Wall clock time and date at job start Tue Mar 31 2020 06:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58188 * 2 1 4 4 C 1.53187 * 109.70632 * 120.36004 * 2 1 3 5 5 C 1.53035 * 109.31042 * 174.49297 * 4 2 1 6 6 C 1.53042 * 109.53837 * 298.63077 * 5 4 2 7 7 H 1.09000 * 109.49742 * 301.41704 * 6 5 4 8 8 N 1.46502 * 109.49710 * 181.34995 * 6 5 4 9 9 C 1.34776 * 119.99927 * 155.00074 * 8 6 5 10 10 O 1.21283 * 119.99681 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00126 * 179.97438 * 9 8 6 12 12 H 1.08992 * 115.51356 * 325.37756 * 11 9 8 13 13 C 1.53005 * 117.43022 * 110.65478 * 11 9 8 14 14 H 1.09003 * 119.80964 * 355.36695 * 13 11 9 15 15 C 1.56584 * 116.77562 * 197.58121 * 13 11 9 16 16 O 1.44425 * 104.83040 * 273.07227 * 15 13 11 17 17 C 1.44421 * 105.27274 * 40.92879 * 16 15 13 18 18 C 1.53000 * 117.43388 * 180.02562 * 11 9 8 19 19 H 1.08998 * 119.80981 * 4.63962 * 18 11 9 20 20 C 1.52761 * 109.37887 * 61.24530 * 6 5 4 21 21 N 1.46921 * 109.58197 * 239.72283 * 2 1 3 22 22 C 1.36935 * 120.63677 * 6.43528 * 21 2 1 23 23 H 1.07998 * 119.99637 * 331.57272 * 22 21 2 24 24 C 1.38814 * 120.00461 * 151.56918 * 22 21 2 25 25 N 1.31622 * 119.99642 * 346.14358 * 24 22 21 26 26 Si 1.86793 * 120.00255 * 166.13649 * 24 22 21 27 27 H 1.48496 * 109.47600 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47485 * 300.00426 * 26 24 22 29 29 H 1.48500 * 109.47056 * 60.00346 * 26 24 22 30 30 H 1.09005 * 109.47331 * 180.28073 * 1 2 3 31 31 H 1.09001 * 109.47173 * 300.28009 * 1 2 3 32 32 H 1.08993 * 109.47668 * 60.27777 * 1 2 3 33 33 H 1.08997 * 109.49385 * 294.44402 * 4 2 1 34 34 H 1.08999 * 109.49547 * 54.53828 * 4 2 1 35 35 H 1.08999 * 109.46661 * 58.65677 * 5 4 2 36 36 H 1.09011 * 109.46050 * 178.63033 * 5 4 2 37 37 H 0.97003 * 120.00144 * 335.00538 * 8 6 5 38 38 H 1.09004 * 110.00669 * 154.40422 * 15 13 11 39 39 H 1.08999 * 110.80618 * 32.14509 * 15 13 11 40 40 H 1.09007 * 110.36851 * 200.66303 * 17 16 15 41 41 H 1.08998 * 110.37537 * 78.32141 * 17 16 15 42 42 H 1.09001 * 109.50726 * 185.70387 * 20 6 5 43 43 H 1.08994 * 109.43352 * 65.42271 * 20 6 5 44 44 H 0.96996 * 119.99657 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0465 -0.7289 1.2444 5 6 3.5706 -0.8443 1.1671 6 6 3.9602 -1.6607 -0.0673 7 1 3.5036 -2.6488 -0.0090 8 7 5.4177 -1.7979 -0.1228 9 6 5.9722 -2.8395 -0.7741 10 8 5.2645 -3.6628 -1.3146 11 6 7.4714 -2.9804 -0.8316 12 1 8.0290 -2.0455 -0.8871 13 6 8.1021 -4.1302 -0.0436 14 1 7.4771 -4.7604 0.5892 15 6 9.6381 -4.0296 0.2435 16 8 10.2701 -4.6115 -0.9175 17 6 9.5113 -4.1266 -2.0467 18 6 8.0378 -4.1844 -1.5869 19 1 7.3643 -4.8555 -2.1198 20 6 3.4647 -0.9472 -1.3239 21 7 2.0224 -0.6979 -1.1954 22 6 1.1532 -1.1132 -2.1686 23 1 0.1339 -1.3611 -1.9122 24 6 1.5822 -1.2155 -3.4849 25 7 2.7202 -0.6645 -3.8508 26 14 0.5447 -2.1351 -4.7366 27 1 1.2186 -2.1006 -6.0594 28 1 0.3798 -3.5456 -4.3024 29 1 -0.7890 -1.4909 -4.8432 30 1 -0.3634 -1.0277 0.0050 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5095 -0.8924 33 1 1.7689 -0.1673 2.1363 34 1 1.6080 -1.7257 1.2903 35 1 4.0072 0.1519 1.0963 36 1 3.9431 -1.3411 2.0631 37 1 5.9837 -1.1392 0.3093 38 1 9.8885 -4.6003 1.1379 39 1 9.9429 -2.9897 0.3603 40 1 9.6642 -4.7720 -2.9118 41 1 9.7951 -3.1010 -2.2823 42 1 3.6509 -1.5743 -2.1958 43 1 3.9910 0.0008 -1.4340 44 1 3.0202 -0.7363 -4.7704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071747492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:43 Heat of formation + Delta-G solvation = -28.439842 kcal Electronic energy + Delta-G solvation = -24483.754579 eV Core-core repulsion = 21016.627985 eV Total energy + Delta-G solvation = -3467.126594 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67076 -39.05280 -37.56270 -34.73399 -34.30366 -32.81808 -30.74226 -29.83118 -28.83314 -26.73813 -25.60680 -24.80590 -22.53856 -22.11832 -20.81915 -20.46906 -19.92966 -19.19792 -17.47453 -16.45303 -15.97049 -15.93640 -15.37737 -15.29451 -15.00449 -14.20654 -14.02070 -13.78740 -13.59577 -13.37703 -13.09423 -12.84843 -12.64276 -12.39337 -11.96513 -11.85492 -11.65473 -11.45199 -11.12616 -10.88155 -10.69637 -10.53853 -10.51956 -10.41200 -10.39267 -10.26786 -9.95601 -9.86118 -9.75619 -9.46548 -9.35005 -8.54815 -8.40560 -6.61268 -5.72495 -3.17522 2.62614 3.33421 3.43361 3.49071 3.50766 3.58092 3.81208 4.40642 4.46152 4.55135 4.63666 4.74194 4.97227 5.10355 5.16472 5.33877 5.37104 5.42773 5.46292 5.51948 5.55312 5.58745 5.68735 5.82700 5.96208 6.03519 6.09902 6.26360 6.30294 6.38421 6.44649 6.46708 6.50567 6.62078 6.74594 6.93765 7.04056 7.12156 7.33461 7.77139 7.85303 7.92297 8.51092 8.62292 9.25857 9.89996 10.44496 11.35396 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.004367 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.609135 B = 6410.391177 C = 7721.224436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.080 0.920 8 N -0.714 5.714 9 C 0.538 3.462 10 O -0.529 6.529 11 C -0.146 4.146 12 H 0.122 0.878 13 C -0.170 4.170 14 H 0.129 0.871 15 C 0.074 3.926 16 O -0.373 6.373 17 C 0.074 3.926 18 C -0.162 4.162 19 H 0.135 0.865 20 C 0.166 3.834 21 N -0.584 5.584 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.393 0.607 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.015 0.985 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.319 -1.790 10.470 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.099 0.901 8 N -0.364 5.364 9 C 0.323 3.677 10 O -0.405 6.405 11 C -0.167 4.167 12 H 0.139 0.861 13 C -0.189 4.189 14 H 0.147 0.853 15 C -0.002 4.002 16 O -0.292 6.292 17 C -0.003 4.003 18 C -0.180 4.180 19 H 0.153 0.847 20 C 0.039 3.961 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.547 5.547 26 Si 0.732 3.268 27 H -0.217 1.217 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.226 0.774 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.033 0.967 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.032 -2.523 9.879 15.022 hybrid contribution -0.416 0.115 -0.496 0.658 sum 10.615 -2.408 9.383 14.371 Atomic orbital electron populations 1.21805 0.95994 1.01389 1.00240 1.20482 0.93065 0.93570 0.87035 0.95766 1.22045 0.94306 1.01324 0.98933 1.21679 0.97400 0.99643 0.96691 1.21927 0.77681 1.00906 0.98352 0.90144 1.45981 1.08571 1.26576 1.55264 1.19348 0.87970 0.81686 0.78690 1.90752 1.62949 1.42261 1.44501 1.22452 0.94164 0.95361 1.04724 0.86062 1.24637 0.97172 1.01511 0.95585 0.85312 1.23310 0.88246 0.98815 0.89854 1.89175 1.53536 1.71318 1.15179 1.22969 0.87166 1.00080 0.90072 1.24156 0.98264 1.01110 0.94503 0.84744 1.21035 0.83481 0.97008 0.94540 1.44016 1.02666 1.64775 1.19274 1.19123 0.94484 1.38371 0.86285 0.91199 1.25065 0.97615 0.99612 0.97018 1.69971 1.22343 1.45317 1.17034 0.86377 0.79542 0.80198 0.80693 1.21660 1.20956 1.20923 0.92805 0.94325 0.91971 0.92664 0.92094 0.92272 0.93113 0.77397 0.88371 0.91583 0.88064 0.91643 0.88377 0.96659 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.95 37.16 0.30 -2.26 16 2 C 0.17 3.37 3.49 -67.60 -0.24 3.13 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.14 5.38 -26.62 -0.14 -2.28 16 5 C -0.12 -1.85 5.36 -26.69 -0.14 -1.99 16 6 C 0.12 2.25 2.59 -68.03 -0.18 2.08 16 7 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 8 N -0.71 -11.43 5.08 -53.90 -0.27 -11.70 16 9 C 0.54 9.27 7.58 -10.99 -0.08 9.18 16 10 O -0.53 -11.72 16.00 5.55 0.09 -11.63 16 11 C -0.15 -1.84 5.70 -91.77 -0.52 -2.36 16 12 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 13 C -0.17 -1.88 7.09 -87.87 -0.62 -2.50 16 14 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16 15 C 0.07 0.68 7.48 39.09 0.29 0.98 16 16 O -0.37 -4.29 11.65 -35.23 -0.41 -4.70 16 17 C 0.07 0.77 7.44 37.93 0.28 1.05 16 18 C -0.16 -2.02 6.60 -89.03 -0.59 -2.61 16 19 H 0.13 1.92 7.81 -51.93 -0.41 1.51 16 20 C 0.17 4.03 4.84 -3.93 -0.02 4.01 16 21 N -0.58 -14.57 3.00 -165.04 -0.50 -15.07 16 22 C -0.25 -6.96 8.62 -15.06 -0.13 -7.09 16 23 H 0.07 1.86 6.18 -52.49 -0.32 1.54 16 24 C 0.01 0.16 4.99 -17.43 -0.09 0.07 16 25 N -0.90 -26.81 11.04 55.49 0.61 -26.20 16 26 Si 0.90 22.49 29.58 -169.99 -5.03 17.46 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 30 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.39 4.85 8.60 -40.82 -0.35 4.50 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 2.82 5.99 -51.93 -0.31 2.51 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -32.97 348.15 -9.34 -42.31 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.20 Total: 4.86 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.88 Total: -0.60 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.16 Total: -52.96 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.32 Total: -16.33 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.97 -9.34 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071747492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.875 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds