6 1.1538 -1.1135 -2.1685 20 1 0.1365 -1.3697 -1.9115 21 6 1.5804 -1.2037 -3.4864 22 7 0.9077 -1.9379 -4.3471 23 14 3.1090 -0.2828 -4.0384 24 1 4.2944 -1.1676 -3.9067 25 1 2.9538 0.1289 -5.4567 26 1 3.2941 0.9222 -3.1906 27 1 -0.3633 -1.0277 0.0063 28 1 -0.3633 0.5194 0.8867 29 1 -0.3633 0.5083 -0.8932 30 1 1.6030 -1.7253 1.2913 31 1 1.7660 -0.1668 2.1369 32 1 3.9378 -1.3448 2.0669 33 1 4.0061 0.1473 1.0994 34 1 5.9809 -1.1472 0.3148 35 1 7.2281 -4.7327 -1.9324 36 1 10.0618 -2.3910 -2.0551 37 1 11.1310 -3.4946 -1.1516 38 1 10.3204 -1.6896 0.3395 39 1 9.6363 -3.2548 0.8494 40 1 8.2762 -1.0515 -0.7574 41 1 7.7965 -1.6993 0.8295 42 1 3.9903 0.0021 -1.4316 43 1 3.6542 -1.5706 -2.1974 44 1 1.2060 -2.0013 -5.2679 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071373893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:29 Heat of formation + Delta-G solvation = -39.988279 kcal Electronic energy + Delta-G solvation = -24862.204230 eV Core-core repulsion = 21394.576858 eV Total energy + Delta-G solvation = -3467.627372 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.65921 -39.25171 -37.80014 -34.68181 -34.21007 -32.75184 -31.81980 -30.65129 -30.48674 -26.34759 -25.95737 -25.01115 -24.00098 -22.69099 -21.42643 -20.51304 -19.45697 -18.80688 -17.90201 -16.62657 -16.41676 -15.90602 -15.53319 -15.18264 -14.83464 -14.54806 -14.37766 -14.13591 -13.70455 -13.56774 -13.43492 -13.20623 -13.05217 -12.74118 -12.33411 -12.07708 -11.67036 -11.57466 -11.38952 -11.23224 -11.21980 -10.91832 -10.73541 -10.66518 -10.32417 -10.22629 -9.96396 -9.59945 -9.55026 -9.31615 -8.78591 -8.58155 -8.37976 -6.85299 -5.85350 -3.22911 1.44064 3.01138 3.43760 3.53144 3.55808 3.60025 3.66821 4.34957 4.43448 4.59710 4.63125 4.90663 5.00209 5.00666 5.15605 5.18200 5.28042 5.31368 5.37205 5.50337 5.54516 5.60222 5.74104 5.80854 5.87430 5.97894 6.06665 6.13129 6.16319 6.28051 6.31501 6.38684 6.51874 6.58843 6.70665 6.74125 6.95865 7.03803 7.09599 7.14547 7.88704 8.06891 8.44670 8.63931 9.02920 9.82408 10.18723 11.30323 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.005015 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.644518 B = 5582.452207 C = 6540.077724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.029 0.971 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.126 3.874 7 H 0.091 0.909 8 N -0.725 5.725 9 C 0.564 3.436 10 O -0.547 6.547 11 C -0.313 4.313 12 C 0.153 3.847 13 O -0.312 6.312 14 C 0.051 3.949 15 C -0.156 4.156 16 C -0.073 4.073 17 C 0.122 3.878 18 N -0.598 5.598 19 C -0.260 4.260 20 H 0.092 0.908 21 C 0.029 3.971 22 N -0.907 5.907 23 Si 0.879 3.121 24 H -0.287 1.287 25 H -0.305 1.305 26 H -0.273 1.273 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.392 0.608 35 H 0.182 0.818 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.021 0.979 43 H 0.079 0.921 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.284 2.029 12.258 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.154 4.154 6 C 0.021 3.979 7 H 0.109 0.891 8 N -0.376 5.376 9 C 0.354 3.646 10 O -0.427 6.427 11 C -0.318 4.318 12 C 0.085 3.915 13 O -0.223 6.223 14 C -0.023 4.023 15 C -0.193 4.193 16 C -0.111 4.111 17 C -0.005 4.005 18 N -0.322 5.322 19 C -0.389 4.389 20 H 0.110 0.890 21 C -0.170 4.170 22 N -0.550 5.550 23 Si 0.710 3.290 24 H -0.215 1.215 25 H -0.233 1.233 26 H -0.198 1.198 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.226 0.774 35 H 0.199 0.801 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.097 0.903 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.831 1.224 11.636 20.498 hybrid contribution 1.197 1.119 -0.158 1.646 sum 18.027 2.343 11.478 21.499 Atomic orbital electron populations 1.21812 0.95229 1.01962 1.00426 1.20502 0.93699 0.93293 0.86205 0.95345 1.22049 0.94133 1.01729 0.98809 1.21679 0.97551 0.99502 0.96710 1.21706 0.78380 1.01102 0.96744 0.89099 1.46034 1.08199 1.27055 1.56316 1.16584 0.87620 0.81626 0.78751 1.90874 1.63723 1.42273 1.45856 1.20098 0.95206 1.03700 1.12779 1.23014 0.83164 0.95645 0.89631 1.86266 1.14919 1.38876 1.82224 1.23540 0.93111 0.88466 0.97159 1.22178 0.97455 1.01799 0.97877 1.20264 0.93552 0.96776 1.00478 1.21673 0.85377 0.96750 0.96678 1.44372 1.01670 1.65419 1.20780 1.18905 0.95651 1.38689 0.85614 0.89031 1.25284 0.97286 0.98578 0.95878 1.69813 1.41235 1.39309 1.04607 0.86977 0.84050 0.81218 0.76756 1.21510 1.23303 1.19795 0.92352 0.94137 0.91711 0.91591 0.92274 0.92536 0.92297 0.77419 0.80146 0.90862 0.87469 0.89625 0.90352 0.90725 0.90267 0.96112 0.90308 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.94 37.16 0.30 -2.25 16 2 C 0.17 3.33 3.50 -67.60 -0.24 3.09 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.07 5.37 -26.61 -0.14 -2.22 16 5 C -0.12 -1.78 5.35 -26.69 -0.14 -1.92 16 6 C 0.13 2.40 2.60 -67.81 -0.18 2.23 16 7 H 0.09 2.00 7.58 -51.93 -0.39 1.61 16 8 N -0.72 -11.71 4.99 -56.54 -0.28 -11.99 16 9 C 0.56 10.05 7.50 -14.90 -0.11 9.94 16 10 O -0.55 -12.35 15.58 5.16 0.08 -12.27 16 11 C -0.31 -4.28 5.70 -105.08 -0.60 -4.88 16 12 C 0.15 2.02 10.47 29.06 0.30 2.32 16 13 O -0.31 -3.52 10.47 -14.88 -0.16 -3.67 16 14 C 0.05 0.40 7.16 37.41 0.27 0.66 16 15 C -0.16 -1.12 6.23 -26.38 -0.16 -1.28 16 16 C -0.07 -0.70 5.08 -27.92 -0.14 -0.84 16 17 C 0.12 2.83 3.77 -3.71 -0.01 2.82 16 18 N -0.60 -14.56 2.75 -164.77 -0.45 -15.01 16 19 C -0.26 -7.43 9.04 -15.06 -0.14 -7.56 16 20 H 0.09 2.72 6.40 -52.48 -0.34 2.39 16 21 C 0.03 0.87 5.24 -17.43 -0.09 0.78 16 22 N -0.91 -28.90 13.97 55.49 0.78 -28.13 16 23 Si 0.88 23.75 24.34 -169.99 -4.14 19.61 16 24 H -0.29 -7.86 6.63 56.52 0.37 -7.48 16 25 H -0.30 -8.29 7.11 56.52 0.40 -7.88 16 26 H -0.27 -7.13 6.63 56.52 0.37 -6.76 16 27 H 0.06 1.14 7.44 -51.93 -0.39 0.76 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.31 7.62 -51.93 -0.40 0.92 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.39 4.89 6.71 -40.82 -0.27 4.61 16 35 H 0.18 2.52 7.21 -52.48 -0.38 2.14 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.67 7.15 -51.93 -0.37 0.30 16 42 H 0.02 0.48 7.03 -51.93 -0.37 0.11 16 43 H 0.08 2.14 4.62 -51.93 -0.24 1.90 16 44 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -35.28 337.06 -7.16 -42.44 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.98 Total: 3.06 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.09 Total: 0.89 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.04 Total: -55.14 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.08 Total: -15.95 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.14 Total: 19.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.28 -7.16 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071373893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.452 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds