Wall clock time and date at job start Tue Mar 31 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.69889 * 2 1 4 4 C 1.53198 * 109.58567 * 120.34788 * 2 1 3 5 5 C 1.53038 * 109.30949 * 174.42765 * 4 2 1 6 6 C 1.53043 * 109.53854 * 298.63090 * 5 4 2 7 7 H 1.09000 * 109.50042 * 181.35147 * 6 5 4 8 8 N 1.46491 * 109.50119 * 301.41881 * 6 5 4 9 9 C 1.34780 * 120.00484 * 204.99654 * 8 6 5 10 10 O 1.21610 * 119.99593 * 0.27303 * 9 8 6 11 11 C 1.47100 * 120.00132 * 179.97438 * 9 8 6 12 12 C 1.32093 * 118.87441 * 180.02562 * 11 9 8 13 13 C 1.50262 * 122.57783 * 180.36980 * 12 11 9 14 14 O 1.42891 * 110.09320 * 344.35642 * 13 12 11 15 15 C 1.43274 * 113.10337 * 50.53043 * 14 13 12 16 16 C 1.50414 * 118.87995 * 359.73545 * 11 9 8 17 17 C 1.53200 * 109.30818 * 61.36738 * 6 5 4 18 18 N 1.46919 * 108.77684 * 305.36557 * 17 6 5 19 19 C 1.36934 * 120.62886 * 233.60912 * 18 17 6 20 20 H 1.08000 * 120.00032 * 150.16656 * 19 18 17 21 21 C 1.38808 * 120.00012 * 330.16021 * 19 18 17 22 22 N 1.31616 * 120.00399 * 344.50004 * 21 19 18 23 23 Si 1.86805 * 119.99980 * 164.49198 * 21 19 18 24 24 H 1.48505 * 109.46890 * 90.00461 * 23 21 19 25 25 H 1.48501 * 109.47475 * 210.00319 * 23 21 19 26 26 H 1.48498 * 109.47228 * 330.00871 * 23 21 19 27 27 H 1.08999 * 109.47590 * 299.64517 * 1 2 3 28 28 H 1.08996 * 109.46919 * 59.65173 * 1 2 3 29 29 H 1.09006 * 109.46764 * 179.64975 * 1 2 3 30 30 H 1.08993 * 109.49660 * 54.47566 * 4 2 1 31 31 H 1.09001 * 109.49485 * 294.37566 * 4 2 1 32 32 H 1.09003 * 109.45964 * 178.61543 * 5 4 2 33 33 H 1.08996 * 109.45229 * 58.65009 * 5 4 2 34 34 H 0.97006 * 119.99817 * 24.99944 * 8 6 5 35 35 H 1.08001 * 118.71098 * 0.34992 * 12 11 9 36 36 H 1.09007 * 109.36629 * 104.54503 * 13 12 11 37 37 H 1.08999 * 109.36871 * 224.28859 * 13 12 11 38 38 H 1.08999 * 109.64039 * 50.84671 * 15 14 13 39 39 H 1.08994 * 109.64134 * 171.47574 * 15 14 13 40 40 H 1.09004 * 109.45343 * 283.37894 * 16 11 9 41 41 H 1.09004 * 109.45316 * 43.31039 * 16 11 9 42 42 H 1.09006 * 109.58299 * 65.15752 * 17 6 5 43 43 H 1.09003 * 109.58566 * 185.57320 * 17 6 5 44 44 H 0.96998 * 120.00687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7292 1.2456 5 6 3.5675 -0.8477 1.1703 6 6 3.9570 -1.6656 -0.0632 7 1 5.0413 -1.7699 -0.1031 8 7 3.3407 -2.9923 0.0152 9 6 3.8973 -4.0334 -0.6351 10 8 4.9139 -3.8725 -1.2828 11 6 3.2787 -5.3657 -0.5559 12 6 3.8431 -6.3704 -1.2015 13 6 3.2779 -7.7626 -1.1845 14 8 2.3256 -7.8929 -0.1272 15 6 1.3407 -6.8524 -0.1263 16 6 2.0288 -5.5388 0.2627 17 6 3.4651 -0.9470 -1.3236 18 7 2.0226 -0.6996 -1.1943 19 6 1.1538 -1.1133 -2.1686 20 1 0.1399 -1.3805 -1.9099 21 6 1.5763 -1.1892 -3.4886 22 7 2.6869 -0.5883 -3.8598 23 14 0.5687 -2.1444 -4.7384 24 1 -0.4253 -1.2389 -5.3689 25 1 1.4689 -2.6954 -5.7831 26 1 -0.1387 -3.2580 -4.0568 27 1 -0.3634 0.5083 0.8931 28 1 -0.3633 0.5192 -0.8868 29 1 -0.3633 -1.0277 -0.0063 30 1 1.6030 -1.7251 1.2915 31 1 1.7659 -0.1666 2.1369 32 1 3.9378 -1.3445 2.0671 33 1 4.0059 0.1477 1.0993 34 1 2.5320 -3.1214 0.5350 35 1 4.7461 -6.1839 -1.7639 36 1 2.7899 -7.9663 -2.1377 37 1 4.0853 -8.4787 -1.0315 38 1 0.9033 -6.7611 -1.1205 39 1 0.5621 -7.0855 0.5999 40 1 2.2882 -5.5600 1.3213 41 1 1.3516 -4.7063 0.0719 42 1 3.9904 0.0020 -1.4316 43 1 3.6519 -1.5718 -2.1969 44 1 2.9824 -0.6415 -4.7821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071457093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:23 Heat of formation + Delta-G solvation = -70.293396 kcal Electronic energy + Delta-G solvation = -25486.254891 eV Core-core repulsion = 22017.313391 eV Total energy + Delta-G solvation = -3468.941501 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37072 -40.03841 -39.01552 -35.83632 -34.81650 -34.48106 -32.37991 -31.81860 -31.64287 -28.00216 -27.20897 -26.52388 -24.76264 -23.91304 -22.88635 -22.01941 -20.38649 -19.62294 -18.62659 -18.22612 -17.34928 -17.09597 -16.62651 -16.32542 -16.09270 -15.87657 -15.55464 -15.42032 -14.92509 -14.70402 -14.62093 -14.35751 -14.03057 -13.81389 -13.53237 -13.40793 -12.97813 -12.90007 -12.64045 -12.52664 -12.49402 -12.43631 -12.13490 -12.08783 -11.81464 -11.58736 -11.24912 -11.15427 -11.04922 -10.57911 -10.49833 -10.20100 -9.88687 -8.57121 -7.82552 -5.28085 0.33036 1.39479 1.41820 1.49196 2.21377 2.39937 2.49863 2.93235 3.33566 3.62226 3.65121 3.72243 3.87283 4.01237 4.09024 4.17168 4.28353 4.31449 4.45079 4.48196 4.54920 4.64400 4.69093 4.74499 4.80835 4.82000 4.94331 4.95666 5.03626 5.08595 5.10851 5.24253 5.26842 5.31212 5.49949 5.57521 5.61033 5.68626 5.72996 5.74400 6.07732 6.43857 6.67799 7.18075 7.33790 7.92563 8.44177 9.22853 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.006690 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.407347 B = 4184.577800 C = 5052.567949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.012 0.988 4 C -0.118 4.118 5 C -0.111 4.111 6 C 0.126 3.874 7 H 0.061 0.939 8 N -0.683 5.683 9 C 0.538 3.462 10 O -0.599 6.599 11 C -0.176 4.176 12 C -0.121 4.121 13 C 0.090 3.910 14 O -0.388 6.388 15 C 0.059 3.941 16 C -0.114 4.114 17 C 0.173 3.827 18 N -0.593 5.593 19 C -0.235 4.235 20 H 0.079 0.921 21 C -0.057 4.057 22 N -0.938 5.938 23 Si 0.949 3.051 24 H -0.284 1.284 25 H -0.307 1.307 26 H -0.263 1.263 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.408 0.592 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.056 0.944 39 H 0.129 0.871 40 H 0.102 0.898 41 H 0.088 0.912 42 H -0.005 1.005 43 H 0.044 0.956 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -10.329 13.466 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.030 0.970 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.019 3.981 7 H 0.079 0.921 8 N -0.333 5.333 9 C 0.327 3.673 10 O -0.483 6.483 11 C -0.179 4.179 12 C -0.141 4.141 13 C 0.014 3.986 14 O -0.307 6.307 15 C -0.017 4.017 16 C -0.151 4.151 17 C 0.046 3.954 18 N -0.316 5.316 19 C -0.365 4.365 20 H 0.096 0.904 21 C -0.252 4.252 22 N -0.585 5.585 23 Si 0.779 3.221 24 H -0.211 1.211 25 H -0.235 1.235 26 H -0.188 1.188 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.246 0.754 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.152 0.848 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.013 0.987 43 H 0.062 0.938 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.965 -10.305 13.041 16.884 hybrid contribution -0.082 0.432 -1.719 1.774 sum -3.047 -9.874 11.322 15.329 Atomic orbital electron populations 1.21717 0.94477 1.01491 1.00807 1.20796 0.94331 0.93156 0.87020 0.96996 1.21959 0.94471 1.01125 0.98175 1.21667 0.97543 0.99813 0.95827 1.21504 0.96172 0.82614 0.97799 0.92096 1.45660 1.29456 1.07732 1.50426 1.18966 0.83709 0.86164 0.78456 1.90719 1.27581 1.86157 1.43805 1.21058 1.00438 0.92108 1.04330 1.23878 0.98853 0.96144 0.95246 1.21722 0.92801 0.92209 0.91837 1.88086 1.41688 1.49083 1.51796 1.22845 0.90690 0.85456 1.02707 1.21143 0.93462 1.00314 1.00156 1.20812 0.84436 0.95102 0.95036 1.44230 1.02034 1.65452 1.19930 1.19412 0.95394 1.35509 0.86231 0.90376 1.25791 0.98976 1.01319 0.99120 1.70171 1.26082 1.46169 1.16107 0.85533 0.77902 0.79328 0.79372 1.21092 1.23472 1.18762 0.90561 0.94729 0.92732 0.91751 0.89011 0.89675 0.90919 0.75437 0.86523 0.89606 0.84785 0.92598 0.85307 0.87966 0.89366 0.98721 0.93753 0.94972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.95 71.98 0.57 -3.59 16 2 C 0.15 5.64 3.50 44.98 0.16 5.80 16 3 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 4 C -0.12 -3.25 5.21 30.67 0.16 -3.09 16 5 C -0.11 -3.21 5.59 30.62 0.17 -3.04 16 6 C 0.13 4.87 2.81 45.07 0.13 5.00 16 7 H 0.06 2.53 7.57 -2.39 -0.02 2.51 16 8 N -0.68 -24.41 4.86 -445.77 -2.17 -26.58 16 9 C 0.54 21.37 7.70 86.57 0.67 22.04 16 10 O -0.60 -29.19 15.72 -4.06 -0.06 -29.25 16 11 C -0.18 -5.51 5.86 -18.59 -0.11 -5.62 16 12 C -0.12 -3.46 9.58 24.58 0.24 -3.23 16 13 C 0.09 1.86 7.04 71.10 0.50 2.36 16 14 O -0.39 -8.58 10.83 -148.98 -1.61 -10.19 16 15 C 0.06 1.17 6.89 72.08 0.50 1.66 16 16 C -0.11 -2.60 5.30 29.86 0.16 -2.44 16 17 C 0.17 8.66 4.88 86.37 0.42 9.08 16 18 N -0.59 -28.07 2.90 -675.22 -1.96 -30.03 16 19 C -0.23 -12.32 8.58 84.03 0.72 -11.60 16 20 H 0.08 3.87 6.23 -2.91 -0.02 3.86 16 21 C -0.06 -3.27 4.94 84.86 0.42 -2.85 16 22 N -0.94 -58.25 11.23 21.65 0.24 -58.01 16 23 Si 0.95 45.99 29.58 68.60 2.03 48.02 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 26 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.03 1.29 7.67 -2.39 -0.02 1.27 16 29 H 0.05 1.74 7.40 -2.38 -0.02 1.73 16 30 H 0.06 1.67 6.40 -2.39 -0.02 1.65 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.41 12.24 5.07 -92.70 -0.47 11.77 16 35 H 0.12 3.71 7.29 -2.91 -0.02 3.69 16 36 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.13 2.08 8.14 -2.39 -0.02 2.07 16 38 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 39 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 2.05 7.30 -2.39 -0.02 2.03 16 42 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 43 H 0.04 2.67 6.15 -2.39 -0.01 2.66 16 44 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -74.23 341.16 1.69 -72.54 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.53 Total: 23.02 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 4.70 Total: 10.48 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -3.88 Total: -114.62 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.68 Total: -39.44 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.23 1.69 -72.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071457093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.242 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds