Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.59095 * 2 1 4 4 C 1.53196 * 109.70444 * 239.64199 * 2 1 3 5 5 C 1.53035 * 109.34034 * 185.52786 * 4 2 1 6 6 C 1.53037 * 109.53865 * 61.31913 * 5 4 2 7 7 H 1.08995 * 109.50208 * 58.65050 * 6 5 4 8 8 N 1.46505 * 109.49676 * 178.71945 * 6 5 4 9 9 C 1.34779 * 119.99893 * 204.93337 * 8 6 5 10 10 O 1.21280 * 120.00130 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99755 * 179.97438 * 9 8 6 12 12 H 1.08997 * 115.51078 * 34.63232 * 11 9 8 13 13 C 1.52998 * 117.42961 * 180.02562 * 11 9 8 14 14 H 1.09004 * 119.80996 * 355.36457 * 13 11 9 15 15 C 1.54480 * 118.06423 * 199.10271 * 13 11 9 16 16 O 1.46764 * 103.67225 * 272.63058 * 15 13 11 17 17 C 1.44422 * 105.42435 * 40.62521 * 16 15 13 18 18 C 1.53004 * 117.42881 * 249.34727 * 11 9 8 19 19 H 1.08999 * 119.81319 * 4.63185 * 18 11 9 20 20 C 1.53194 * 109.33798 * 298.67829 * 6 5 4 21 21 N 1.46922 * 109.58381 * 120.28731 * 2 1 3 22 22 C 1.36938 * 120.63446 * 353.51176 * 21 2 1 23 23 H 1.08002 * 119.99828 * 29.53145 * 22 21 2 24 24 C 1.38805 * 120.00373 * 209.53957 * 22 21 2 25 25 N 1.31621 * 120.00392 * 15.61462 * 24 22 21 26 26 Si 1.86800 * 120.00153 * 195.61663 * 24 22 21 27 27 H 1.48498 * 109.47146 * 94.71837 * 26 24 22 28 28 H 1.48499 * 109.47250 * 214.72023 * 26 24 22 29 29 H 1.48501 * 109.47240 * 334.71829 * 26 24 22 30 30 H 1.09002 * 109.47142 * 299.72153 * 1 2 3 31 31 H 1.09005 * 109.46948 * 59.71873 * 1 2 3 32 32 H 1.09001 * 109.47350 * 179.71371 * 1 2 3 33 33 H 1.08998 * 109.49664 * 305.46348 * 4 2 1 34 34 H 1.08996 * 109.49644 * 65.55653 * 4 2 1 35 35 H 1.09001 * 109.43051 * 301.31358 * 5 4 2 36 36 H 1.09004 * 109.48782 * 181.35556 * 5 4 2 37 37 H 0.96995 * 120.00237 * 24.93087 * 8 6 5 38 38 H 1.08994 * 110.37508 * 30.73851 * 15 13 11 39 39 H 1.09004 * 110.36939 * 153.07236 * 15 13 11 40 40 H 1.09001 * 110.37543 * 200.46305 * 17 16 15 41 41 H 1.08999 * 110.47071 * 78.16682 * 17 16 15 42 42 H 1.09007 * 109.58805 * 174.40565 * 20 6 5 43 43 H 1.08995 * 109.58936 * 294.83801 * 20 6 5 44 44 H 0.96999 * 120.00527 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5705 -0.8452 -1.1678 6 6 3.9600 -1.6610 0.0671 7 1 3.5039 -2.6492 0.0090 8 7 5.4176 -1.7976 0.1230 9 6 5.9724 -2.8380 0.7759 10 8 5.2650 -3.6609 1.3176 11 6 7.4717 -2.9789 0.8329 12 1 8.0293 -2.0439 0.8865 13 6 8.0383 -4.1822 1.5890 14 1 7.3649 -4.8528 2.1229 15 6 9.5120 -4.1236 2.0486 16 8 10.2568 -4.6340 0.8915 17 6 9.6133 -4.0558 -0.2650 18 6 8.1018 -4.1302 0.0465 19 1 7.4765 -4.7616 -0.5846 20 6 3.4653 -0.9426 1.3264 21 7 2.0224 -0.6981 1.1953 22 6 1.1533 -1.1126 2.1690 23 1 0.1386 -1.3769 1.9102 24 6 1.5763 -1.1930 3.4885 25 7 2.6873 -0.5936 3.8612 26 14 0.5690 -2.1519 4.7356 27 1 1.1025 -3.5334 4.8457 28 1 0.6515 -1.4825 6.0586 29 1 -0.8479 -2.2022 4.2939 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6079 -1.7257 -1.2905 34 1 1.7689 -0.1673 -2.1364 35 1 4.0071 0.1511 -1.0974 36 1 3.9429 -1.3422 -2.0636 37 1 5.9834 -1.1394 -0.3100 38 1 9.8025 -3.0948 2.2613 39 1 9.6604 -4.7502 2.9281 40 1 9.8457 -4.6357 -1.1581 41 1 9.9235 -3.0190 -0.3952 42 1 3.6522 -1.5667 2.2004 43 1 3.9885 0.0074 1.4346 44 1 2.9827 -0.6494 4.7835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071747493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -52.655145 kcal Electronic energy + Delta-G solvation = -24477.875159 eV Core-core repulsion = 21009.698510 eV Total energy + Delta-G solvation = -3468.176649 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71271 -40.34010 -39.10312 -36.06994 -35.45733 -34.67171 -32.26478 -31.74465 -29.67343 -28.12025 -27.30523 -26.28374 -24.11658 -23.38090 -22.00421 -21.63822 -21.36816 -20.75304 -18.65946 -18.35461 -17.42056 -17.07480 -16.67451 -16.40902 -16.04895 -15.87230 -15.48369 -15.43772 -15.06929 -14.97010 -14.50429 -14.17093 -13.98024 -13.62979 -13.50796 -13.10478 -12.83364 -12.76467 -12.75881 -12.60717 -12.56639 -12.29723 -12.12508 -11.98511 -11.68067 -11.47632 -11.44500 -11.31394 -11.16036 -10.82892 -10.68432 -10.56694 -10.10169 -8.64198 -7.87661 -5.33811 1.35734 1.39165 1.43462 1.49414 2.06760 2.47242 2.50591 2.96561 3.28215 3.40343 3.50279 3.67267 3.77535 3.86276 3.94613 4.07475 4.08689 4.13689 4.25447 4.37498 4.40374 4.59564 4.67977 4.69920 4.75345 4.80091 4.80609 4.88274 4.97306 4.99722 5.03164 5.05921 5.17511 5.29104 5.32191 5.46230 5.53613 5.59905 5.63483 5.68848 5.78092 6.39404 6.60003 7.13941 7.29919 7.88207 8.37206 9.17587 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.004368 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.980086 B = 6408.027574 C = 7714.597026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.048 0.952 8 N -0.701 5.701 9 C 0.531 3.469 10 O -0.589 6.589 11 C -0.142 4.142 12 H 0.154 0.846 13 C -0.180 4.180 14 H 0.105 0.895 15 C 0.080 3.920 16 O -0.396 6.396 17 C 0.079 3.921 18 C -0.152 4.152 19 H 0.121 0.879 20 C 0.180 3.820 21 N -0.604 5.604 22 C -0.252 4.252 23 H 0.075 0.925 24 C -0.052 4.052 25 N -0.934 5.934 26 Si 0.955 3.045 27 H -0.299 1.299 28 H -0.292 1.292 29 H -0.260 1.260 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.415 0.585 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.040 0.960 43 H -0.001 1.001 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.411 -1.073 -13.361 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.024 3.976 7 H 0.066 0.934 8 N -0.352 5.352 9 C 0.318 3.682 10 O -0.469 6.469 11 C -0.163 4.163 12 H 0.172 0.828 13 C -0.199 4.199 14 H 0.123 0.877 15 C 0.004 3.996 16 O -0.315 6.315 17 C 0.003 3.997 18 C -0.171 4.171 19 H 0.139 0.861 20 C 0.053 3.947 21 N -0.328 5.328 22 C -0.382 4.382 23 H 0.092 0.908 24 C -0.247 4.247 25 N -0.580 5.580 26 Si 0.784 3.216 27 H -0.226 1.226 28 H -0.219 1.219 29 H -0.185 1.185 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.017 0.983 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.117 -1.767 -12.843 17.745 hybrid contribution -0.748 -0.143 1.349 1.549 sum 11.369 -1.910 -11.494 16.279 Atomic orbital electron populations 1.21736 0.94801 1.01098 1.01080 1.20812 0.94268 0.93422 0.86685 0.95959 1.21953 0.94660 1.00816 0.98347 1.21642 0.97020 1.00044 0.95736 1.21524 0.79295 0.98976 0.97761 0.93413 1.45805 1.07579 1.27012 1.54772 1.20196 0.89909 0.80803 0.77270 1.90727 1.64867 1.44418 1.46864 1.22378 0.90866 0.97143 1.05902 0.82816 1.24142 0.99214 1.00747 0.95834 0.87660 1.23418 0.85228 1.01163 0.89784 1.89508 1.54896 1.71378 1.15736 1.23089 0.86098 1.00679 0.89873 1.24277 0.98858 0.99625 0.94360 0.86131 1.20761 0.83779 0.95273 0.94907 1.44338 1.02516 1.65749 1.20230 1.19501 0.95498 1.36512 0.86698 0.90792 1.25782 0.99126 1.00883 0.98944 1.70155 1.25870 1.45640 1.16338 0.85425 0.79339 0.77940 0.78923 1.22632 1.21863 1.18465 0.94355 0.90199 0.93644 0.93075 0.88484 0.90657 0.89533 0.74749 0.89522 0.87020 0.86326 0.89419 0.94172 0.98266 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.95 71.98 0.57 -4.09 16 2 C 0.15 6.05 3.49 44.98 0.16 6.21 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.62 5.38 30.67 0.16 -3.46 16 5 C -0.11 -3.05 5.36 30.62 0.16 -2.89 16 6 C 0.13 5.03 2.60 45.07 0.12 5.15 16 7 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 8 N -0.70 -21.87 5.08 -442.16 -2.25 -24.12 16 9 C 0.53 18.52 7.58 87.66 0.66 19.18 16 10 O -0.59 -27.64 16.00 -3.03 -0.05 -27.68 16 11 C -0.14 -3.41 5.73 -11.54 -0.07 -3.48 16 12 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.18 -4.47 6.59 -9.79 -0.06 -4.53 16 14 H 0.11 3.23 7.81 -2.39 -0.02 3.21 16 15 C 0.08 1.52 7.60 72.49 0.55 2.07 16 16 O -0.40 -8.18 11.72 -148.98 -1.75 -9.92 16 17 C 0.08 1.20 7.45 72.49 0.54 1.74 16 18 C -0.15 -3.12 6.91 -9.78 -0.07 -3.19 16 19 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 20 C 0.18 9.01 4.86 86.36 0.42 9.43 16 21 N -0.60 -30.70 2.99 -675.22 -2.02 -32.72 16 22 C -0.25 -14.21 8.58 84.03 0.72 -13.49 16 23 H 0.07 4.03 6.23 -2.91 -0.02 4.01 16 24 C -0.05 -3.07 4.94 84.86 0.42 -2.66 16 25 N -0.93 -58.24 11.22 21.65 0.24 -57.99 16 26 Si 0.95 47.90 29.58 68.60 2.03 49.93 16 27 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 28 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 30 H 0.04 1.53 7.63 -2.39 -0.02 1.51 16 31 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.04 1.68 7.44 -2.39 -0.02 1.66 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.42 9.20 8.60 -92.71 -0.80 8.40 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.04 2.44 6.13 -2.38 -0.01 2.42 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -78.06 348.49 0.70 -77.36 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.19 Total: 19.14 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 4.29 Total: 6.01 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.02 Total: -114.83 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.79 Total: -37.61 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -78.06 0.70 -77.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071747493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.707 kcal (2) G-P(sol) polarization free energy of solvation -78.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds