Wall clock time and date at job start Tue Mar 31 2020 06:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.58184 * 2 1 4 4 C 1.53186 * 109.59143 * 239.70761 * 2 1 3 5 5 C 1.53033 * 109.31646 * 185.57783 * 4 2 1 6 6 C 1.53038 * 109.54018 * 61.36569 * 5 4 2 7 7 H 1.09003 * 109.49894 * 178.64836 * 6 5 4 8 8 N 1.46497 * 109.49356 * 58.58706 * 6 5 4 9 9 C 1.34776 * 120.00184 * 155.00316 * 8 6 5 10 10 O 1.21286 * 119.99731 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00415 * 180.02562 * 9 8 6 12 12 H 1.09001 * 115.48061 * 34.67173 * 11 9 8 13 13 C 1.53002 * 117.43479 * 179.97438 * 11 9 8 14 14 H 1.09009 * 119.80561 * 355.36248 * 13 11 9 15 15 C 1.54476 * 118.06637 * 199.10381 * 13 11 9 16 16 O 1.44418 * 104.80265 * 319.85803 * 15 13 11 17 17 C 1.44428 * 105.27725 * 319.49150 * 16 15 13 18 18 C 1.54475 * 104.80213 * 40.51147 * 17 16 15 19 19 H 1.09005 * 117.48968 * 197.22195 * 18 17 16 20 20 C 1.53191 * 109.31403 * 298.63894 * 6 5 4 21 21 N 1.46926 * 108.77695 * 54.62806 * 20 6 5 22 22 C 1.36935 * 120.62783 * 126.41329 * 21 20 6 23 23 H 1.08004 * 120.00140 * 208.99947 * 22 21 20 24 24 C 1.38807 * 120.00166 * 28.99887 * 22 21 20 25 25 N 1.31624 * 119.99866 * 15.03578 * 24 22 21 26 26 Si 1.86800 * 120.00100 * 195.03352 * 24 22 21 27 27 H 1.48494 * 109.47286 * 0.02562 * 26 24 22 28 28 H 1.48509 * 109.46995 * 120.00192 * 26 24 22 29 29 H 1.48502 * 109.47270 * 239.99780 * 26 24 22 30 30 H 1.08996 * 109.46776 * 180.29069 * 1 2 3 31 31 H 1.09000 * 109.47083 * 300.28611 * 1 2 3 32 32 H 1.08994 * 109.46886 * 60.28918 * 1 2 3 33 33 H 1.09006 * 109.49565 * 65.62321 * 4 2 1 34 34 H 1.08997 * 109.52440 * 305.55297 * 4 2 1 35 35 H 1.09003 * 109.45939 * 301.34608 * 5 4 2 36 36 H 1.08998 * 109.45269 * 181.38631 * 5 4 2 37 37 H 0.97006 * 120.00761 * 334.99855 * 8 6 5 38 38 H 1.08997 * 110.37031 * 78.69257 * 15 13 11 39 39 H 1.09004 * 110.36873 * 201.03357 * 15 13 11 40 40 H 1.09000 * 110.37508 * 159.34196 * 17 16 15 41 41 H 1.09000 * 110.37133 * 281.56845 * 17 16 15 42 42 H 1.08999 * 109.58612 * 174.41716 * 20 6 5 43 43 H 1.09003 * 109.58547 * 294.84403 * 20 6 5 44 44 H 0.96999 * 119.99765 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7280 -1.2461 5 6 3.5675 -0.8466 -1.1710 6 6 3.9570 -1.6657 0.0617 7 1 5.0413 -1.7701 0.1015 8 7 3.3406 -2.9923 -0.0181 9 6 3.8971 -4.0341 0.6310 10 8 4.9084 -3.8734 1.2810 11 6 3.2634 -5.3989 0.5485 12 1 2.7933 -5.6408 -0.4047 13 6 3.9445 -6.5395 1.3076 14 1 4.8924 -6.3621 1.8158 15 6 3.6065 -7.9897 0.8968 16 8 2.1854 -7.9788 0.6398 17 6 1.6170 -7.1537 1.6800 18 6 2.6055 -5.9768 1.8346 19 1 2.5408 -5.3818 2.7457 20 6 3.4651 -0.9484 1.3228 21 7 2.0226 -0.7009 1.1938 22 6 1.1538 -1.1152 2.1677 23 1 0.1359 -1.3692 1.9110 24 6 1.5812 -1.2087 3.4850 25 7 2.7045 -0.6309 3.8550 26 14 0.5623 -2.1546 4.7327 27 1 -0.6461 -2.7061 4.0689 28 1 1.3716 -3.2678 5.2907 29 1 0.1520 -1.2424 5.8303 30 1 -0.3633 -1.0276 0.0052 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5093 -0.8925 33 1 1.7661 -0.1644 -2.1370 34 1 1.6031 -1.7238 -1.2938 35 1 4.0062 0.1487 -1.0990 36 1 3.9377 -1.3424 -2.0683 37 1 2.5319 -3.1210 -0.5382 38 1 4.1532 -8.2658 -0.0049 39 1 3.8399 -8.6783 1.7089 40 1 0.6351 -6.7876 1.3799 41 1 1.5434 -7.7147 2.6116 42 1 3.6518 -1.5743 2.1954 43 1 3.9903 0.0004 1.4319 44 1 3.0033 -0.6966 4.7755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071747491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:40 Heat of formation + Delta-G solvation = -26.679622 kcal Electronic energy + Delta-G solvation = -25382.989099 eV Core-core repulsion = 21915.938833 eV Total energy + Delta-G solvation = -3467.050265 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50629 -39.07100 -37.45386 -34.26797 -33.94518 -32.72755 -30.69255 -29.87589 -28.73576 -26.75409 -25.84768 -24.90816 -22.31203 -22.12729 -20.59691 -20.43180 -19.64069 -18.71517 -17.54822 -16.31985 -16.01045 -15.53983 -15.35544 -15.16473 -14.86465 -14.15699 -13.95819 -13.84548 -13.54560 -13.29577 -12.85764 -12.79926 -12.61174 -12.45388 -11.91891 -11.66289 -11.55526 -11.22826 -11.16745 -10.96456 -10.87345 -10.73424 -10.37570 -10.32483 -10.21540 -10.13852 -9.95884 -9.68528 -9.54785 -9.44713 -9.24543 -8.45520 -8.33423 -6.59708 -5.74443 -3.18422 2.83354 3.35218 3.42738 3.44482 3.44945 3.84795 4.01722 4.49248 4.66718 4.74778 4.86803 4.92920 5.30515 5.32415 5.35690 5.36483 5.42777 5.50874 5.51467 5.56840 5.60588 5.64323 5.72897 6.01807 6.02699 6.10425 6.14282 6.17723 6.33409 6.35152 6.44810 6.53213 6.61349 6.66342 6.70530 6.91716 7.04920 7.13349 7.40775 7.71071 7.84054 8.14207 8.49444 8.82636 9.23927 9.88563 10.44758 11.33354 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.006615 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.231892 B = 4231.829325 C = 5279.365602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.074 0.926 8 N -0.693 5.693 9 C 0.545 3.455 10 O -0.547 6.547 11 C -0.137 4.137 12 H 0.120 0.880 13 C -0.171 4.171 14 H 0.133 0.867 15 C 0.072 3.928 16 O -0.377 6.377 17 C 0.072 3.928 18 C -0.170 4.170 19 H 0.132 0.868 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.246 4.246 23 H 0.068 0.932 24 C 0.004 3.996 25 N -0.899 5.899 26 Si 0.894 3.106 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.396 0.604 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.024 0.976 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 -8.856 -9.162 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.092 0.908 8 N -0.343 5.343 9 C 0.330 3.670 10 O -0.425 6.425 11 C -0.158 4.158 12 H 0.138 0.862 13 C -0.190 4.190 14 H 0.151 0.849 15 C -0.005 4.005 16 O -0.296 6.296 17 C -0.004 4.004 18 C -0.189 4.189 19 H 0.150 0.850 20 C 0.035 3.965 21 N -0.305 5.305 22 C -0.376 4.376 23 H 0.086 0.914 24 C -0.195 4.195 25 N -0.544 5.544 26 Si 0.724 3.276 27 H -0.203 1.203 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.231 0.769 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.042 0.958 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.393 -8.819 -8.697 12.392 hybrid contribution -0.727 -0.268 0.754 1.081 sum -0.335 -9.087 -7.943 12.074 Atomic orbital electron populations 1.21794 0.96132 1.01258 1.00118 1.20461 0.92880 0.93617 0.87217 0.95813 1.22062 0.95143 1.00700 0.99057 1.21688 0.97031 1.00122 0.96815 1.21787 0.96889 0.81827 0.98247 0.90758 1.45734 1.29109 1.08310 1.51128 1.19227 0.84040 0.84604 0.79125 1.90670 1.25548 1.84988 1.41322 1.22426 1.03252 0.92537 0.97586 0.86211 1.24004 0.98571 0.92174 1.04248 0.84877 1.22965 0.82153 0.93821 1.01520 1.89134 1.19596 1.70603 1.50217 1.22988 0.97196 0.88617 0.91646 1.24393 0.95321 1.00731 0.98463 0.85008 1.21189 0.83727 0.97052 0.94519 1.44043 1.02702 1.64692 1.19100 1.19124 0.94593 1.37720 0.86164 0.91402 1.25050 0.97674 0.99795 0.96938 1.69997 1.23168 1.44502 1.16712 0.86356 0.79662 0.79774 0.81814 1.20270 1.21692 1.21830 0.92921 0.92107 0.94440 0.92895 0.92638 0.91154 0.93057 0.76931 0.88708 0.91099 0.88324 0.90939 0.88458 0.95802 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.95 37.16 0.30 -2.13 16 2 C 0.16 3.21 3.50 -67.60 -0.24 2.98 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.05 5.20 -26.62 -0.14 -2.19 16 5 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 6 C 0.12 2.25 2.81 -67.81 -0.19 2.06 16 7 H 0.07 1.47 7.58 -51.93 -0.39 1.07 16 8 N -0.69 -12.39 4.91 -53.69 -0.26 -12.66 16 9 C 0.54 10.28 7.62 -10.99 -0.08 10.20 16 10 O -0.55 -12.30 16.00 5.55 0.09 -12.21 16 11 C -0.14 -2.10 5.64 -90.39 -0.51 -2.61 16 12 H 0.12 1.63 8.07 -51.93 -0.42 1.21 16 13 C -0.17 -2.38 6.60 -89.05 -0.59 -2.97 16 14 H 0.13 1.97 7.81 -51.92 -0.41 1.56 16 15 C 0.07 0.81 7.53 37.93 0.29 1.10 16 16 O -0.38 -4.93 11.32 -35.23 -0.40 -5.33 16 17 C 0.07 0.90 7.54 37.93 0.29 1.18 16 18 C -0.17 -2.54 7.10 -87.67 -0.62 -3.16 16 19 H 0.13 2.24 8.14 -51.93 -0.42 1.82 16 20 C 0.16 3.83 4.89 -3.71 -0.02 3.82 16 21 N -0.58 -13.63 2.91 -164.77 -0.48 -14.11 16 22 C -0.25 -6.39 8.61 -15.06 -0.13 -6.52 16 23 H 0.07 1.73 6.20 -52.48 -0.33 1.40 16 24 C 0.00 0.11 4.96 -17.43 -0.09 0.03 16 25 N -0.90 -26.19 11.14 55.49 0.62 -25.57 16 26 Si 0.89 21.55 29.58 -169.99 -5.03 16.52 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H 0.05 0.95 7.40 -51.93 -0.38 0.56 16 31 H 0.06 1.19 7.66 -51.93 -0.40 0.80 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.86 6.40 -51.93 -0.33 0.53 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.40 6.37 6.77 -40.82 -0.28 6.09 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -30.87 344.56 -9.19 -40.06 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.03 Total: 8.34 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.89 Total: -0.23 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.13 Total: -52.34 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.31 Total: -17.54 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.87 -9.19 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071747491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.380 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds