Wall clock time and date at job start Tue Mar 31 2020 06:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.69889 * 2 1 4 4 C 1.53198 * 109.58567 * 120.34788 * 2 1 3 5 5 C 1.53038 * 109.30949 * 174.42765 * 4 2 1 6 6 C 1.53043 * 109.53854 * 298.63090 * 5 4 2 7 7 H 1.09000 * 109.50042 * 181.35147 * 6 5 4 8 8 N 1.46491 * 109.50119 * 301.41881 * 6 5 4 9 9 C 1.34780 * 120.00484 * 204.99654 * 8 6 5 10 10 O 1.21610 * 119.99593 * 0.27303 * 9 8 6 11 11 C 1.47100 * 120.00132 * 179.97438 * 9 8 6 12 12 C 1.32093 * 118.87441 * 180.02562 * 11 9 8 13 13 C 1.50262 * 122.57783 * 180.36980 * 12 11 9 14 14 O 1.42891 * 110.09320 * 344.35642 * 13 12 11 15 15 C 1.43274 * 113.10337 * 50.53043 * 14 13 12 16 16 C 1.50414 * 118.87995 * 359.73545 * 11 9 8 17 17 C 1.53200 * 109.30818 * 61.36738 * 6 5 4 18 18 N 1.46919 * 108.77684 * 305.36557 * 17 6 5 19 19 C 1.36934 * 120.62886 * 233.60912 * 18 17 6 20 20 H 1.08000 * 120.00032 * 150.16656 * 19 18 17 21 21 C 1.38808 * 120.00012 * 330.16021 * 19 18 17 22 22 N 1.31616 * 120.00399 * 344.50004 * 21 19 18 23 23 Si 1.86805 * 119.99980 * 164.49198 * 21 19 18 24 24 H 1.48505 * 109.46890 * 90.00461 * 23 21 19 25 25 H 1.48501 * 109.47475 * 210.00319 * 23 21 19 26 26 H 1.48498 * 109.47228 * 330.00871 * 23 21 19 27 27 H 1.08999 * 109.47590 * 299.64517 * 1 2 3 28 28 H 1.08996 * 109.46919 * 59.65173 * 1 2 3 29 29 H 1.09006 * 109.46764 * 179.64975 * 1 2 3 30 30 H 1.08993 * 109.49660 * 54.47566 * 4 2 1 31 31 H 1.09001 * 109.49485 * 294.37566 * 4 2 1 32 32 H 1.09003 * 109.45964 * 178.61543 * 5 4 2 33 33 H 1.08996 * 109.45229 * 58.65009 * 5 4 2 34 34 H 0.97006 * 119.99817 * 24.99944 * 8 6 5 35 35 H 1.08001 * 118.71098 * 0.34992 * 12 11 9 36 36 H 1.09007 * 109.36629 * 104.54503 * 13 12 11 37 37 H 1.08999 * 109.36871 * 224.28859 * 13 12 11 38 38 H 1.08999 * 109.64039 * 50.84671 * 15 14 13 39 39 H 1.08994 * 109.64134 * 171.47574 * 15 14 13 40 40 H 1.09004 * 109.45343 * 283.37894 * 16 11 9 41 41 H 1.09004 * 109.45316 * 43.31039 * 16 11 9 42 42 H 1.09006 * 109.58299 * 65.15752 * 17 6 5 43 43 H 1.09003 * 109.58566 * 185.57320 * 17 6 5 44 44 H 0.96998 * 120.00687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7292 1.2456 5 6 3.5675 -0.8477 1.1703 6 6 3.9570 -1.6656 -0.0632 7 1 5.0413 -1.7699 -0.1031 8 7 3.3407 -2.9923 0.0152 9 6 3.8973 -4.0334 -0.6351 10 8 4.9139 -3.8725 -1.2828 11 6 3.2787 -5.3657 -0.5559 12 6 3.8431 -6.3704 -1.2015 13 6 3.2779 -7.7626 -1.1845 14 8 2.3256 -7.8929 -0.1272 15 6 1.3407 -6.8524 -0.1263 16 6 2.0288 -5.5388 0.2627 17 6 3.4651 -0.9470 -1.3236 18 7 2.0226 -0.6996 -1.1943 19 6 1.1538 -1.1133 -2.1686 20 1 0.1399 -1.3805 -1.9099 21 6 1.5763 -1.1892 -3.4886 22 7 2.6869 -0.5883 -3.8598 23 14 0.5687 -2.1444 -4.7384 24 1 -0.4253 -1.2389 -5.3689 25 1 1.4689 -2.6954 -5.7831 26 1 -0.1387 -3.2580 -4.0568 27 1 -0.3634 0.5083 0.8931 28 1 -0.3633 0.5192 -0.8868 29 1 -0.3633 -1.0277 -0.0063 30 1 1.6030 -1.7251 1.2915 31 1 1.7659 -0.1666 2.1369 32 1 3.9378 -1.3445 2.0671 33 1 4.0059 0.1477 1.0993 34 1 2.5320 -3.1214 0.5350 35 1 4.7461 -6.1839 -1.7639 36 1 2.7899 -7.9663 -2.1377 37 1 4.0853 -8.4787 -1.0315 38 1 0.9033 -6.7611 -1.1205 39 1 0.5621 -7.0855 0.5999 40 1 2.2882 -5.5600 1.3213 41 1 1.3516 -4.7063 0.0719 42 1 3.9904 0.0020 -1.4316 43 1 3.6519 -1.5718 -2.1969 44 1 2.9824 -0.6415 -4.7821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071457093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:24 Heat of formation + Delta-G solvation = -48.660160 kcal Electronic energy + Delta-G solvation = -25485.316804 eV Core-core repulsion = 22017.313391 eV Total energy + Delta-G solvation = -3468.003413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00357 -38.81167 -37.48005 -34.15073 -33.61757 -32.73315 -31.21223 -30.42827 -29.87285 -26.52825 -25.75861 -24.92070 -23.74911 -22.18877 -21.55677 -20.41286 -18.73741 -18.36149 -17.48239 -16.42163 -16.18461 -15.44156 -15.21420 -15.16073 -14.71390 -14.31208 -13.93983 -13.85935 -13.53368 -13.40342 -13.18098 -12.82580 -12.76532 -12.45330 -12.37080 -11.88556 -11.53239 -11.21089 -11.17078 -10.97161 -10.88510 -10.80069 -10.70617 -10.39975 -10.34218 -10.00356 -9.96706 -9.54222 -9.46084 -9.21456 -8.99169 -8.45014 -8.32275 -6.58820 -5.75004 -3.19372 1.58534 3.36428 3.43082 3.45086 3.61037 3.78208 3.91711 4.49538 4.73201 4.83876 4.88314 5.18196 5.24338 5.30624 5.33068 5.35636 5.43382 5.50535 5.56692 5.59486 5.64842 5.74090 5.85651 6.00736 6.10737 6.14835 6.32223 6.33834 6.38338 6.43937 6.51311 6.59170 6.62989 6.70458 6.91468 6.99159 7.04342 7.12283 7.40273 7.69561 7.83390 8.14017 8.49442 8.81693 9.23562 9.88287 10.44971 11.32996 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.006690 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.407347 B = 4184.577800 C = 5052.567949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.117 3.883 7 H 0.075 0.925 8 N -0.693 5.693 9 C 0.549 3.451 10 O -0.550 6.550 11 C -0.152 4.152 12 C -0.131 4.131 13 C 0.088 3.912 14 O -0.381 6.381 15 C 0.060 3.940 16 C -0.120 4.120 17 C 0.163 3.837 18 N -0.582 5.582 19 C -0.251 4.251 20 H 0.067 0.933 21 C 0.007 3.993 22 N -0.898 5.898 23 Si 0.895 3.105 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.395 0.605 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.025 0.975 43 H 0.095 0.905 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 -8.716 10.457 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.011 3.989 7 H 0.093 0.907 8 N -0.343 5.343 9 C 0.336 3.664 10 O -0.430 6.430 11 C -0.155 4.155 12 C -0.150 4.150 13 C 0.012 3.988 14 O -0.300 6.300 15 C -0.017 4.017 16 C -0.158 4.158 17 C 0.036 3.964 18 N -0.305 5.305 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.193 4.193 22 N -0.542 5.542 23 Si 0.725 3.275 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.230 0.770 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.043 0.957 43 H 0.113 0.887 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.690 -8.689 9.966 13.240 hybrid contribution -0.809 -0.122 -0.797 1.142 sum -1.499 -8.811 9.169 12.805 Atomic orbital electron populations 1.21788 0.96117 1.01202 1.00141 1.20471 0.92876 0.93659 0.87210 0.95767 1.22066 0.95164 1.00593 0.99125 1.21691 0.97010 1.00168 0.96807 1.21790 0.96972 0.81882 0.98226 0.90695 1.45770 1.29208 1.08546 1.50785 1.18230 0.84199 0.84528 0.79440 1.90750 1.25288 1.85188 1.41736 1.20970 0.98519 0.93974 1.02072 1.23592 0.99871 0.94482 0.97095 1.21547 0.92080 0.94038 0.91159 1.88087 1.41500 1.48833 1.51548 1.22697 0.90555 0.86471 1.01927 1.21115 0.95257 0.99525 0.99867 1.21162 0.83791 0.96992 0.94434 1.44023 1.02663 1.64779 1.19041 1.19037 0.94968 1.38032 0.86006 0.91552 1.25068 0.97731 0.99456 0.97005 1.69983 1.23899 1.43588 1.16685 0.86426 0.79414 0.80048 0.81626 1.21472 1.21661 1.20630 0.94435 0.92072 0.92986 0.92795 0.92845 0.93057 0.91095 0.76957 0.84790 0.91152 0.87379 0.92267 0.88227 0.89672 0.89117 0.95703 0.88725 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.95 37.16 0.30 -2.10 16 2 C 0.16 3.20 3.50 -67.60 -0.24 2.96 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.04 5.21 -26.61 -0.14 -2.18 16 5 C -0.12 -1.88 5.59 -26.69 -0.15 -2.02 16 6 C 0.12 2.26 2.81 -67.81 -0.19 2.06 16 7 H 0.08 1.50 7.57 -51.93 -0.39 1.10 16 8 N -0.69 -12.58 4.86 -54.87 -0.27 -12.84 16 9 C 0.55 10.72 7.70 -12.66 -0.10 10.62 16 10 O -0.55 -12.71 15.72 5.27 0.08 -12.62 16 11 C -0.15 -2.44 5.86 -103.09 -0.60 -3.04 16 12 C -0.13 -1.91 9.58 -36.44 -0.35 -2.26 16 13 C 0.09 1.02 7.04 35.79 0.25 1.27 16 14 O -0.38 -4.83 10.83 -35.23 -0.38 -5.21 16 15 C 0.06 0.69 6.89 37.31 0.26 0.95 16 16 C -0.12 -1.54 5.30 -27.86 -0.15 -1.68 16 17 C 0.16 3.89 4.88 -3.71 -0.02 3.87 16 18 N -0.58 -13.67 2.90 -164.77 -0.48 -14.15 16 19 C -0.25 -6.54 8.58 -15.06 -0.13 -6.66 16 20 H 0.07 1.68 6.23 -52.49 -0.33 1.36 16 21 C 0.01 0.18 4.94 -17.43 -0.09 0.10 16 22 N -0.90 -26.37 11.23 55.49 0.62 -25.74 16 23 Si 0.89 21.86 29.58 -169.99 -5.03 16.84 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 29 H 0.05 0.92 7.40 -51.93 -0.38 0.53 16 30 H 0.05 0.83 6.40 -51.93 -0.33 0.49 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.39 6.36 5.07 -40.82 -0.21 6.15 16 35 H 0.13 2.07 7.29 -52.49 -0.38 1.68 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.18 7.30 -51.93 -0.38 0.80 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 2.68 6.15 -51.93 -0.32 2.36 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -31.78 341.16 -8.55 -40.34 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.91 Total: 6.39 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.34 Total: 1.88 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.12 Total: -52.74 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.30 Total: -17.84 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.78 -8.55 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071457093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.323 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds