Wall clock time and date at job start Tue Mar 31 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.70189 * 2 1 4 4 C 1.53622 * 109.66053 * 120.58971 * 2 1 3 5 5 C 1.53041 * 109.24380 * 174.54817 * 4 2 1 6 6 C 1.53036 * 109.53554 * 298.51477 * 5 4 2 7 7 H 1.09004 * 109.49681 * 301.40442 * 6 5 4 8 8 N 1.46504 * 109.49756 * 181.31677 * 6 5 4 9 9 C 1.34773 * 120.00320 * 155.15741 * 8 6 5 10 10 O 1.21618 * 119.99803 * 0.02562 * 9 8 6 11 11 C 1.47104 * 120.00069 * 179.97438 * 9 8 6 12 12 C 1.32089 * 118.87446 * 180.02562 * 11 9 8 13 13 C 1.50267 * 122.57464 * 180.37213 * 12 11 9 14 14 O 1.42894 * 110.09394 * 344.35450 * 13 12 11 15 15 C 1.43267 * 113.10000 * 50.53141 * 14 13 12 16 16 C 1.50414 * 118.87630 * 359.73586 * 11 9 8 17 17 C 1.53187 * 109.31796 * 61.36085 * 6 5 4 18 18 N 1.46920 * 109.58556 * 239.63748 * 2 1 3 19 19 C 1.36938 * 120.63045 * 6.63463 * 18 2 1 20 20 H 1.08000 * 120.00136 * 330.81972 * 19 18 2 21 21 C 1.38816 * 119.99764 * 150.82485 * 19 18 2 22 22 N 1.31619 * 120.00364 * 344.72583 * 21 19 18 23 23 Si 1.86802 * 119.99764 * 165.00301 * 21 19 18 24 24 H 1.48503 * 109.47290 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47358 * 119.99854 * 23 21 19 26 26 H 1.48498 * 109.47000 * 240.00065 * 23 21 19 27 27 H 1.08996 * 109.47344 * 180.36267 * 1 2 3 28 28 H 1.09003 * 109.47024 * 300.36262 * 1 2 3 29 29 H 1.09000 * 109.46854 * 60.35811 * 1 2 3 30 30 H 1.09006 * 109.63871 * 54.55345 * 4 2 1 31 31 H 1.09010 * 109.43355 * 294.41512 * 4 2 1 32 32 H 1.08995 * 109.46288 * 178.48919 * 5 4 2 33 33 H 1.08999 * 109.45726 * 58.52974 * 5 4 2 34 34 H 0.97006 * 119.99371 * 335.15428 * 8 6 5 35 35 H 1.07999 * 118.70986 * 0.35156 * 12 11 9 36 36 H 1.08994 * 109.36772 * 104.54608 * 13 12 11 37 37 H 1.09005 * 109.36780 * 224.16511 * 13 12 11 38 38 H 1.08997 * 109.64526 * 50.85188 * 15 14 13 39 39 H 1.08999 * 109.64269 * 171.47226 * 15 14 13 40 40 H 1.08997 * 109.45526 * 283.37331 * 16 11 9 41 41 H 1.09007 * 109.45316 * 43.31123 * 16 11 9 42 42 H 1.08998 * 109.58921 * 185.57581 * 17 6 5 43 43 H 1.09004 * 109.58440 * 65.14998 * 17 6 5 44 44 H 0.96991 * 119.99994 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7362 1.2453 5 6 3.5711 -0.8498 1.1678 6 6 3.9614 -1.6628 -0.0686 7 1 3.5061 -2.6516 -0.0125 8 7 5.4191 -1.7978 -0.1250 9 6 5.9750 -2.8352 -0.7815 10 8 5.2665 -3.6592 -1.3276 11 6 7.4388 -2.9704 -0.8385 12 6 7.9598 -3.9955 -1.4884 13 6 9.4422 -4.2188 -1.5920 14 8 10.1444 -3.0275 -1.2319 15 6 9.7131 -2.4769 0.0184 16 6 8.2910 -1.9329 -0.1603 17 6 3.4657 -0.9422 -1.3262 18 7 2.0225 -0.6997 -1.1943 19 6 1.1537 -1.1128 -2.1689 20 1 0.1365 -1.3694 -1.9121 21 6 1.5804 -1.2018 -3.4868 22 7 2.6999 -0.6171 -3.8571 23 14 0.5618 -2.1451 -4.7366 24 1 -0.6456 -2.7001 -4.0736 25 1 0.1495 -1.2301 -5.8311 26 1 1.3718 -3.2557 -5.2985 27 1 -0.3634 -1.0276 0.0065 28 1 -0.3633 0.5195 0.8867 29 1 -0.3633 0.5083 -0.8932 30 1 1.6095 -1.7337 1.2891 31 1 1.7688 -0.1769 2.1388 32 1 3.9441 -1.3479 2.0626 33 1 4.0065 0.1471 1.0991 34 1 5.9842 -1.1403 0.3103 35 1 7.2944 -4.7010 -1.9636 36 1 9.7338 -5.0269 -0.9213 37 1 9.6959 -4.4923 -2.6162 38 1 9.7191 -3.2540 0.7826 39 1 10.3799 -1.6659 0.3112 40 1 8.3176 -1.0299 -0.7701 41 1 7.8687 -1.6985 0.8169 42 1 3.6533 -1.5639 -2.2016 43 1 3.9878 0.0088 -1.4322 44 1 2.9979 -0.6790 -4.7780 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071457091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:19 Heat of formation + Delta-G solvation = -49.754623 kcal Electronic energy + Delta-G solvation = -24652.218415 eV Core-core repulsion = 21184.167542 eV Total energy + Delta-G solvation = -3468.050872 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.09981 -38.81807 -37.52511 -34.44372 -33.75697 -32.78218 -31.32049 -30.50246 -29.79393 -26.61595 -25.66132 -24.86910 -23.83281 -22.29017 -21.41068 -20.24235 -19.37527 -18.26153 -17.53436 -16.54916 -16.31810 -15.48334 -15.46189 -15.22350 -14.81779 -14.30250 -13.87548 -13.80317 -13.72995 -13.41163 -13.32547 -12.87586 -12.79691 -12.49538 -12.37346 -11.82813 -11.66572 -11.43752 -11.10793 -10.95846 -10.86849 -10.69949 -10.51340 -10.37787 -10.24207 -10.12752 -9.93541 -9.70624 -9.43208 -9.28808 -9.13163 -8.49554 -8.39483 -6.59142 -5.71162 -3.15905 1.43606 3.42060 3.46619 3.51530 3.52793 3.58796 3.76488 4.55048 4.56571 4.66454 4.72827 5.00094 5.09888 5.18519 5.34747 5.37515 5.38867 5.43498 5.48024 5.57735 5.61556 5.70220 5.74750 5.98117 6.11260 6.23614 6.27894 6.31361 6.39976 6.44953 6.48700 6.52203 6.63934 6.76162 6.86553 6.97394 7.05827 7.14167 7.35287 7.78074 7.88252 7.96322 8.52642 8.66073 9.27221 9.91650 10.46644 11.36715 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.004637 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.152156 B = 6037.296492 C = 7277.331020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.715 5.715 9 C 0.545 3.455 10 O -0.534 6.534 11 C -0.159 4.159 12 C -0.125 4.125 13 C 0.087 3.913 14 O -0.378 6.378 15 C 0.061 3.939 16 C -0.120 4.120 17 C 0.168 3.832 18 N -0.584 5.584 19 C -0.252 4.252 20 H 0.071 0.929 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.289 1.289 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.392 0.608 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.016 0.984 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.139 -2.200 11.258 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.100 0.900 8 N -0.365 5.365 9 C 0.332 3.668 10 O -0.412 6.412 11 C -0.162 4.162 12 C -0.145 4.145 13 C 0.011 3.989 14 O -0.297 6.297 15 C -0.016 4.016 16 C -0.158 4.158 17 C 0.041 3.959 18 N -0.307 5.307 19 C -0.382 4.382 20 H 0.089 0.911 21 C -0.193 4.193 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.215 1.215 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.225 0.775 35 H 0.154 0.846 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.034 0.966 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.782 -2.684 10.582 16.062 hybrid contribution -0.425 -0.198 -0.382 0.605 sum 11.357 -2.883 10.200 15.535 Atomic orbital electron populations 1.21797 0.95982 1.01378 1.00216 1.20577 0.93053 0.93486 0.87068 0.95729 1.22120 0.94258 1.01292 0.98907 1.21678 0.97455 0.99626 0.96669 1.21998 0.77754 1.00919 0.98261 0.90047 1.46004 1.08590 1.26803 1.55081 1.18318 0.87741 0.81771 0.78945 1.90824 1.63146 1.42287 1.44922 1.20977 0.93606 0.98556 1.03064 1.23653 0.97781 0.97662 0.95390 1.21568 0.87779 0.87533 1.01999 1.88125 1.60774 1.41796 1.39005 1.22685 0.94593 0.98291 0.86019 1.21122 0.95242 0.98232 1.01158 1.21088 0.83461 0.96872 0.94475 1.44053 1.02606 1.64781 1.19297 1.19192 0.94772 1.38110 0.86121 0.91128 1.25076 0.97736 0.99477 0.97045 1.70004 1.23549 1.44192 1.16720 0.86263 0.79652 0.79624 0.81476 1.20215 1.21790 1.21540 0.92803 0.94351 0.91975 0.92067 0.92723 0.93151 0.92314 0.77466 0.84624 0.91146 0.87125 0.92554 0.88187 0.89124 0.89738 0.88645 0.96591 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.95 37.16 0.30 -2.28 16 2 C 0.16 3.40 3.51 -67.38 -0.24 3.17 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.16 5.40 -26.39 -0.14 -2.30 16 5 C -0.12 -1.89 5.35 -26.69 -0.14 -2.03 16 6 C 0.12 2.30 2.60 -67.81 -0.18 2.12 16 7 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 8 N -0.71 -12.00 5.03 -54.87 -0.28 -12.28 16 9 C 0.55 9.99 7.70 -12.67 -0.10 9.90 16 10 O -0.53 -12.29 15.72 5.26 0.08 -12.21 16 11 C -0.16 -2.25 5.86 -103.09 -0.60 -2.85 16 12 C -0.13 -1.64 9.58 -36.44 -0.35 -1.99 16 13 C 0.09 0.88 7.04 35.80 0.25 1.13 16 14 O -0.38 -4.28 10.83 -35.23 -0.38 -4.67 16 15 C 0.06 0.55 6.89 37.31 0.26 0.80 16 16 C -0.12 -1.25 5.30 -27.86 -0.15 -1.40 16 17 C 0.17 4.15 4.86 -3.71 -0.02 4.13 16 18 N -0.58 -14.74 2.99 -164.52 -0.49 -15.23 16 19 C -0.25 -7.00 8.60 -15.06 -0.13 -7.13 16 20 H 0.07 1.91 6.21 -52.49 -0.33 1.58 16 21 C 0.01 0.16 4.95 -17.43 -0.09 0.07 16 22 N -0.90 -27.11 11.14 55.49 0.62 -26.49 16 23 Si 0.90 22.68 29.58 -169.99 -5.03 17.65 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H 0.05 1.04 7.45 -51.93 -0.39 0.65 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.39 5.17 6.90 -40.82 -0.28 4.89 16 35 H 0.14 1.94 7.29 -52.49 -0.38 1.56 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.71 7.30 -51.93 -0.38 0.33 16 42 H 0.10 2.79 6.06 -51.93 -0.31 2.48 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -33.88 344.58 -8.67 -42.55 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.07 Total: 4.14 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.33 Total: 1.33 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.15 Total: -53.99 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.30 Total: -16.88 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.88 -8.67 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071457091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.202 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds