Wall clock time and date at job start Tue Mar 31 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.70189 * 2 1 4 4 C 1.53622 * 109.66053 * 120.58971 * 2 1 3 5 5 C 1.53041 * 109.24380 * 174.54817 * 4 2 1 6 6 C 1.53036 * 109.53554 * 298.51477 * 5 4 2 7 7 H 1.09004 * 109.49681 * 301.40442 * 6 5 4 8 8 N 1.46504 * 109.49756 * 181.31677 * 6 5 4 9 9 C 1.34773 * 120.00320 * 155.15741 * 8 6 5 10 10 O 1.21618 * 119.99803 * 0.02562 * 9 8 6 11 11 C 1.47104 * 120.00069 * 179.97438 * 9 8 6 12 12 C 1.32089 * 118.87446 * 180.02562 * 11 9 8 13 13 C 1.50267 * 122.57464 * 180.37213 * 12 11 9 14 14 O 1.42894 * 110.09394 * 344.35450 * 13 12 11 15 15 C 1.43267 * 113.10000 * 50.53141 * 14 13 12 16 16 C 1.50414 * 118.87630 * 359.73586 * 11 9 8 17 17 C 1.53187 * 109.31796 * 61.36085 * 6 5 4 18 18 N 1.46920 * 109.58556 * 239.63748 * 2 1 3 19 19 C 1.36938 * 120.63045 * 6.63463 * 18 2 1 20 20 H 1.08000 * 120.00136 * 330.81972 * 19 18 2 21 21 C 1.38816 * 119.99764 * 150.82485 * 19 18 2 22 22 N 1.31619 * 120.00364 * 344.72583 * 21 19 18 23 23 Si 1.86802 * 119.99764 * 165.00301 * 21 19 18 24 24 H 1.48503 * 109.47290 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47358 * 119.99854 * 23 21 19 26 26 H 1.48498 * 109.47000 * 240.00065 * 23 21 19 27 27 H 1.08996 * 109.47344 * 180.36267 * 1 2 3 28 28 H 1.09003 * 109.47024 * 300.36262 * 1 2 3 29 29 H 1.09000 * 109.46854 * 60.35811 * 1 2 3 30 30 H 1.09006 * 109.63871 * 54.55345 * 4 2 1 31 31 H 1.09010 * 109.43355 * 294.41512 * 4 2 1 32 32 H 1.08995 * 109.46288 * 178.48919 * 5 4 2 33 33 H 1.08999 * 109.45726 * 58.52974 * 5 4 2 34 34 H 0.97006 * 119.99371 * 335.15428 * 8 6 5 35 35 H 1.07999 * 118.70986 * 0.35156 * 12 11 9 36 36 H 1.08994 * 109.36772 * 104.54608 * 13 12 11 37 37 H 1.09005 * 109.36780 * 224.16511 * 13 12 11 38 38 H 1.08997 * 109.64526 * 50.85188 * 15 14 13 39 39 H 1.08999 * 109.64269 * 171.47226 * 15 14 13 40 40 H 1.08997 * 109.45526 * 283.37331 * 16 11 9 41 41 H 1.09007 * 109.45316 * 43.31123 * 16 11 9 42 42 H 1.08998 * 109.58921 * 185.57581 * 17 6 5 43 43 H 1.09004 * 109.58440 * 65.14998 * 17 6 5 44 44 H 0.96991 * 119.99994 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7362 1.2453 5 6 3.5711 -0.8498 1.1678 6 6 3.9614 -1.6628 -0.0686 7 1 3.5061 -2.6516 -0.0125 8 7 5.4191 -1.7978 -0.1250 9 6 5.9750 -2.8352 -0.7815 10 8 5.2665 -3.6592 -1.3276 11 6 7.4388 -2.9704 -0.8385 12 6 7.9598 -3.9955 -1.4884 13 6 9.4422 -4.2188 -1.5920 14 8 10.1444 -3.0275 -1.2319 15 6 9.7131 -2.4769 0.0184 16 6 8.2910 -1.9329 -0.1603 17 6 3.4657 -0.9422 -1.3262 18 7 2.0225 -0.6997 -1.1943 19 6 1.1537 -1.1128 -2.1689 20 1 0.1365 -1.3694 -1.9121 21 6 1.5804 -1.2018 -3.4868 22 7 2.6999 -0.6171 -3.8571 23 14 0.5618 -2.1451 -4.7366 24 1 -0.6456 -2.7001 -4.0736 25 1 0.1495 -1.2301 -5.8311 26 1 1.3718 -3.2557 -5.2985 27 1 -0.3634 -1.0276 0.0065 28 1 -0.3633 0.5195 0.8867 29 1 -0.3633 0.5083 -0.8932 30 1 1.6095 -1.7337 1.2891 31 1 1.7688 -0.1769 2.1388 32 1 3.9441 -1.3479 2.0626 33 1 4.0065 0.1471 1.0991 34 1 5.9842 -1.1403 0.3103 35 1 7.2944 -4.7010 -1.9636 36 1 9.7338 -5.0269 -0.9213 37 1 9.6959 -4.4923 -2.6162 38 1 9.7191 -3.2540 0.7826 39 1 10.3799 -1.6659 0.3112 40 1 8.3176 -1.0299 -0.7701 41 1 7.8687 -1.6985 0.8169 42 1 3.6533 -1.5639 -2.2016 43 1 3.9878 0.0088 -1.4322 44 1 2.9979 -0.6790 -4.7780 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071457091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:18 Heat of formation + Delta-G solvation = -74.014140 kcal Electronic energy + Delta-G solvation = -24653.270386 eV Core-core repulsion = 21184.167542 eV Total energy + Delta-G solvation = -3469.102844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36768 -39.98496 -39.10087 -36.09623 -34.87240 -34.60841 -32.39505 -31.87074 -31.63673 -28.00875 -27.27588 -26.39020 -24.71890 -24.04424 -22.76156 -21.81945 -21.07004 -19.43433 -18.59734 -18.36939 -17.54201 -17.11259 -16.77703 -16.23489 -16.17867 -15.84601 -15.55669 -15.38743 -15.04514 -14.88920 -14.54424 -14.45163 -14.14530 -13.67477 -13.58170 -13.36865 -13.09675 -12.78863 -12.74056 -12.57980 -12.50810 -12.29372 -12.13639 -12.01420 -11.82980 -11.66709 -11.44194 -11.18543 -11.10237 -10.57475 -10.55768 -10.25260 -10.00866 -8.65372 -7.87546 -5.33946 0.28071 1.37881 1.42115 1.50373 2.09793 2.27578 2.48445 2.94753 3.28783 3.54426 3.68386 3.74151 3.86273 3.94926 4.07242 4.22614 4.29819 4.32464 4.36954 4.44085 4.52611 4.59588 4.68684 4.69753 4.78454 4.82312 4.87732 4.98007 4.99365 5.04896 5.16614 5.23136 5.27963 5.30551 5.42973 5.51256 5.53600 5.59974 5.68167 5.77978 6.11455 6.38750 6.59306 7.12946 7.26955 7.87760 8.36655 9.17442 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.004637 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.152156 B = 6037.296492 C = 7277.331020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.130 3.870 7 H 0.049 0.951 8 N -0.701 5.701 9 C 0.536 3.464 10 O -0.594 6.594 11 C -0.176 4.176 12 C -0.117 4.117 13 C 0.091 3.909 14 O -0.395 6.395 15 C 0.060 3.940 16 C -0.116 4.116 17 C 0.180 3.820 18 N -0.604 5.604 19 C -0.250 4.250 20 H 0.076 0.924 21 C -0.056 4.056 22 N -0.935 5.935 23 Si 0.957 3.043 24 H -0.261 1.261 25 H -0.287 1.287 26 H -0.302 1.302 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.413 0.587 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.041 0.959 43 H -0.003 1.003 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.166 -1.739 14.272 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.024 3.976 7 H 0.067 0.933 8 N -0.352 5.352 9 C 0.326 3.674 10 O -0.476 6.476 11 C -0.179 4.179 12 C -0.138 4.138 13 C 0.015 3.985 14 O -0.314 6.314 15 C -0.016 4.016 16 C -0.153 4.153 17 C 0.052 3.948 18 N -0.328 5.328 19 C -0.380 4.380 20 H 0.094 0.906 21 C -0.251 4.251 22 N -0.582 5.582 23 Si 0.786 3.214 24 H -0.185 1.185 25 H -0.214 1.214 26 H -0.229 1.229 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.815 -2.183 13.661 18.857 hybrid contribution -0.761 -0.343 -1.296 1.541 sum 12.054 -2.527 12.365 17.452 Atomic orbital electron populations 1.21732 0.94697 1.01138 1.01114 1.20915 0.94325 0.93358 0.86665 0.95921 1.22027 0.94495 1.00820 0.98365 1.21651 0.97181 0.99993 0.95659 1.21539 0.79194 0.99079 0.97834 0.93283 1.45812 1.07675 1.27023 1.54684 1.19141 0.89604 0.81035 0.77658 1.90789 1.64972 1.44478 1.47383 1.21016 0.91231 1.00583 1.05089 1.23923 0.99747 0.96491 0.93603 1.21714 0.85017 0.88129 1.03627 1.88112 1.60820 1.42190 1.40283 1.22902 0.93735 0.99512 0.85498 1.21201 0.95751 0.96671 1.01680 1.20759 0.83805 0.95188 0.95008 1.44356 1.02436 1.65712 1.20300 1.19546 0.95254 1.36472 0.86722 0.90600 1.25815 0.99068 1.01128 0.99054 1.70169 1.25389 1.46274 1.16364 0.85351 0.78623 0.77993 0.79481 1.18499 1.21404 1.22948 0.93592 0.90143 0.94334 0.92983 0.88416 0.89483 0.90730 0.74988 0.86839 0.88311 0.85759 0.90936 0.85694 0.89534 0.87448 0.94073 0.98527 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.95 71.98 0.57 -4.11 16 2 C 0.15 6.11 3.51 45.12 0.16 6.27 16 3 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.12 -3.66 5.40 30.82 0.17 -3.50 16 5 C -0.11 -3.16 5.35 30.62 0.16 -3.00 16 6 C 0.13 5.19 2.60 45.07 0.12 5.31 16 7 H 0.05 2.30 7.58 -2.38 -0.02 2.28 16 8 N -0.70 -23.52 5.03 -445.76 -2.24 -25.76 16 9 C 0.54 20.33 7.70 86.57 0.67 21.00 16 10 O -0.59 -29.25 15.72 -4.09 -0.06 -29.31 16 11 C -0.18 -4.94 5.86 -18.59 -0.11 -5.05 16 12 C -0.12 -3.08 9.58 24.59 0.24 -2.85 16 13 C 0.09 1.65 7.04 71.10 0.50 2.15 16 14 O -0.40 -7.93 10.83 -148.98 -1.61 -9.55 16 15 C 0.06 0.87 6.89 72.08 0.50 1.37 16 16 C -0.12 -2.15 5.30 29.86 0.16 -2.00 16 17 C 0.18 9.25 4.86 86.36 0.42 9.67 16 18 N -0.60 -31.18 2.99 -674.43 -2.01 -33.19 16 19 C -0.25 -14.25 8.60 84.03 0.72 -13.52 16 20 H 0.08 4.16 6.21 -2.91 -0.02 4.15 16 21 C -0.06 -3.34 4.95 84.86 0.42 -2.92 16 22 N -0.94 -59.43 11.14 21.65 0.24 -59.19 16 23 Si 0.96 48.45 29.58 68.60 2.03 50.48 16 24 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.30 -15.79 7.11 99.48 0.71 -15.08 16 27 H 0.04 1.71 7.45 -2.39 -0.02 1.69 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.04 1.54 7.62 -2.39 -0.02 1.53 16 30 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.41 10.20 6.90 -92.70 -0.64 9.56 16 35 H 0.11 3.46 7.29 -2.91 -0.02 3.44 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 39 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.11 1.46 7.30 -2.38 -0.02 1.44 16 42 H 0.04 2.57 6.06 -2.39 -0.01 2.55 16 43 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 44 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -80.48 344.58 1.38 -79.10 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.35 Total: 18.58 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.69 Total: 8.83 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.01 Total: -118.14 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.68 Total: -38.86 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -80.48 1.38 -79.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071457091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.089 kcal (2) G-P(sol) polarization free energy of solvation -80.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds