Wall clock time and date at job start Tue Mar 31 2020 06:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.59095 * 2 1 4 4 C 1.53196 * 109.70444 * 239.64199 * 2 1 3 5 5 C 1.53035 * 109.34034 * 185.52786 * 4 2 1 6 6 C 1.53037 * 109.53865 * 61.31913 * 5 4 2 7 7 H 1.08995 * 109.50208 * 58.65050 * 6 5 4 8 8 N 1.46505 * 109.49676 * 178.71945 * 6 5 4 9 9 C 1.34779 * 119.99893 * 204.93337 * 8 6 5 10 10 O 1.21280 * 120.00130 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99755 * 179.97438 * 9 8 6 12 12 H 1.08997 * 115.51078 * 34.63232 * 11 9 8 13 13 C 1.52998 * 117.42961 * 180.02562 * 11 9 8 14 14 H 1.09004 * 119.80996 * 355.36457 * 13 11 9 15 15 C 1.54480 * 118.06423 * 199.10271 * 13 11 9 16 16 O 1.46764 * 103.67225 * 272.63058 * 15 13 11 17 17 C 1.44422 * 105.42435 * 40.62521 * 16 15 13 18 18 C 1.53004 * 117.42881 * 249.34727 * 11 9 8 19 19 H 1.08999 * 119.81319 * 4.63185 * 18 11 9 20 20 C 1.53194 * 109.33798 * 298.67829 * 6 5 4 21 21 N 1.46922 * 109.58381 * 120.28731 * 2 1 3 22 22 C 1.36938 * 120.63446 * 353.51176 * 21 2 1 23 23 H 1.08002 * 119.99828 * 29.53145 * 22 21 2 24 24 C 1.38805 * 120.00373 * 209.53957 * 22 21 2 25 25 N 1.31621 * 120.00392 * 15.61462 * 24 22 21 26 26 Si 1.86800 * 120.00153 * 195.61663 * 24 22 21 27 27 H 1.48498 * 109.47146 * 94.71837 * 26 24 22 28 28 H 1.48499 * 109.47250 * 214.72023 * 26 24 22 29 29 H 1.48501 * 109.47240 * 334.71829 * 26 24 22 30 30 H 1.09002 * 109.47142 * 299.72153 * 1 2 3 31 31 H 1.09005 * 109.46948 * 59.71873 * 1 2 3 32 32 H 1.09001 * 109.47350 * 179.71371 * 1 2 3 33 33 H 1.08998 * 109.49664 * 305.46348 * 4 2 1 34 34 H 1.08996 * 109.49644 * 65.55653 * 4 2 1 35 35 H 1.09001 * 109.43051 * 301.31358 * 5 4 2 36 36 H 1.09004 * 109.48782 * 181.35556 * 5 4 2 37 37 H 0.96995 * 120.00237 * 24.93087 * 8 6 5 38 38 H 1.08994 * 110.37508 * 30.73851 * 15 13 11 39 39 H 1.09004 * 110.36939 * 153.07236 * 15 13 11 40 40 H 1.09001 * 110.37543 * 200.46305 * 17 16 15 41 41 H 1.08999 * 110.47071 * 78.16682 * 17 16 15 42 42 H 1.09007 * 109.58805 * 174.40565 * 20 6 5 43 43 H 1.08995 * 109.58936 * 294.83801 * 20 6 5 44 44 H 0.96999 * 120.00527 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5705 -0.8452 -1.1678 6 6 3.9600 -1.6610 0.0671 7 1 3.5039 -2.6492 0.0090 8 7 5.4176 -1.7976 0.1230 9 6 5.9724 -2.8380 0.7759 10 8 5.2650 -3.6609 1.3176 11 6 7.4717 -2.9789 0.8329 12 1 8.0293 -2.0439 0.8865 13 6 8.0383 -4.1822 1.5890 14 1 7.3649 -4.8528 2.1229 15 6 9.5120 -4.1236 2.0486 16 8 10.2568 -4.6340 0.8915 17 6 9.6133 -4.0558 -0.2650 18 6 8.1018 -4.1302 0.0465 19 1 7.4765 -4.7616 -0.5846 20 6 3.4653 -0.9426 1.3264 21 7 2.0224 -0.6981 1.1953 22 6 1.1533 -1.1126 2.1690 23 1 0.1386 -1.3769 1.9102 24 6 1.5763 -1.1930 3.4885 25 7 2.6873 -0.5936 3.8612 26 14 0.5690 -2.1519 4.7356 27 1 1.1025 -3.5334 4.8457 28 1 0.6515 -1.4825 6.0586 29 1 -0.8479 -2.2022 4.2939 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6079 -1.7257 -1.2905 34 1 1.7689 -0.1673 -2.1364 35 1 4.0071 0.1511 -1.0974 36 1 3.9429 -1.3422 -2.0636 37 1 5.9834 -1.1394 -0.3100 38 1 9.8025 -3.0948 2.2613 39 1 9.6604 -4.7502 2.9281 40 1 9.8457 -4.6357 -1.1581 41 1 9.9235 -3.0190 -0.3952 42 1 3.6522 -1.5667 2.2004 43 1 3.9885 0.0074 1.4346 44 1 2.9827 -0.6494 4.7835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071747493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:46 Heat of formation + Delta-G solvation = -29.317762 kcal Electronic energy + Delta-G solvation = -24476.863174 eV Core-core repulsion = 21009.698510 eV Total energy + Delta-G solvation = -3467.164664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63955 -39.01307 -37.54240 -34.65165 -34.28433 -32.81342 -30.73696 -29.85179 -28.89532 -26.76368 -25.61831 -24.81615 -22.54567 -22.12285 -20.75886 -20.47207 -19.94276 -19.20598 -17.48860 -16.44917 -15.94581 -15.91309 -15.32780 -15.26871 -14.99955 -14.19428 -14.00948 -13.79949 -13.59921 -13.37704 -13.09038 -12.86975 -12.67058 -12.39828 -11.96070 -11.87738 -11.67401 -11.46506 -11.12609 -10.88707 -10.72568 -10.54562 -10.51226 -10.40806 -10.39313 -10.25456 -9.95829 -9.88924 -9.76839 -9.46302 -9.36140 -8.55327 -8.41482 -6.61174 -5.73985 -3.18712 2.61105 3.32410 3.43263 3.49720 3.50650 3.56346 3.74999 4.41610 4.44430 4.54879 4.70752 4.72434 4.96358 5.10613 5.15682 5.33247 5.36373 5.43320 5.45651 5.50849 5.54313 5.58118 5.68104 5.82413 5.95781 6.02443 6.09368 6.26342 6.29679 6.38520 6.39297 6.44637 6.49141 6.61818 6.73328 6.92776 7.04344 7.12319 7.31321 7.73005 7.85517 7.91212 8.50199 8.61053 9.24848 9.89090 10.44402 11.34238 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.004368 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.980086 B = 6408.027574 C = 7714.597026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.714 5.714 9 C 0.539 3.461 10 O -0.529 6.529 11 C -0.145 4.145 12 H 0.122 0.878 13 C -0.160 4.160 14 H 0.135 0.865 15 C 0.073 3.927 16 O -0.379 6.379 17 C 0.076 3.924 18 C -0.171 4.171 19 H 0.126 0.874 20 C 0.169 3.831 21 N -0.584 5.584 22 C -0.254 4.254 23 H 0.071 0.929 24 C 0.007 3.993 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.393 0.607 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.017 0.983 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -1.879 -10.468 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.099 0.901 8 N -0.364 5.364 9 C 0.323 3.677 10 O -0.405 6.405 11 C -0.166 4.166 12 H 0.140 0.860 13 C -0.179 4.179 14 H 0.153 0.847 15 C -0.003 4.003 16 O -0.298 6.298 17 C -0.001 4.001 18 C -0.190 4.190 19 H 0.144 0.856 20 C 0.042 3.958 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.226 0.774 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.035 0.965 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.042 -2.609 -9.889 15.051 hybrid contribution -0.377 0.097 0.498 0.632 sum 10.665 -2.512 -9.391 14.431 Atomic orbital electron populations 1.21800 0.95970 1.01385 1.00232 1.20486 0.93085 0.93544 0.87040 0.95779 1.22044 0.94281 1.01328 0.98940 1.21674 0.97424 0.99641 0.96657 1.22013 0.77640 1.00896 0.98325 0.90087 1.45989 1.08593 1.26678 1.55159 1.19345 0.87959 0.81673 0.78707 1.90752 1.62962 1.42248 1.44497 1.22452 0.94171 0.95322 1.04647 0.86036 1.24121 0.98243 1.01086 0.94426 0.84730 1.23370 0.87230 0.99898 0.89764 1.89520 1.54675 1.70709 1.14906 1.22884 0.88319 0.98894 0.89974 1.24189 0.97580 1.01595 0.95624 0.85587 1.21073 0.83580 0.96858 0.94331 1.44034 1.02577 1.64835 1.19267 1.19163 0.95036 1.38082 0.86049 0.91173 1.25076 0.97817 0.99278 0.97033 1.70004 1.24133 1.43641 1.16679 0.86313 0.79741 0.80043 0.80918 1.21372 1.21815 1.20346 0.91960 0.94342 0.92815 0.92093 0.92658 0.92268 0.93092 0.77385 0.91351 0.87779 0.88296 0.91798 0.88847 0.96520 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.95 37.16 0.30 -2.26 16 2 C 0.17 3.37 3.49 -67.60 -0.24 3.13 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.13 5.38 -26.61 -0.14 -2.27 16 5 C -0.12 -1.84 5.36 -26.69 -0.14 -1.98 16 6 C 0.12 2.24 2.60 -67.81 -0.18 2.06 16 7 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 8 N -0.71 -11.36 5.08 -53.69 -0.27 -11.64 16 9 C 0.54 9.22 7.58 -10.98 -0.08 9.14 16 10 O -0.53 -11.68 16.00 5.56 0.09 -11.59 16 11 C -0.14 -1.82 5.73 -91.77 -0.53 -2.34 16 12 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.16 -1.99 6.59 -89.08 -0.59 -2.58 16 14 H 0.13 1.91 7.81 -51.93 -0.41 1.51 16 15 C 0.07 0.76 7.60 37.93 0.29 1.05 16 16 O -0.38 -4.38 11.72 -35.23 -0.41 -4.79 16 17 C 0.08 0.71 7.45 37.95 0.28 0.99 16 18 C -0.17 -1.89 6.91 -89.06 -0.62 -2.51 16 19 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 20 C 0.17 4.07 4.86 -3.71 -0.02 4.05 16 21 N -0.58 -14.53 2.99 -164.77 -0.49 -15.03 16 22 C -0.25 -6.97 8.58 -15.06 -0.13 -7.10 16 23 H 0.07 1.88 6.23 -52.49 -0.33 1.55 16 24 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 25 N -0.90 -26.74 11.22 55.49 0.62 -26.11 16 26 Si 0.90 22.47 29.58 -169.99 -5.03 17.44 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.06 1.26 7.63 -51.93 -0.40 0.87 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.39 4.82 8.60 -40.82 -0.35 4.47 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 2.67 6.13 -51.93 -0.32 2.36 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -33.05 348.49 -9.33 -42.38 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.21 Total: 4.60 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.88 Total: -0.51 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.14 Total: -52.78 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.32 Total: -16.38 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.05 -9.33 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071747493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.058 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds