Wall clock time and date at job start Tue Mar 31 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.70311 * 2 1 4 4 C 1.53622 * 109.66184 * 120.59833 * 2 1 3 5 5 C 1.53040 * 109.23950 * 174.55109 * 4 2 1 6 6 C 1.53036 * 109.53729 * 298.50483 * 5 4 2 7 7 H 1.09008 * 109.52613 * 181.33380 * 6 5 4 8 8 N 1.46501 * 109.49871 * 301.41617 * 6 5 4 9 9 C 1.34782 * 119.99890 * 204.83282 * 8 6 5 10 10 O 1.21278 * 119.99891 * 0.02562 * 9 8 6 11 11 C 1.50701 * 120.00041 * 179.97438 * 9 8 6 12 12 H 1.09005 * 115.50831 * 325.37950 * 11 9 8 13 13 C 1.52999 * 117.43137 * 110.65286 * 11 9 8 14 14 H 1.09008 * 119.80389 * 355.37246 * 13 11 9 15 15 C 1.54475 * 118.06965 * 198.08684 * 13 11 9 16 16 O 1.44422 * 104.80418 * 273.17770 * 15 13 11 17 17 C 1.44428 * 105.27525 * 40.50770 * 16 15 13 18 18 C 1.52992 * 117.43514 * 180.02562 * 11 9 8 19 19 H 1.09005 * 119.80967 * 5.65213 * 18 11 9 20 20 C 1.53197 * 109.31135 * 61.37011 * 6 5 4 21 21 N 1.46923 * 108.77078 * 305.36101 * 20 6 5 22 22 C 1.36942 * 120.63090 * 233.58286 * 21 20 6 23 23 H 1.08005 * 119.99451 * 150.17111 * 22 21 20 24 24 C 1.38804 * 119.99915 * 330.17148 * 22 21 20 25 25 N 1.31622 * 120.00247 * 344.49914 * 24 22 21 26 26 Si 1.86810 * 119.99877 * 164.49868 * 24 22 21 27 27 H 1.48498 * 109.46844 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47269 * 120.00142 * 26 24 22 29 29 H 1.48497 * 109.46750 * 239.99912 * 26 24 22 30 30 H 1.09003 * 109.46988 * 180.35132 * 1 2 3 31 31 H 1.09000 * 109.47256 * 300.35038 * 1 2 3 32 32 H 1.09003 * 109.46858 * 60.35143 * 1 2 3 33 33 H 1.08994 * 109.63925 * 54.55502 * 4 2 1 34 34 H 1.09003 * 109.45936 * 294.42801 * 4 2 1 35 35 H 1.09004 * 109.45814 * 178.49037 * 5 4 2 36 36 H 1.08999 * 109.46493 * 58.52573 * 5 4 2 37 37 H 0.96991 * 119.99934 * 24.83986 * 8 6 5 38 38 H 1.08995 * 110.37148 * 154.34385 * 15 13 11 39 39 H 1.09005 * 110.37047 * 32.00692 * 15 13 11 40 40 H 1.09001 * 110.36975 * 200.65749 * 17 16 15 41 41 H 1.09003 * 110.46582 * 78.36730 * 17 16 15 42 42 H 1.09002 * 109.58287 * 185.57939 * 20 6 5 43 43 H 1.08995 * 109.70543 * 65.22031 * 20 6 5 44 44 H 0.97001 * 120.00021 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7364 1.2452 5 6 3.5711 -0.8498 1.1676 6 6 3.9615 -1.6628 -0.0689 7 1 5.0460 -1.7636 -0.1111 8 7 3.3494 -2.9917 0.0064 9 6 3.9065 -4.0284 -0.6505 10 8 4.9148 -3.8612 -1.3034 11 6 3.2773 -5.3955 -0.5726 12 1 2.8107 -5.6439 0.3807 13 6 2.6200 -5.9423 -1.8415 14 1 2.5543 -5.3154 -2.7308 15 6 1.6196 -7.1103 -1.6964 16 8 2.4354 -8.3015 -1.7328 17 6 3.6083 -7.9834 -0.9524 18 6 3.9587 -6.5299 -1.3403 19 1 4.9123 -6.3516 -1.8373 20 6 3.4657 -0.9419 -1.3264 21 7 2.0226 -0.6996 -1.1945 22 6 1.1537 -1.1126 -2.1691 23 1 0.1409 -1.3837 -1.9099 24 6 1.5748 -1.1827 -3.4899 25 7 2.6832 -0.5772 -3.8604 26 14 0.5683 -2.1366 -4.7416 27 1 -0.6239 -2.7209 -4.0764 28 1 0.1317 -1.2216 -5.8266 29 1 1.3974 -3.2261 -5.3166 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3634 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8932 33 1 1.6096 -1.7338 1.2889 34 1 1.7688 -0.1778 2.1390 35 1 3.9442 -1.3482 2.0624 36 1 4.0065 0.1470 1.0990 37 1 2.5432 -3.1254 0.5288 38 1 0.9123 -7.1093 -2.5258 39 1 1.0910 -7.0413 -0.7456 40 1 4.4287 -8.6532 -1.2103 41 1 3.3866 -8.0486 0.1128 42 1 3.6532 -1.5637 -2.2019 43 1 3.9875 0.0088 -1.4349 44 1 2.9772 -0.6260 -4.7835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071747494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:48 Heat of formation + Delta-G solvation = -49.280260 kcal Electronic energy + Delta-G solvation = -25349.072567 eV Core-core repulsion = 21881.042265 eV Total energy + Delta-G solvation = -3468.030303 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76490 -40.48518 -39.02112 -35.85234 -35.51754 -34.48830 -32.21454 -31.73138 -29.70568 -28.08112 -27.25952 -26.44924 -23.94453 -23.53469 -22.07241 -21.72912 -21.27639 -20.38126 -18.80737 -18.20211 -17.23733 -17.05633 -16.77067 -16.17964 -16.09802 -15.88271 -15.65181 -15.43780 -15.03432 -14.74702 -14.46131 -14.13141 -13.94168 -13.66603 -13.55511 -13.02337 -12.89523 -12.84746 -12.64258 -12.58628 -12.52699 -12.41334 -12.11448 -12.05386 -11.58161 -11.43966 -11.34793 -11.22263 -11.05104 -10.83385 -10.65041 -10.53900 -9.95255 -8.57176 -7.82762 -5.28424 1.38208 1.41387 1.43485 1.49831 2.13865 2.49060 2.60910 3.02145 3.33312 3.46130 3.53839 3.62963 3.78136 3.84942 4.01615 4.05873 4.10585 4.14708 4.20279 4.39524 4.49340 4.64355 4.68229 4.74198 4.76032 4.79276 4.83059 4.95234 4.96494 5.03852 5.05243 5.09736 5.12754 5.27821 5.33169 5.57931 5.61920 5.69301 5.69801 5.73251 5.74556 6.43896 6.68030 7.18158 7.36069 7.92655 8.43888 9.22372 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.006551 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.572877 B = 4273.283701 C = 5374.746401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.011 0.989 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.062 0.938 8 N -0.683 5.683 9 C 0.532 3.468 10 O -0.594 6.594 11 C -0.131 4.131 12 H 0.161 0.839 13 C -0.180 4.180 14 H 0.090 0.910 15 C 0.083 3.917 16 O -0.390 6.390 17 C 0.081 3.919 18 C -0.165 4.165 19 H 0.110 0.890 20 C 0.172 3.828 21 N -0.593 5.593 22 C -0.230 4.230 23 H 0.078 0.922 24 C -0.056 4.056 25 N -0.939 5.939 26 Si 0.946 3.054 27 H -0.254 1.254 28 H -0.298 1.298 29 H -0.305 1.305 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.044 0.956 43 H -0.007 1.007 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 -9.984 14.677 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.029 0.971 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.080 0.920 8 N -0.333 5.333 9 C 0.319 3.681 10 O -0.475 6.475 11 C -0.152 4.152 12 H 0.179 0.821 13 C -0.199 4.199 14 H 0.108 0.892 15 C 0.007 3.993 16 O -0.309 6.309 17 C 0.005 3.995 18 C -0.184 4.184 19 H 0.128 0.872 20 C 0.045 3.955 21 N -0.317 5.317 22 C -0.361 4.361 23 H 0.096 0.904 24 C -0.251 4.251 25 N -0.586 5.586 26 Si 0.776 3.224 27 H -0.177 1.177 28 H -0.225 1.225 29 H -0.232 1.232 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.011 0.989 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.944 -10.038 13.988 17.326 hybrid contribution -0.122 0.507 -1.612 1.695 sum -2.066 -9.531 12.375 15.756 Atomic orbital electron populations 1.21714 0.94576 1.01477 1.00739 1.20886 0.94238 0.93085 0.87108 0.97096 1.22020 0.94518 1.01168 0.97962 1.21659 0.97441 0.99791 0.95864 1.21471 0.96189 0.82559 0.97625 0.92013 1.45640 1.29631 1.07602 1.50389 1.20042 0.83533 0.86387 0.78149 1.90659 1.27978 1.85821 1.43048 1.22364 1.03023 0.90769 0.99030 0.82138 1.24134 0.96565 1.01704 0.97546 0.89218 1.22992 0.91869 0.80332 1.04139 1.89158 1.32762 1.35331 1.73646 1.23072 0.88562 0.91195 0.96648 1.24222 0.97215 0.93408 1.03576 0.87186 1.20822 0.84371 0.95102 0.95210 1.44268 1.02004 1.65486 1.19904 1.19444 0.95473 1.35059 0.86135 0.90401 1.25759 0.98960 1.01306 0.99075 1.70178 1.26274 1.46170 1.15976 0.85505 0.78942 0.78138 0.79863 1.17733 1.22543 1.23248 0.92731 0.90633 0.94799 0.91478 0.89185 0.89421 0.91134 0.75307 0.87854 0.88747 0.86777 0.88969 0.93797 0.98897 0.95040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 7.96 71.98 0.57 -3.57 16 2 C 0.15 5.56 3.51 45.12 0.16 5.72 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C -0.12 -3.12 5.23 30.82 0.16 -2.96 16 5 C -0.11 -3.04 5.58 30.62 0.17 -2.87 16 6 C 0.13 4.76 2.81 45.07 0.13 4.89 16 7 H 0.06 2.46 7.58 -2.38 -0.02 2.45 16 8 N -0.68 -22.82 4.92 -442.15 -2.17 -24.99 16 9 C 0.53 19.57 7.58 87.66 0.66 20.23 16 10 O -0.59 -27.72 16.01 -3.02 -0.05 -27.77 16 11 C -0.13 -3.56 5.73 -11.54 -0.07 -3.63 16 12 H 0.16 2.94 8.14 -2.38 -0.02 2.92 16 13 C -0.18 -5.32 6.91 -9.76 -0.07 -5.38 16 14 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 15 C 0.08 1.88 7.44 72.48 0.54 2.42 16 16 O -0.39 -9.50 11.65 -148.98 -1.74 -11.24 16 17 C 0.08 1.60 7.44 72.48 0.54 2.14 16 18 C -0.17 -4.45 6.65 -9.77 -0.06 -4.51 16 19 H 0.11 3.47 7.82 -2.38 -0.02 3.45 16 20 C 0.17 8.45 4.88 86.36 0.42 8.87 16 21 N -0.59 -27.72 2.90 -674.42 -1.95 -29.67 16 22 C -0.23 -11.99 8.56 84.03 0.72 -11.27 16 23 H 0.08 3.86 6.25 -2.91 -0.02 3.84 16 24 C -0.06 -3.19 4.94 84.86 0.42 -2.78 16 25 N -0.94 -58.10 11.23 21.65 0.24 -57.86 16 26 Si 0.95 45.96 29.58 68.60 2.03 47.98 16 27 H -0.25 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 29 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 30 H 0.05 1.74 7.44 -2.39 -0.02 1.72 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.03 1.26 7.63 -2.39 -0.02 1.24 16 33 H 0.07 1.66 6.40 -2.39 -0.02 1.65 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.41 11.25 6.77 -92.72 -0.63 10.63 16 38 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 2.61 6.15 -2.39 -0.01 2.59 16 43 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.98 344.88 1.02 -72.96 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.37 Total: 23.29 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.29 Total: 7.29 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -3.88 Total: -112.52 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.78 Total: -39.01 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.98 1.02 -72.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071747494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.675 kcal (2) G-P(sol) polarization free energy of solvation -73.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds