Wall clock time and date at job start Tue Mar 31 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.27548 * 2 1 4 4 C 1.54947 * 110.39204 * 237.84749 * 2 1 3 5 5 C 1.55307 * 100.93909 * 204.60090 * 4 2 1 6 6 H 1.09001 * 111.01859 * 275.86180 * 5 4 2 7 7 C 1.50701 * 110.84424 * 152.33066 * 5 4 2 8 8 O 1.21277 * 120.00139 * 5.70458 * 7 5 4 9 9 N 1.34778 * 119.99865 * 185.71416 * 7 5 4 10 10 C 1.47849 * 134.36496 * 179.97438 * 9 7 5 11 11 C 1.52561 * 85.66453 * 156.34941 * 10 9 7 12 12 C 1.47852 * 134.36207 * 359.96943 * 9 7 5 13 13 C 1.53855 * 115.93150 * 265.03782 * 11 10 9 14 14 C 1.55152 * 101.41230 * 196.34164 * 13 11 10 15 15 N 1.47545 * 105.00903 * 35.63763 * 14 13 11 16 16 C 1.36936 * 125.65666 * 156.35558 * 15 14 13 17 17 H 1.08005 * 119.99805 * 179.69785 * 16 15 14 18 18 C 1.38815 * 120.00258 * 359.69070 * 16 15 14 19 19 N 1.31617 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00004 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47040 * 90.00221 * 20 18 16 22 22 H 1.48498 * 109.46875 * 210.00330 * 20 18 16 23 23 H 1.48502 * 109.47067 * 330.00067 * 20 18 16 24 24 C 1.47366 * 108.68205 * 336.09328 * 15 14 13 25 25 C 1.54374 * 102.25349 * 34.13574 * 5 4 2 26 26 O 1.43235 * 107.59163 * 338.64361 * 25 5 4 27 27 H 1.09003 * 109.47007 * 299.36635 * 1 2 3 28 28 H 1.09001 * 109.46830 * 59.36171 * 1 2 3 29 29 H 1.08999 * 109.47286 * 179.36236 * 1 2 3 30 30 H 1.08996 * 111.12011 * 86.68466 * 4 2 1 31 31 H 1.08996 * 111.12560 * 322.52233 * 4 2 1 32 32 H 1.09000 * 113.83986 * 42.16167 * 10 9 7 33 33 H 1.09004 * 113.95567 * 270.54731 * 10 9 7 34 34 H 1.08999 * 113.84761 * 89.46650 * 12 9 7 35 35 H 1.09007 * 113.84172 * 317.83101 * 12 9 7 36 36 H 1.09003 * 111.03772 * 314.37571 * 13 11 10 37 37 H 1.08997 * 111.04286 * 78.30935 * 13 11 10 38 38 H 1.09001 * 110.33448 * 276.76049 * 14 13 11 39 39 H 1.09001 * 110.33629 * 154.52156 * 14 13 11 40 40 H 0.97003 * 119.99611 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.98227 * 121.37686 * 24 15 14 42 42 H 1.08997 * 109.97919 * 242.67276 * 24 15 14 43 43 H 1.09000 * 109.83157 * 98.15820 * 25 5 4 44 44 H 1.09008 * 109.82782 * 219.03635 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7729 -1.2296 5 6 3.4722 -1.2003 -0.7167 6 1 4.2014 -0.4033 -0.8624 7 6 3.9261 -2.4691 -1.3912 8 8 3.2638 -2.9508 -2.2858 9 7 5.0681 -3.0688 -1.0002 10 6 5.7944 -4.2851 -1.4233 11 6 7.0321 -3.6076 -0.8433 12 6 6.0937 -2.7722 0.0226 13 6 7.9010 -2.8243 -1.8427 14 6 9.2195 -2.6615 -1.0413 15 7 9.3561 -3.9131 -0.2720 16 6 10.5292 -4.4303 0.2092 17 1 10.5229 -5.3548 0.7676 18 6 11.7265 -3.7665 -0.0208 19 7 11.7341 -2.6398 -0.7009 20 14 13.3268 -4.4725 0.6351 21 1 13.9210 -5.3785 -0.3803 22 1 14.2735 -3.3660 0.9258 23 1 13.0578 -5.2342 1.8812 24 6 8.0199 -4.5109 -0.1020 25 6 3.2124 -1.4394 0.7861 26 8 2.0285 -0.7157 1.1414 27 1 -0.3633 0.5040 0.8956 28 1 -0.3633 0.5237 -0.8842 29 1 -0.3634 -1.0276 -0.0114 30 1 2.1517 -0.1204 -2.0988 31 1 1.4505 -1.6422 -1.4502 32 1 5.8326 -4.4219 -2.5040 33 1 5.4952 -5.1873 -0.8898 34 1 5.8843 -3.2130 0.9973 35 1 6.3675 -1.7187 0.0796 36 1 8.0652 -3.4001 -2.7535 37 1 7.4587 -1.8543 -2.0694 38 1 9.1499 -1.8081 -0.3668 39 1 10.0633 -2.5406 -1.7207 40 1 12.5707 -2.1757 -0.8613 41 1 8.0028 -5.5127 -0.5310 42 1 7.7632 -4.5541 0.9564 43 1 3.0649 -2.5034 0.9711 44 1 4.0585 -1.0766 1.3699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072872445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:57 Heat of formation + Delta-G solvation = -18.322301 kcal Electronic energy + Delta-G solvation = -24287.242766 eV Core-core repulsion = 20820.554901 eV Total energy + Delta-G solvation = -3466.687865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88484 -39.71834 -37.99809 -35.66409 -32.65207 -32.41225 -31.90371 -29.52108 -28.63840 -26.58225 -26.11287 -25.68647 -23.95131 -22.53704 -21.44120 -20.40993 -19.03450 -18.41236 -17.47763 -16.89570 -16.61112 -16.24532 -15.51729 -15.39814 -14.89517 -14.57380 -14.36016 -13.99618 -13.76300 -13.48005 -13.22527 -12.77598 -12.65144 -12.44840 -12.24532 -12.12708 -12.04715 -11.74481 -11.47179 -11.31768 -11.20958 -11.13602 -10.99827 -10.82551 -10.51233 -10.14807 -10.03666 -9.96123 -9.83946 -9.70897 -9.52629 -8.70703 -8.62300 -6.89986 -5.70575 -3.12382 2.54985 2.76323 3.37130 3.42399 3.44123 3.49928 4.05558 4.26285 4.44070 4.56791 4.59379 4.75176 4.81265 4.90589 4.99546 5.07900 5.13969 5.34005 5.36759 5.43812 5.45533 5.46495 5.54814 5.58474 5.60494 5.69078 5.74235 5.76347 5.81628 5.88771 5.96081 6.10516 6.22912 6.44312 6.50463 6.63134 6.68393 6.73198 7.42870 7.57049 7.71025 7.79564 8.10131 8.29872 9.16384 9.77073 10.41323 11.33474 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.003103 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.505725 B = 9021.935067 C = 9274.974876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.073 0.927 4 C -0.130 4.130 5 C -0.143 4.143 6 H 0.111 0.889 7 C 0.545 3.455 8 O -0.545 6.545 9 N -0.638 5.638 10 C 0.122 3.878 11 C -0.102 4.102 12 C 0.116 3.884 13 C -0.119 4.119 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.151 3.849 25 C 0.067 3.933 26 O -0.377 6.377 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.013 0.987 39 H 0.107 0.893 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.027 0.973 43 H 0.071 0.929 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.601 4.587 0.586 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.091 0.909 4 C -0.168 4.168 5 C -0.164 4.164 6 H 0.129 0.871 7 C 0.334 3.666 8 O -0.423 6.423 9 N -0.373 5.373 10 C 0.000 4.000 11 C -0.103 4.103 12 C -0.006 4.006 13 C -0.158 4.158 14 C 0.029 3.971 15 N -0.330 5.330 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.025 3.975 25 C -0.010 4.010 26 O -0.297 6.297 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.001 4.480 0.264 18.552 hybrid contribution 1.031 -0.298 0.239 1.099 sum -16.970 4.183 0.503 17.485 Atomic orbital electron populations 1.21878 0.93470 1.02993 1.02434 1.23026 0.95157 0.95571 0.84571 0.90898 1.23217 0.93893 1.01478 0.98194 1.22844 0.99787 0.97227 0.96562 0.87074 1.19787 0.78656 0.85054 0.83075 1.90689 1.53957 1.66292 1.31345 1.50197 1.21889 1.27276 1.37903 1.23069 0.87422 0.88287 1.01246 1.22467 0.93473 0.97061 0.97324 1.23228 0.83646 1.01421 0.92325 1.22703 0.97650 0.98075 0.97324 1.21985 0.93909 0.87323 0.93846 1.44583 1.00774 1.23957 1.63686 1.19071 0.83307 1.04889 1.27861 0.90423 1.24787 0.97814 0.97212 1.00806 1.69789 1.25154 1.17298 1.44845 0.86071 0.83255 0.77780 0.78378 1.21583 1.21664 1.20724 1.20992 0.85691 0.94544 0.96307 1.23010 0.88438 0.97208 0.92340 1.88426 1.42262 1.64971 1.34054 0.91785 0.91093 0.91821 0.89397 0.88942 0.89988 0.89691 0.89313 0.89761 0.91505 0.92319 0.96942 0.87556 0.93697 0.95103 0.95553 0.91056 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.62 37.16 0.36 -0.82 16 2 C 0.07 0.70 4.07 -25.70 -0.10 0.59 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -1.33 5.65 -24.48 -0.14 -1.47 16 5 C -0.14 -1.58 3.20 -89.83 -0.29 -1.87 16 6 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 7 C 0.55 7.78 7.25 -10.98 -0.08 7.70 16 8 O -0.54 -9.58 16.49 5.56 0.09 -9.49 16 9 N -0.64 -8.73 3.60 -185.63 -0.67 -9.40 16 10 C 0.12 1.70 8.15 -3.53 -0.03 1.67 16 11 C -0.10 -1.59 0.97 -154.70 -0.15 -1.74 16 12 C 0.12 1.51 7.33 -3.51 -0.03 1.48 16 13 C -0.12 -2.10 6.42 -25.15 -0.16 -2.26 16 14 C 0.15 3.51 5.90 -2.33 -0.01 3.49 16 15 N -0.60 -14.55 3.41 -170.35 -0.58 -15.13 16 16 C -0.22 -5.96 10.28 -15.06 -0.15 -6.11 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.05 10.09 55.49 0.56 -25.49 16 20 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.15 2.85 6.75 -3.56 -0.02 2.82 16 25 C 0.07 0.72 6.82 37.88 0.26 0.98 16 26 O -0.38 -4.43 11.04 -35.23 -0.39 -4.82 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.08 7.38 -51.93 -0.38 0.70 16 32 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.03 8.00 -51.93 -0.42 0.61 16 35 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 2.78 5.89 -51.93 -0.31 2.48 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 42 H 0.03 0.48 7.86 -51.93 -0.41 0.08 16 43 H 0.07 0.81 7.81 -51.93 -0.41 0.40 16 44 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 LS Contribution 350.29 15.07 5.28 5.28 Total: -1.00 -31.14 350.29 -8.75 -39.89 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.37 Total: -1.38 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.65 Total: 4.08 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.69 Total: -50.01 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.30 Total: -14.31 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.14 -8.75 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072872445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.571 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds