Wall clock time and date at job start Tue Mar 31 2020 06:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.70311 * 2 1 4 4 C 1.53622 * 109.66184 * 120.59833 * 2 1 3 5 5 C 1.53040 * 109.23950 * 174.55109 * 4 2 1 6 6 C 1.53036 * 109.53729 * 298.50483 * 5 4 2 7 7 H 1.09008 * 109.52613 * 181.33380 * 6 5 4 8 8 N 1.46501 * 109.49871 * 301.41617 * 6 5 4 9 9 C 1.34782 * 119.99890 * 204.83282 * 8 6 5 10 10 O 1.21278 * 119.99891 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00041 * 179.97438 * 9 8 6 12 12 H 1.09005 * 115.50831 * 325.37950 * 11 9 8 13 13 C 1.52999 * 117.43137 * 110.65286 * 11 9 8 14 14 H 1.09008 * 119.80389 * 355.37246 * 13 11 9 15 15 C 1.54475 * 118.06965 * 198.08684 * 13 11 9 16 16 O 1.44422 * 104.80418 * 273.17770 * 15 13 11 17 17 C 1.44428 * 105.27525 * 40.50770 * 16 15 13 18 18 C 1.52992 * 117.43514 * 180.02562 * 11 9 8 19 19 H 1.09005 * 119.80967 * 5.65213 * 18 11 9 20 20 C 1.53197 * 109.31135 * 61.37011 * 6 5 4 21 21 N 1.46923 * 108.77078 * 305.36101 * 20 6 5 22 22 C 1.36942 * 120.63090 * 233.58286 * 21 20 6 23 23 H 1.08005 * 119.99451 * 150.17111 * 22 21 20 24 24 C 1.38804 * 119.99915 * 330.17148 * 22 21 20 25 25 N 1.31622 * 120.00247 * 344.49914 * 24 22 21 26 26 Si 1.86810 * 119.99877 * 164.49868 * 24 22 21 27 27 H 1.48498 * 109.46844 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47269 * 120.00142 * 26 24 22 29 29 H 1.48497 * 109.46750 * 239.99912 * 26 24 22 30 30 H 1.09003 * 109.46988 * 180.35132 * 1 2 3 31 31 H 1.09000 * 109.47256 * 300.35038 * 1 2 3 32 32 H 1.09003 * 109.46858 * 60.35143 * 1 2 3 33 33 H 1.08994 * 109.63925 * 54.55502 * 4 2 1 34 34 H 1.09003 * 109.45936 * 294.42801 * 4 2 1 35 35 H 1.09004 * 109.45814 * 178.49037 * 5 4 2 36 36 H 1.08999 * 109.46493 * 58.52573 * 5 4 2 37 37 H 0.96991 * 119.99934 * 24.83986 * 8 6 5 38 38 H 1.08995 * 110.37148 * 154.34385 * 15 13 11 39 39 H 1.09005 * 110.37047 * 32.00692 * 15 13 11 40 40 H 1.09001 * 110.36975 * 200.65749 * 17 16 15 41 41 H 1.09003 * 110.46582 * 78.36730 * 17 16 15 42 42 H 1.09002 * 109.58287 * 185.57939 * 20 6 5 43 43 H 1.08995 * 109.70543 * 65.22031 * 20 6 5 44 44 H 0.97001 * 120.00021 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7364 1.2452 5 6 3.5711 -0.8498 1.1676 6 6 3.9615 -1.6628 -0.0689 7 1 5.0460 -1.7636 -0.1111 8 7 3.3494 -2.9917 0.0064 9 6 3.9065 -4.0284 -0.6505 10 8 4.9148 -3.8612 -1.3034 11 6 3.2773 -5.3955 -0.5726 12 1 2.8107 -5.6439 0.3807 13 6 2.6200 -5.9423 -1.8415 14 1 2.5543 -5.3154 -2.7308 15 6 1.6196 -7.1103 -1.6964 16 8 2.4354 -8.3015 -1.7328 17 6 3.6083 -7.9834 -0.9524 18 6 3.9587 -6.5299 -1.3403 19 1 4.9123 -6.3516 -1.8373 20 6 3.4657 -0.9419 -1.3264 21 7 2.0226 -0.6996 -1.1945 22 6 1.1537 -1.1126 -2.1691 23 1 0.1409 -1.3837 -1.9099 24 6 1.5748 -1.1827 -3.4899 25 7 2.6832 -0.5772 -3.8604 26 14 0.5683 -2.1366 -4.7416 27 1 -0.6239 -2.7209 -4.0764 28 1 0.1317 -1.2216 -5.8266 29 1 1.3974 -3.2261 -5.3166 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3634 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8932 33 1 1.6096 -1.7338 1.2889 34 1 1.7688 -0.1778 2.1390 35 1 3.9442 -1.3482 2.0624 36 1 4.0065 0.1470 1.0990 37 1 2.5432 -3.1254 0.5288 38 1 0.9123 -7.1093 -2.5258 39 1 1.0910 -7.0413 -0.7456 40 1 4.4287 -8.6532 -1.2103 41 1 3.3866 -8.0486 0.1128 42 1 3.6532 -1.5637 -2.2019 43 1 3.9875 0.0088 -1.4349 44 1 2.9772 -0.6260 -4.7835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071747494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:49 Heat of formation + Delta-G solvation = -28.166161 kcal Electronic energy + Delta-G solvation = -25348.156991 eV Core-core repulsion = 21881.042265 eV Total energy + Delta-G solvation = -3467.114726 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57078 -39.08347 -37.48127 -34.50743 -34.05413 -32.72503 -30.71534 -29.89686 -28.75555 -26.64180 -25.71416 -24.88516 -22.43017 -22.16832 -20.64435 -20.48358 -19.97170 -18.74825 -17.51084 -16.37051 -15.88054 -15.72851 -15.33156 -15.13382 -14.72685 -14.26228 -14.00835 -13.87601 -13.53974 -13.25115 -12.91948 -12.85796 -12.59038 -12.47295 -11.94740 -11.72645 -11.54301 -11.24137 -11.17788 -10.98744 -10.89432 -10.74138 -10.39705 -10.34864 -10.33460 -10.19732 -9.97844 -9.69135 -9.56895 -9.47389 -9.29656 -8.46379 -8.37333 -6.60050 -5.75985 -3.20632 2.80774 3.35633 3.42851 3.45081 3.45452 3.85253 3.97148 4.48607 4.60946 4.64157 4.90479 4.91017 5.13562 5.25088 5.29284 5.30926 5.33947 5.43373 5.49634 5.58020 5.58868 5.66536 5.72629 5.99387 6.08578 6.12970 6.14751 6.16576 6.31195 6.33314 6.42750 6.50596 6.59048 6.62416 6.67611 6.88919 7.03684 7.11269 7.37660 7.67699 7.83089 8.09458 8.48398 8.77810 9.22573 9.87063 10.43847 11.31859 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.006551 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.572877 B = 4273.283701 C = 5374.746401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.075 0.925 8 N -0.693 5.693 9 C 0.543 3.457 10 O -0.545 6.545 11 C -0.142 4.142 12 H 0.117 0.883 13 C -0.163 4.163 14 H 0.130 0.870 15 C 0.075 3.925 16 O -0.374 6.374 17 C 0.075 3.925 18 C -0.167 4.167 19 H 0.133 0.867 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.249 4.249 23 H 0.068 0.932 24 C 0.006 3.994 25 N -0.898 5.898 26 Si 0.892 3.108 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.025 0.975 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -8.308 10.854 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.093 0.907 8 N -0.343 5.343 9 C 0.328 3.672 10 O -0.422 6.422 11 C -0.163 4.163 12 H 0.135 0.865 13 C -0.182 4.182 14 H 0.148 0.852 15 C -0.002 4.002 16 O -0.293 6.293 17 C -0.002 4.002 18 C -0.186 4.186 19 H 0.151 0.849 20 C 0.036 3.964 21 N -0.305 5.305 22 C -0.378 4.378 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.542 5.542 26 Si 0.723 3.277 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.216 1.216 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.230 0.770 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.043 0.957 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.149 -8.358 10.102 13.112 hybrid contribution -0.791 -0.116 -0.426 0.906 sum -0.642 -8.474 9.675 12.877 Atomic orbital electron populations 1.21785 0.96101 1.01174 1.00188 1.20556 0.92873 0.93574 0.87200 0.95761 1.22135 0.95098 1.00636 0.99077 1.21687 0.97047 1.00164 0.96737 1.21783 0.96934 0.81763 0.98245 0.90738 1.45739 1.29369 1.08452 1.50730 1.19251 0.84049 0.84668 0.79260 1.90679 1.25595 1.84814 1.41159 1.22359 1.03307 0.93214 0.97456 0.86488 1.24173 0.94402 1.00939 0.98653 0.85159 1.22941 0.92707 0.82088 1.02425 1.89170 1.32062 1.35189 1.72890 1.22916 0.88652 0.93355 0.95277 1.24154 0.98641 0.91584 1.04178 0.84874 1.21155 0.83809 0.97006 0.94457 1.44052 1.02591 1.64823 1.19058 1.19096 0.95101 1.37725 0.85924 0.91466 1.25073 0.97751 0.99467 0.97007 1.69999 1.24103 1.43534 1.16581 0.86379 0.79645 0.79858 0.81860 1.20243 1.21789 1.21596 0.92982 0.94462 0.92036 0.92669 0.92925 0.93069 0.91129 0.76969 0.88084 0.91707 0.88348 0.91989 0.88741 0.95724 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.96 37.16 0.30 -2.09 16 2 C 0.16 3.17 3.51 -67.37 -0.24 2.93 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.01 5.23 -26.39 -0.14 -2.14 16 5 C -0.12 -1.82 5.58 -26.69 -0.15 -1.97 16 6 C 0.12 2.21 2.81 -67.81 -0.19 2.02 16 7 H 0.07 1.45 7.58 -51.92 -0.39 1.05 16 8 N -0.69 -12.02 4.92 -53.68 -0.26 -12.28 16 9 C 0.54 9.97 7.58 -10.98 -0.08 9.89 16 10 O -0.54 -12.11 16.01 5.56 0.09 -12.02 16 11 C -0.14 -2.06 5.73 -91.78 -0.53 -2.58 16 12 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 13 C -0.16 -2.44 6.91 -89.03 -0.62 -3.05 16 14 H 0.13 2.30 8.14 -51.92 -0.42 1.88 16 15 C 0.07 0.94 7.44 37.93 0.28 1.22 16 16 O -0.37 -5.07 11.65 -35.23 -0.41 -5.48 16 17 C 0.07 0.85 7.44 37.92 0.28 1.13 16 18 C -0.17 -2.32 6.65 -89.04 -0.59 -2.91 16 19 H 0.13 2.02 7.82 -51.93 -0.41 1.61 16 20 C 0.16 3.81 4.88 -3.71 -0.02 3.80 16 21 N -0.58 -13.51 2.90 -164.52 -0.48 -13.98 16 22 C -0.25 -6.41 8.56 -15.06 -0.13 -6.54 16 23 H 0.07 1.70 6.25 -52.48 -0.33 1.37 16 24 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 25 N -0.90 -26.14 11.23 55.49 0.62 -25.52 16 26 Si 0.89 21.59 29.58 -169.99 -5.03 16.56 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 30 H 0.05 0.92 7.44 -51.93 -0.39 0.53 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.20 7.63 -51.93 -0.40 0.81 16 33 H 0.05 0.83 6.40 -51.93 -0.33 0.50 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.40 6.08 6.77 -40.82 -0.28 5.80 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 2.63 6.15 -51.93 -0.32 2.31 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -31.04 344.88 -9.22 -40.26 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.05 Total: 7.49 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.90 Total: -0.22 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.12 Total: -51.78 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.32 Total: -17.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.04 -9.22 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071747494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.093 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds