Wall clock time and date at job start Tue Mar 31 2020 06:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.58184 * 2 1 4 4 C 1.53186 * 109.59143 * 239.70761 * 2 1 3 5 5 C 1.53033 * 109.31646 * 185.57783 * 4 2 1 6 6 C 1.53038 * 109.54018 * 61.36569 * 5 4 2 7 7 H 1.09003 * 109.49894 * 178.64836 * 6 5 4 8 8 N 1.46497 * 109.49356 * 58.58706 * 6 5 4 9 9 C 1.34776 * 120.00184 * 155.00316 * 8 6 5 10 10 O 1.21286 * 119.99731 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00415 * 180.02562 * 9 8 6 12 12 H 1.09001 * 115.48061 * 34.67173 * 11 9 8 13 13 C 1.53002 * 117.43479 * 179.97438 * 11 9 8 14 14 H 1.09009 * 119.80561 * 355.36248 * 13 11 9 15 15 C 1.54476 * 118.06637 * 199.10381 * 13 11 9 16 16 O 1.44418 * 104.80265 * 319.85803 * 15 13 11 17 17 C 1.44428 * 105.27725 * 319.49150 * 16 15 13 18 18 C 1.54475 * 104.80213 * 40.51147 * 17 16 15 19 19 H 1.09005 * 117.48968 * 197.22195 * 18 17 16 20 20 C 1.53191 * 109.31403 * 298.63894 * 6 5 4 21 21 N 1.46926 * 108.77695 * 54.62806 * 20 6 5 22 22 C 1.36935 * 120.62783 * 126.41329 * 21 20 6 23 23 H 1.08004 * 120.00140 * 208.99947 * 22 21 20 24 24 C 1.38807 * 120.00166 * 28.99887 * 22 21 20 25 25 N 1.31624 * 119.99866 * 15.03578 * 24 22 21 26 26 Si 1.86800 * 120.00100 * 195.03352 * 24 22 21 27 27 H 1.48494 * 109.47286 * 0.02562 * 26 24 22 28 28 H 1.48509 * 109.46995 * 120.00192 * 26 24 22 29 29 H 1.48502 * 109.47270 * 239.99780 * 26 24 22 30 30 H 1.08996 * 109.46776 * 180.29069 * 1 2 3 31 31 H 1.09000 * 109.47083 * 300.28611 * 1 2 3 32 32 H 1.08994 * 109.46886 * 60.28918 * 1 2 3 33 33 H 1.09006 * 109.49565 * 65.62321 * 4 2 1 34 34 H 1.08997 * 109.52440 * 305.55297 * 4 2 1 35 35 H 1.09003 * 109.45939 * 301.34608 * 5 4 2 36 36 H 1.08998 * 109.45269 * 181.38631 * 5 4 2 37 37 H 0.97006 * 120.00761 * 334.99855 * 8 6 5 38 38 H 1.08997 * 110.37031 * 78.69257 * 15 13 11 39 39 H 1.09004 * 110.36873 * 201.03357 * 15 13 11 40 40 H 1.09000 * 110.37508 * 159.34196 * 17 16 15 41 41 H 1.09000 * 110.37133 * 281.56845 * 17 16 15 42 42 H 1.08999 * 109.58612 * 174.41716 * 20 6 5 43 43 H 1.09003 * 109.58547 * 294.84403 * 20 6 5 44 44 H 0.96999 * 119.99765 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7280 -1.2461 5 6 3.5675 -0.8466 -1.1710 6 6 3.9570 -1.6657 0.0617 7 1 5.0413 -1.7701 0.1015 8 7 3.3406 -2.9923 -0.0181 9 6 3.8971 -4.0341 0.6310 10 8 4.9084 -3.8734 1.2810 11 6 3.2634 -5.3989 0.5485 12 1 2.7933 -5.6408 -0.4047 13 6 3.9445 -6.5395 1.3076 14 1 4.8924 -6.3621 1.8158 15 6 3.6065 -7.9897 0.8968 16 8 2.1854 -7.9788 0.6398 17 6 1.6170 -7.1537 1.6800 18 6 2.6055 -5.9768 1.8346 19 1 2.5408 -5.3818 2.7457 20 6 3.4651 -0.9484 1.3228 21 7 2.0226 -0.7009 1.1938 22 6 1.1538 -1.1152 2.1677 23 1 0.1359 -1.3692 1.9110 24 6 1.5812 -1.2087 3.4850 25 7 2.7045 -0.6309 3.8550 26 14 0.5623 -2.1546 4.7327 27 1 -0.6461 -2.7061 4.0689 28 1 1.3716 -3.2678 5.2907 29 1 0.1520 -1.2424 5.8303 30 1 -0.3633 -1.0276 0.0052 31 1 -0.3633 0.5183 0.8874 32 1 -0.3633 0.5093 -0.8925 33 1 1.7661 -0.1644 -2.1370 34 1 1.6031 -1.7238 -1.2938 35 1 4.0062 0.1487 -1.0990 36 1 3.9377 -1.3424 -2.0683 37 1 2.5319 -3.1210 -0.5382 38 1 4.1532 -8.2658 -0.0049 39 1 3.8399 -8.6783 1.7089 40 1 0.6351 -6.7876 1.3799 41 1 1.5434 -7.7147 2.6116 42 1 3.6518 -1.5743 2.1954 43 1 3.9903 0.0004 1.4319 44 1 3.0033 -0.6966 4.7755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071747491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:40 Heat of formation + Delta-G solvation = -47.286630 kcal Electronic energy + Delta-G solvation = -25383.882686 eV Core-core repulsion = 21915.938833 eV Total energy + Delta-G solvation = -3467.943852 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70641 -40.49795 -39.02052 -35.81201 -35.23024 -34.50551 -32.21545 -31.72574 -29.69116 -28.14296 -27.39856 -26.55335 -23.94269 -23.46729 -22.05105 -21.68399 -20.95614 -20.36847 -18.85895 -18.18506 -17.23932 -16.97199 -16.72577 -16.40533 -16.19504 -15.81220 -15.52052 -15.47120 -14.95721 -14.82963 -14.43496 -14.20978 -13.97459 -13.63722 -13.53726 -13.01772 -12.88837 -12.77758 -12.63961 -12.57985 -12.53061 -12.40875 -12.10299 -12.04768 -11.57912 -11.35957 -11.24336 -11.20017 -11.05642 -10.93698 -10.59784 -10.51162 -9.94559 -8.57378 -7.81248 -5.26552 1.39603 1.42038 1.43547 1.51312 2.14368 2.50407 2.61406 2.95375 3.34446 3.52772 3.62957 3.64178 3.72654 3.84055 4.00707 4.08677 4.13374 4.19904 4.32431 4.47383 4.49369 4.64636 4.67555 4.73663 4.74904 4.81531 4.82284 4.86252 4.96088 4.98337 5.04666 5.09459 5.11539 5.26979 5.32569 5.56901 5.62124 5.69884 5.70304 5.74533 5.74978 6.44639 6.68004 7.18979 7.35978 7.93440 8.44343 9.23986 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.006615 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.231892 B = 4231.829325 C = 5279.365602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.012 0.988 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.062 0.938 8 N -0.684 5.684 9 C 0.536 3.464 10 O -0.592 6.592 11 C -0.140 4.140 12 H 0.145 0.855 13 C -0.164 4.164 14 H 0.118 0.882 15 C 0.079 3.921 16 O -0.384 6.384 17 C 0.080 3.920 18 C -0.183 4.183 19 H 0.101 0.899 20 C 0.172 3.828 21 N -0.593 5.593 22 C -0.231 4.231 23 H 0.078 0.922 24 C -0.058 4.058 25 N -0.939 5.939 26 Si 0.949 3.051 27 H -0.256 1.256 28 H -0.301 1.301 29 H -0.298 1.298 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.408 0.592 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.048 0.952 43 H -0.006 1.006 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -10.595 -12.137 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.030 0.970 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.080 0.920 8 N -0.334 5.334 9 C 0.323 3.677 10 O -0.474 6.474 11 C -0.161 4.161 12 H 0.163 0.837 13 C -0.183 4.183 14 H 0.136 0.864 15 C 0.003 3.997 16 O -0.303 6.303 17 C 0.004 3.996 18 C -0.202 4.202 19 H 0.119 0.881 20 C 0.044 3.956 21 N -0.317 5.317 22 C -0.362 4.362 23 H 0.095 0.905 24 C -0.252 4.252 25 N -0.586 5.586 26 Si 0.778 3.222 27 H -0.180 1.180 28 H -0.228 1.228 29 H -0.226 1.226 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.245 0.755 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.012 0.988 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.456 -10.562 -11.733 15.854 hybrid contribution -0.143 0.364 1.664 1.709 sum -1.598 -10.198 -10.069 14.420 Atomic orbital electron populations 1.21720 0.94617 1.01404 1.00790 1.20782 0.94238 0.93154 0.87096 0.96983 1.21950 0.94599 1.01130 0.98066 1.21660 0.97404 0.99795 0.95941 1.21492 0.96161 0.82538 0.97707 0.91975 1.45656 1.29339 1.07594 1.50808 1.19929 0.83537 0.86137 0.78070 1.90646 1.27699 1.85926 1.43132 1.22369 1.04011 0.90813 0.98880 0.83714 1.24091 0.97460 0.93614 1.03094 0.86409 1.23107 0.81529 0.91798 1.03307 1.89129 1.20315 1.70400 1.50443 1.23018 0.96640 0.87443 0.92494 1.24398 0.97437 1.01375 0.96970 0.88073 1.20850 0.84274 0.95188 0.95240 1.44252 1.02140 1.65342 1.19962 1.19461 0.94981 1.35333 0.86423 0.90475 1.25754 0.98893 1.01580 0.98995 1.70183 1.25277 1.46996 1.16189 0.85459 0.78919 0.78104 0.79684 1.17968 1.22838 1.22613 0.92887 0.94692 0.90614 0.89169 0.91743 0.90995 0.89614 0.75504 0.86634 0.89026 0.87335 0.89229 0.93332 0.98838 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.95 71.98 0.57 -3.67 16 2 C 0.15 5.68 3.50 44.97 0.16 5.84 16 3 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 4 C -0.12 -3.28 5.20 30.67 0.16 -3.13 16 5 C -0.11 -3.17 5.59 30.62 0.17 -3.00 16 6 C 0.13 4.86 2.81 45.07 0.13 4.99 16 7 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 8 N -0.68 -24.01 4.91 -442.16 -2.17 -26.18 16 9 C 0.54 20.47 7.62 87.66 0.67 21.13 16 10 O -0.59 -27.90 16.00 -3.05 -0.05 -27.95 16 11 C -0.14 -4.15 5.64 -10.64 -0.06 -4.21 16 12 H 0.15 3.54 8.07 -2.39 -0.02 3.52 16 13 C -0.16 -4.39 6.60 -9.78 -0.06 -4.46 16 14 H 0.12 3.54 7.81 -2.38 -0.02 3.52 16 15 C 0.08 1.54 7.53 72.48 0.55 2.09 16 16 O -0.38 -8.77 11.32 -148.98 -1.69 -10.45 16 17 C 0.08 1.80 7.54 72.48 0.55 2.35 16 18 C -0.18 -5.35 7.10 -8.88 -0.06 -5.42 16 19 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16 20 C 0.17 8.50 4.89 86.36 0.42 8.93 16 21 N -0.59 -28.07 2.91 -675.22 -1.96 -30.03 16 22 C -0.23 -12.13 8.61 84.03 0.72 -11.40 16 23 H 0.08 3.86 6.20 -2.91 -0.02 3.84 16 24 C -0.06 -3.27 4.96 84.86 0.42 -2.85 16 25 N -0.94 -57.88 11.14 21.65 0.24 -57.64 16 26 Si 0.95 45.63 29.58 68.60 2.03 47.65 16 27 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 29 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 30 H 0.05 1.74 7.40 -2.39 -0.02 1.73 16 31 H 0.03 1.31 7.66 -2.39 -0.02 1.30 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.06 1.71 6.40 -2.39 -0.02 1.69 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.41 12.20 6.77 -92.70 -0.63 11.57 16 38 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 42 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 43 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -71.81 344.56 1.09 -70.72 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.37 Total: 26.67 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.33 Total: 7.21 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -3.90 Total: -113.85 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.74 Total: -38.40 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.81 1.09 -70.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071747491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.434 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds