Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.58188 * 2 1 4 4 C 1.53187 * 109.70632 * 120.36004 * 2 1 3 5 5 C 1.53035 * 109.31042 * 174.49297 * 4 2 1 6 6 C 1.53042 * 109.53837 * 298.63077 * 5 4 2 7 7 H 1.09000 * 109.49742 * 301.41704 * 6 5 4 8 8 N 1.46502 * 109.49710 * 181.34995 * 6 5 4 9 9 C 1.34776 * 119.99927 * 155.00074 * 8 6 5 10 10 O 1.21283 * 119.99681 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00126 * 179.97438 * 9 8 6 12 12 H 1.08992 * 115.51356 * 325.37756 * 11 9 8 13 13 C 1.53005 * 117.43022 * 110.65478 * 11 9 8 14 14 H 1.09003 * 119.80964 * 355.36695 * 13 11 9 15 15 C 1.56584 * 116.77562 * 197.58121 * 13 11 9 16 16 O 1.44425 * 104.83040 * 273.07227 * 15 13 11 17 17 C 1.44421 * 105.27274 * 40.92879 * 16 15 13 18 18 C 1.53000 * 117.43388 * 180.02562 * 11 9 8 19 19 H 1.08998 * 119.80981 * 4.63962 * 18 11 9 20 20 C 1.52761 * 109.37887 * 61.24530 * 6 5 4 21 21 N 1.46921 * 109.58197 * 239.72283 * 2 1 3 22 22 C 1.36935 * 120.63677 * 6.43528 * 21 2 1 23 23 H 1.07998 * 119.99637 * 331.57272 * 22 21 2 24 24 C 1.38814 * 120.00461 * 151.56918 * 22 21 2 25 25 N 1.31622 * 119.99642 * 346.14358 * 24 22 21 26 26 Si 1.86793 * 120.00255 * 166.13649 * 24 22 21 27 27 H 1.48496 * 109.47600 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.47485 * 300.00426 * 26 24 22 29 29 H 1.48500 * 109.47056 * 60.00346 * 26 24 22 30 30 H 1.09005 * 109.47331 * 180.28073 * 1 2 3 31 31 H 1.09001 * 109.47173 * 300.28009 * 1 2 3 32 32 H 1.08993 * 109.47668 * 60.27777 * 1 2 3 33 33 H 1.08997 * 109.49385 * 294.44402 * 4 2 1 34 34 H 1.08999 * 109.49547 * 54.53828 * 4 2 1 35 35 H 1.08999 * 109.46661 * 58.65677 * 5 4 2 36 36 H 1.09011 * 109.46050 * 178.63033 * 5 4 2 37 37 H 0.97003 * 120.00144 * 335.00538 * 8 6 5 38 38 H 1.09004 * 110.00669 * 154.40422 * 15 13 11 39 39 H 1.08999 * 110.80618 * 32.14509 * 15 13 11 40 40 H 1.09007 * 110.36851 * 200.66303 * 17 16 15 41 41 H 1.08998 * 110.37537 * 78.32141 * 17 16 15 42 42 H 1.09001 * 109.50726 * 185.70387 * 20 6 5 43 43 H 1.08994 * 109.43352 * 65.42271 * 20 6 5 44 44 H 0.96996 * 119.99657 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0465 -0.7289 1.2444 5 6 3.5706 -0.8443 1.1671 6 6 3.9602 -1.6607 -0.0673 7 1 3.5036 -2.6488 -0.0090 8 7 5.4177 -1.7979 -0.1228 9 6 5.9722 -2.8395 -0.7741 10 8 5.2645 -3.6628 -1.3146 11 6 7.4714 -2.9804 -0.8316 12 1 8.0290 -2.0455 -0.8871 13 6 8.1021 -4.1302 -0.0436 14 1 7.4771 -4.7604 0.5892 15 6 9.6381 -4.0296 0.2435 16 8 10.2701 -4.6115 -0.9175 17 6 9.5113 -4.1266 -2.0467 18 6 8.0378 -4.1844 -1.5869 19 1 7.3643 -4.8555 -2.1198 20 6 3.4647 -0.9472 -1.3239 21 7 2.0224 -0.6979 -1.1954 22 6 1.1532 -1.1132 -2.1686 23 1 0.1339 -1.3611 -1.9122 24 6 1.5822 -1.2155 -3.4849 25 7 2.7202 -0.6645 -3.8508 26 14 0.5447 -2.1351 -4.7366 27 1 1.2186 -2.1006 -6.0594 28 1 0.3798 -3.5456 -4.3024 29 1 -0.7890 -1.4909 -4.8432 30 1 -0.3634 -1.0277 0.0050 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5095 -0.8924 33 1 1.7689 -0.1673 2.1363 34 1 1.6080 -1.7257 1.2903 35 1 4.0072 0.1519 1.0963 36 1 3.9431 -1.3411 2.0631 37 1 5.9837 -1.1392 0.3093 38 1 9.8885 -4.6003 1.1379 39 1 9.9429 -2.9897 0.3603 40 1 9.6642 -4.7720 -2.9118 41 1 9.7951 -3.1010 -2.2823 42 1 3.6509 -1.5743 -2.1958 43 1 3.9910 0.0008 -1.4340 44 1 3.0202 -0.7363 -4.7704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071747492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = -51.707662 kcal Electronic energy + Delta-G solvation = -24484.763547 eV Core-core repulsion = 21016.627985 eV Total energy + Delta-G solvation = -3468.135563 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73246 -40.38812 -39.12852 -36.08450 -35.55861 -34.67837 -32.27238 -31.72694 -29.61231 -28.11415 -27.29316 -26.25985 -24.10318 -23.38057 -22.00650 -21.70036 -21.36555 -20.74837 -18.64670 -18.35830 -17.42401 -17.08853 -16.70178 -16.44043 -16.08895 -15.87820 -15.50895 -15.43010 -15.07493 -14.97158 -14.50316 -14.16727 -13.98820 -13.61271 -13.49878 -13.07614 -12.82897 -12.77384 -12.71906 -12.59164 -12.54048 -12.30165 -12.13709 -12.00353 -11.67690 -11.47528 -11.45422 -11.31021 -11.16689 -10.82287 -10.66364 -10.54698 -10.09943 -8.64171 -7.86275 -5.32662 1.36699 1.39851 1.44692 1.48614 2.07412 2.48064 2.51561 3.02591 3.29404 3.40773 3.51415 3.68095 3.77595 3.80552 3.94589 4.07615 4.08683 4.12360 4.26038 4.37515 4.40925 4.60916 4.68505 4.70064 4.75281 4.80302 4.80950 4.88122 4.97097 4.99515 5.03525 5.05796 5.17457 5.29146 5.33268 5.47487 5.53491 5.60965 5.68349 5.70373 5.80647 6.39853 6.60654 7.14580 7.30597 7.89157 8.37325 9.18533 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.004367 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.609135 B = 6410.391177 C = 7721.224436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.119 4.119 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.046 0.954 8 N -0.701 5.701 9 C 0.531 3.469 10 O -0.589 6.589 11 C -0.143 4.143 12 H 0.154 0.846 13 C -0.151 4.151 14 H 0.124 0.876 15 C 0.078 3.922 16 O -0.389 6.389 17 C 0.080 3.920 18 C -0.182 4.182 19 H 0.105 0.895 20 C 0.178 3.822 21 N -0.604 5.604 22 C -0.252 4.252 23 H 0.075 0.925 24 C -0.054 4.054 25 N -0.935 5.935 26 Si 0.957 3.043 27 H -0.296 1.296 28 H -0.287 1.287 29 H -0.267 1.267 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.415 0.585 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.045 0.955 43 H -0.002 1.002 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.402 -0.961 13.335 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.024 3.976 7 H 0.065 0.935 8 N -0.351 5.351 9 C 0.318 3.682 10 O -0.469 6.469 11 C -0.164 4.164 12 H 0.171 0.829 13 C -0.170 4.170 14 H 0.142 0.858 15 C 0.002 3.998 16 O -0.308 6.308 17 C 0.004 3.996 18 C -0.201 4.201 19 H 0.123 0.877 20 C 0.050 3.950 21 N -0.329 5.329 22 C -0.383 4.383 23 H 0.093 0.907 24 C -0.249 4.249 25 N -0.581 5.581 26 Si 0.786 3.214 27 H -0.223 1.223 28 H -0.213 1.213 29 H -0.192 1.192 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.252 0.748 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.016 0.984 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.124 -1.657 12.804 17.711 hybrid contribution -0.794 -0.132 -1.338 1.561 sum 11.330 -1.789 11.467 16.219 Atomic orbital electron populations 1.21741 0.94798 1.01106 1.01112 1.20809 0.94272 0.93450 0.86661 0.95910 1.21955 0.94669 1.00798 0.98377 1.21646 0.97013 1.00039 0.95758 1.21439 0.79336 0.98962 0.97832 0.93532 1.45798 1.07553 1.26916 1.54882 1.20205 0.89930 0.80814 0.77251 1.90726 1.64858 1.44431 1.46870 1.22378 0.90841 0.97177 1.06032 0.82876 1.24741 0.98541 0.99478 0.94260 0.85809 1.23515 0.85916 1.00617 0.89760 1.89164 1.53704 1.71964 1.15976 1.22995 0.85224 1.01278 0.90111 1.24173 0.99211 1.00778 0.95976 0.87694 1.20715 0.83701 0.95397 0.95143 1.44321 1.02595 1.65684 1.20270 1.19481 0.95012 1.36849 0.86936 0.90732 1.25785 0.98931 1.01208 0.98969 1.70141 1.24048 1.47318 1.16627 0.85484 0.78801 0.78820 0.78306 1.22262 1.21321 1.19235 0.93643 0.90181 0.94318 0.88474 0.93119 0.90653 0.89573 0.74764 0.86336 0.89180 0.87413 0.89900 0.93633 0.98432 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.95 71.98 0.57 -4.10 16 2 C 0.15 6.06 3.49 44.97 0.16 6.22 16 3 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -3.65 5.38 30.67 0.16 -3.48 16 5 C -0.11 -3.08 5.36 30.62 0.16 -2.92 16 6 C 0.13 5.06 2.59 44.93 0.12 5.18 16 7 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 8 N -0.70 -22.03 5.08 -442.85 -2.25 -24.28 16 9 C 0.53 18.62 7.58 87.66 0.66 19.29 16 10 O -0.59 -27.76 16.00 -3.04 -0.05 -27.81 16 11 C -0.14 -3.47 5.70 -11.54 -0.07 -3.53 16 12 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 13 C -0.15 -3.10 7.09 -9.01 -0.06 -3.16 16 14 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 15 C 0.08 1.17 7.48 73.23 0.55 1.72 16 16 O -0.39 -7.97 11.65 -148.98 -1.74 -9.71 16 17 C 0.08 1.55 7.44 72.48 0.54 2.09 16 18 C -0.18 -4.55 6.60 -9.76 -0.06 -4.61 16 19 H 0.10 3.24 7.81 -2.39 -0.02 3.22 16 20 C 0.18 8.93 4.84 86.22 0.42 9.34 16 21 N -0.60 -30.81 3.00 -676.08 -2.03 -32.84 16 22 C -0.25 -14.28 8.62 84.03 0.72 -13.55 16 23 H 0.08 4.05 6.18 -2.91 -0.02 4.03 16 24 C -0.05 -3.19 4.99 84.86 0.42 -2.76 16 25 N -0.93 -58.38 11.04 21.65 0.24 -58.14 16 26 Si 0.96 47.91 29.58 68.60 2.03 49.94 16 27 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 30 H 0.04 1.68 7.44 -2.38 -0.02 1.66 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.54 7.62 -2.39 -0.02 1.52 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.42 9.29 8.60 -92.71 -0.80 8.49 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 42 H 0.05 2.78 5.99 -2.39 -0.01 2.76 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -77.93 348.15 0.69 -77.24 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.19 Total: 19.88 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 4.30 Total: 5.72 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -4.04 Total: -115.26 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -1.78 Total: -37.51 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -77.93 0.69 -77.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071747492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.533 kcal (2) G-P(sol) polarization free energy of solvation -77.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds