Wall clock time and date at job start Tue Mar 31 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08998 * 109.69970 * 2 1 4 4 C 1.53192 * 109.58375 * 120.35439 * 2 1 3 5 5 C 1.53036 * 109.31071 * 174.42245 * 4 2 1 6 6 C 1.53037 * 109.54025 * 298.63658 * 5 4 2 7 7 H 1.08999 * 109.50097 * 301.41509 * 6 5 4 8 8 N 1.46501 * 109.50122 * 181.31591 * 6 5 4 9 9 C 1.34774 * 120.00236 * 154.99831 * 8 6 5 10 10 O 1.21735 * 120.00012 * 0.02562 * 9 8 6 11 11 C 1.41794 * 119.99987 * 180.02562 * 9 8 6 12 12 C 1.33458 * 118.78741 * 179.73540 * 11 9 8 13 13 O 1.34349 * 123.08348 * 180.11450 * 12 11 9 14 14 C 1.45359 * 117.54183 * 344.21628 * 13 12 11 15 15 C 1.53486 * 108.26443 * 47.22671 * 14 13 12 16 16 C 1.50411 * 118.78813 * 0.02562 * 11 9 8 17 17 C 1.53192 * 109.31288 * 61.36247 * 6 5 4 18 18 N 1.46919 * 109.58629 * 239.64781 * 2 1 3 19 19 C 1.36935 * 120.63636 * 6.57614 * 18 2 1 20 20 H 1.08009 * 119.99985 * 330.89888 * 19 18 2 21 21 C 1.38812 * 120.00162 * 150.88790 * 19 18 2 22 22 N 1.31619 * 120.00161 * 160.75461 * 21 19 18 23 23 Si 1.86801 * 120.00031 * 340.75218 * 21 19 18 24 24 H 1.48497 * 109.47103 * 92.32523 * 23 21 19 25 25 H 1.48495 * 109.47279 * 212.32737 * 23 21 19 26 26 H 1.48501 * 109.46962 * 332.32609 * 23 21 19 27 27 H 1.09000 * 109.46728 * 180.35052 * 1 2 3 28 28 H 1.08998 * 109.47051 * 300.35786 * 1 2 3 29 29 H 1.09002 * 109.46783 * 60.35703 * 1 2 3 30 30 H 1.09002 * 109.49520 * 54.47175 * 4 2 1 31 31 H 1.09003 * 109.49888 * 294.37690 * 4 2 1 32 32 H 1.08999 * 109.46087 * 178.61659 * 5 4 2 33 33 H 1.08998 * 109.46065 * 58.65905 * 5 4 2 34 34 H 0.97003 * 119.99492 * 335.00213 * 8 6 5 35 35 H 1.08003 * 118.45636 * 0.38543 * 12 11 9 36 36 H 1.08999 * 109.70290 * 287.53050 * 14 13 12 37 37 H 1.09004 * 109.73503 * 166.93697 * 14 13 12 38 38 H 1.09003 * 109.70190 * 177.60518 * 15 14 13 39 39 H 1.09004 * 109.73643 * 57.00686 * 15 14 13 40 40 H 1.09000 * 109.45851 * 282.35587 * 16 11 9 41 41 H 1.09005 * 109.45757 * 42.32041 * 16 11 9 42 42 H 1.08999 * 109.58565 * 65.15383 * 17 6 5 43 43 H 1.09003 * 109.59040 * 185.43427 * 17 6 5 44 44 H 0.97001 * 120.00313 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8480 1.1702 6 6 3.9570 -1.6657 -0.0634 7 1 3.4984 -2.6528 -0.0053 8 7 5.4143 -1.8053 -0.1174 9 6 5.9677 -2.8481 -0.7675 10 8 5.2567 -3.6738 -1.3103 11 6 7.3783 -2.9835 -0.8194 12 6 7.9003 -4.0283 -1.4651 13 8 9.2229 -4.2420 -1.5657 14 6 10.1086 -3.1316 -1.2567 15 6 9.6455 -2.4998 0.0632 16 6 8.2308 -1.9479 -0.1389 17 6 3.4651 -0.9469 -1.3236 18 7 2.0226 -0.6994 -1.1945 19 6 1.1538 -1.1135 -2.1685 20 1 0.1365 -1.3697 -1.9115 21 6 1.5804 -1.2037 -3.4864 22 7 0.9077 -1.9379 -4.3471 23 14 3.1090 -0.2828 -4.0384 24 1 4.2944 -1.1676 -3.9067 25 1 2.9538 0.1289 -5.4567 26 1 3.2941 0.9222 -3.1906 27 1 -0.3633 -1.0277 0.0063 28 1 -0.3633 0.5194 0.8867 29 1 -0.3633 0.5083 -0.8932 30 1 1.6030 -1.7253 1.2913 31 1 1.7660 -0.1668 2.1369 32 1 3.9378 -1.3448 2.0669 33 1 4.0061 0.1473 1.0994 34 1 5.9809 -1.1472 0.3148 35 1 7.2281 -4.7327 -1.9324 36 1 10.0618 -2.3910 -2.0551 37 1 11.1310 -3.4946 -1.1516 38 1 10.3204 -1.6896 0.3395 39 1 9.6363 -3.2548 0.8494 40 1 8.2762 -1.0515 -0.7574 41 1 7.7965 -1.6993 0.8295 42 1 3.9903 0.0021 -1.4316 43 1 3.6542 -1.5706 -2.1974 44 1 1.2060 -2.0013 -5.2679 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071373893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:29 Heat of formation + Delta-G solvation = -66.575453 kcal Electronic energy + Delta-G solvation = -24863.357136 eV Core-core repulsion = 21394.576858 eV Total energy + Delta-G solvation = -3468.780278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75797 -40.49909 -39.35475 -36.16868 -35.23985 -34.61154 -32.78585 -32.60487 -31.86709 -27.94868 -26.85537 -26.66029 -25.18329 -24.32158 -22.60161 -21.98872 -21.08819 -19.84783 -18.95704 -18.50401 -17.82072 -17.15852 -16.91275 -16.45440 -16.34336 -16.04564 -15.69368 -15.31343 -15.12972 -14.95657 -14.67254 -14.60341 -14.33959 -14.03570 -13.76760 -13.63753 -13.44828 -13.01985 -12.71726 -12.54825 -12.52324 -12.30389 -12.07154 -11.80780 -11.76637 -11.72641 -11.62975 -11.41293 -11.31392 -10.89671 -10.77288 -10.17908 -9.54272 -8.86883 -8.17793 -5.49098 0.32250 1.24865 1.27826 1.38170 2.07514 2.34854 2.38091 2.40533 3.07559 3.34242 3.70003 3.72192 3.82696 3.93890 4.03045 4.10910 4.18087 4.26212 4.27088 4.35431 4.42462 4.56499 4.59012 4.66869 4.72111 4.82713 4.87096 4.90878 4.98053 5.00722 5.06745 5.11590 5.15575 5.18432 5.21971 5.26360 5.49212 5.51022 5.64387 5.90225 6.16794 6.17978 6.62795 6.92286 7.32390 7.64220 8.03484 9.01923 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017699 B = 0.005015 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.644518 B = 5582.452207 C = 6540.077724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.157 3.843 3 H 0.047 0.953 4 C -0.121 4.121 5 C -0.106 4.106 6 C 0.136 3.864 7 H 0.051 0.949 8 N -0.709 5.709 9 C 0.556 3.444 10 O -0.609 6.609 11 C -0.324 4.324 12 C 0.161 3.839 13 O -0.318 6.318 14 C 0.040 3.960 15 C -0.148 4.148 16 C -0.073 4.073 17 C 0.121 3.879 18 N -0.614 5.614 19 C -0.236 4.236 20 H 0.068 0.932 21 C -0.036 4.036 22 N -0.958 5.958 23 Si 0.941 3.059 24 H -0.300 1.300 25 H -0.309 1.309 26 H -0.253 1.253 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.414 0.586 35 H 0.160 0.840 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.354 4.624 15.688 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.065 0.935 4 C -0.160 4.160 5 C -0.144 4.144 6 C 0.029 3.971 7 H 0.070 0.930 8 N -0.362 5.362 9 C 0.349 3.651 10 O -0.494 6.494 11 C -0.329 4.329 12 C 0.092 3.908 13 O -0.229 6.229 14 C -0.033 4.033 15 C -0.185 4.185 16 C -0.110 4.110 17 C -0.005 4.005 18 N -0.339 5.339 19 C -0.366 4.366 20 H 0.086 0.914 21 C -0.231 4.231 22 N -0.605 5.605 23 Si 0.772 3.228 24 H -0.229 1.229 25 H -0.238 1.238 26 H -0.177 1.177 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.253 0.747 35 H 0.177 0.823 36 H 0.097 0.903 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.958 3.891 15.149 25.356 hybrid contribution 0.247 0.248 -1.154 1.206 sum 20.205 4.139 13.994 24.924 Atomic orbital electron populations 1.21760 0.94897 1.00900 1.01346 1.20896 0.94224 0.94071 0.85535 0.93515 1.21978 0.94671 1.00896 0.98445 1.21665 0.96921 1.00346 0.95479 1.21334 0.79725 0.99229 0.96771 0.93047 1.45808 1.07276 1.27216 1.55870 1.17288 0.89176 0.81024 0.77661 1.90849 1.65453 1.44561 1.48500 1.20127 0.93330 1.05353 1.14087 1.22796 0.84151 0.94984 0.88834 1.86262 1.13981 1.40784 1.81877 1.23968 0.93566 0.87872 0.97879 1.22185 0.96357 1.02689 0.97250 1.20382 0.94314 0.95602 1.00723 1.21606 0.85082 0.96667 0.97157 1.44577 1.01675 1.66347 1.21337 1.18930 0.95317 1.35909 0.86458 0.91446 1.25900 1.00451 1.00251 0.96472 1.69943 1.43727 1.41987 1.04816 0.85968 0.80425 0.80255 0.76152 1.22888 1.23829 1.17667 0.94479 0.89622 0.94286 0.93416 0.87780 0.89267 0.89633 0.74734 0.82309 0.90310 0.84487 0.86334 0.90435 0.89921 0.88767 0.94921 0.95026 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.94 71.99 0.57 -4.15 16 2 C 0.16 5.80 3.50 44.98 0.16 5.96 16 3 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -3.46 5.37 30.67 0.16 -3.30 16 5 C -0.11 -2.78 5.35 30.62 0.16 -2.62 16 6 C 0.14 5.04 2.60 45.07 0.12 5.15 16 7 H 0.05 2.32 7.58 -2.39 -0.02 2.31 16 8 N -0.71 -21.79 4.99 -450.99 -2.25 -24.05 16 9 C 0.56 19.99 7.50 85.12 0.64 20.62 16 10 O -0.61 -29.16 15.58 -4.46 -0.07 -29.23 16 11 C -0.32 -8.58 5.70 -20.16 -0.11 -8.70 16 12 C 0.16 4.28 10.47 66.74 0.70 4.98 16 13 O -0.32 -6.76 10.47 -76.18 -0.80 -7.56 16 14 C 0.04 0.49 7.16 72.15 0.52 1.01 16 15 C -0.15 -1.52 6.23 30.82 0.19 -1.33 16 16 C -0.07 -1.15 5.08 29.82 0.15 -1.00 16 17 C 0.12 5.61 3.77 86.36 0.33 5.93 16 18 N -0.61 -29.88 2.75 -675.22 -1.86 -31.74 16 19 C -0.24 -13.97 9.04 84.03 0.76 -13.21 16 20 H 0.07 4.23 6.40 -2.91 -0.02 4.22 16 21 C -0.04 -2.29 5.24 84.86 0.44 -1.85 16 22 N -0.96 -64.44 13.97 21.65 0.30 -64.13 16 23 Si 0.94 51.22 24.34 68.60 1.67 52.89 16 24 H -0.30 -16.80 6.63 99.48 0.66 -16.14 16 25 H -0.31 -16.83 7.11 99.48 0.71 -16.12 16 26 H -0.25 -12.67 6.63 99.48 0.66 -12.01 16 27 H 0.04 1.46 7.44 -2.39 -0.02 1.44 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.04 1.57 7.62 -2.39 -0.02 1.55 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.41 8.85 6.71 -92.71 -0.62 8.23 16 35 H 0.16 4.81 7.21 -2.91 -0.02 4.79 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.19 7.15 -2.38 -0.02 1.17 16 42 H 0.03 1.43 7.03 -2.39 -0.02 1.41 16 43 H 0.03 1.77 4.62 -2.39 -0.01 1.75 16 44 H 0.26 16.64 8.31 -92.71 -0.77 15.86 16 Total: -1.00 -84.46 337.06 2.07 -82.39 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.28 Total: 13.92 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.79 Total: 7.50 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -3.80 Total: -119.92 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.87 Total: -36.79 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 1.67 Total: 52.89 kcal Total: -84.46 2.07 -82.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071373893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.818 kcal (2) G-P(sol) polarization free energy of solvation -84.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds