Wall clock time and date at job start Tue Mar 31 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.27548 * 2 1 4 4 C 1.54947 * 110.39204 * 237.84749 * 2 1 3 5 5 C 1.55307 * 100.93909 * 204.60090 * 4 2 1 6 6 H 1.09001 * 111.01859 * 275.86180 * 5 4 2 7 7 C 1.50701 * 110.84424 * 152.33066 * 5 4 2 8 8 O 1.21277 * 120.00139 * 5.70458 * 7 5 4 9 9 N 1.34778 * 119.99865 * 185.71416 * 7 5 4 10 10 C 1.47849 * 134.36496 * 179.97438 * 9 7 5 11 11 C 1.52561 * 85.66453 * 156.34941 * 10 9 7 12 12 C 1.47852 * 134.36207 * 359.96943 * 9 7 5 13 13 C 1.53855 * 115.93150 * 265.03782 * 11 10 9 14 14 C 1.55152 * 101.41230 * 196.34164 * 13 11 10 15 15 N 1.47545 * 105.00903 * 35.63763 * 14 13 11 16 16 C 1.36936 * 125.65666 * 156.35558 * 15 14 13 17 17 H 1.08005 * 119.99805 * 179.69785 * 16 15 14 18 18 C 1.38815 * 120.00258 * 359.69070 * 16 15 14 19 19 N 1.31617 * 119.99770 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00004 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47040 * 90.00221 * 20 18 16 22 22 H 1.48498 * 109.46875 * 210.00330 * 20 18 16 23 23 H 1.48502 * 109.47067 * 330.00067 * 20 18 16 24 24 C 1.47366 * 108.68205 * 336.09328 * 15 14 13 25 25 C 1.54374 * 102.25349 * 34.13574 * 5 4 2 26 26 O 1.43235 * 107.59163 * 338.64361 * 25 5 4 27 27 H 1.09003 * 109.47007 * 299.36635 * 1 2 3 28 28 H 1.09001 * 109.46830 * 59.36171 * 1 2 3 29 29 H 1.08999 * 109.47286 * 179.36236 * 1 2 3 30 30 H 1.08996 * 111.12011 * 86.68466 * 4 2 1 31 31 H 1.08996 * 111.12560 * 322.52233 * 4 2 1 32 32 H 1.09000 * 113.83986 * 42.16167 * 10 9 7 33 33 H 1.09004 * 113.95567 * 270.54731 * 10 9 7 34 34 H 1.08999 * 113.84761 * 89.46650 * 12 9 7 35 35 H 1.09007 * 113.84172 * 317.83101 * 12 9 7 36 36 H 1.09003 * 111.03772 * 314.37571 * 13 11 10 37 37 H 1.08997 * 111.04286 * 78.30935 * 13 11 10 38 38 H 1.09001 * 110.33448 * 276.76049 * 14 13 11 39 39 H 1.09001 * 110.33629 * 154.52156 * 14 13 11 40 40 H 0.97003 * 119.99611 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.98227 * 121.37686 * 24 15 14 42 42 H 1.08997 * 109.97919 * 242.67276 * 24 15 14 43 43 H 1.09000 * 109.83157 * 98.15820 * 25 5 4 44 44 H 1.09008 * 109.82782 * 219.03635 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7729 -1.2296 5 6 3.4722 -1.2003 -0.7167 6 1 4.2014 -0.4033 -0.8624 7 6 3.9261 -2.4691 -1.3912 8 8 3.2638 -2.9508 -2.2858 9 7 5.0681 -3.0688 -1.0002 10 6 5.7944 -4.2851 -1.4233 11 6 7.0321 -3.6076 -0.8433 12 6 6.0937 -2.7722 0.0226 13 6 7.9010 -2.8243 -1.8427 14 6 9.2195 -2.6615 -1.0413 15 7 9.3561 -3.9131 -0.2720 16 6 10.5292 -4.4303 0.2092 17 1 10.5229 -5.3548 0.7676 18 6 11.7265 -3.7665 -0.0208 19 7 11.7341 -2.6398 -0.7009 20 14 13.3268 -4.4725 0.6351 21 1 13.9210 -5.3785 -0.3803 22 1 14.2735 -3.3660 0.9258 23 1 13.0578 -5.2342 1.8812 24 6 8.0199 -4.5109 -0.1020 25 6 3.2124 -1.4394 0.7861 26 8 2.0285 -0.7157 1.1414 27 1 -0.3633 0.5040 0.8956 28 1 -0.3633 0.5237 -0.8842 29 1 -0.3634 -1.0276 -0.0114 30 1 2.1517 -0.1204 -2.0988 31 1 1.4505 -1.6422 -1.4502 32 1 5.8326 -4.4219 -2.5040 33 1 5.4952 -5.1873 -0.8898 34 1 5.8843 -3.2130 0.9973 35 1 6.3675 -1.7187 0.0796 36 1 8.0652 -3.4001 -2.7535 37 1 7.4587 -1.8543 -2.0694 38 1 9.1499 -1.8081 -0.3668 39 1 10.0633 -2.5406 -1.7207 40 1 12.5707 -2.1757 -0.8613 41 1 8.0028 -5.5127 -0.5310 42 1 7.7632 -4.5541 0.9564 43 1 3.0649 -2.5034 0.9711 44 1 4.0585 -1.0766 1.3699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072872445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:57 Heat of formation + Delta-G solvation = -37.902087 kcal Electronic energy + Delta-G solvation = -24288.091809 eV Core-core repulsion = 20820.554901 eV Total energy + Delta-G solvation = -3467.536908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.00308 -40.70910 -39.15482 -37.24975 -34.12403 -33.44306 -32.88522 -31.13072 -30.08380 -27.65786 -27.35549 -26.80864 -25.54876 -23.57229 -22.19365 -22.16790 -20.17992 -19.69875 -18.64632 -18.34171 -17.65670 -17.37851 -16.84229 -16.55803 -16.28566 -15.84552 -15.56072 -15.37370 -14.89179 -14.56393 -14.32947 -14.02656 -13.77107 -13.62057 -13.41047 -13.36414 -13.30337 -12.87788 -12.85150 -12.76108 -12.49895 -12.29206 -12.10120 -12.01039 -11.89994 -11.82399 -11.76852 -11.50949 -11.33336 -10.87122 -10.70576 -10.51058 -9.76176 -8.84132 -7.74070 -5.17134 1.47082 1.50059 1.50844 1.59351 1.69976 2.52594 2.72235 3.16858 3.28224 3.37930 3.47618 3.64398 3.72666 3.82751 3.97957 4.02098 4.09659 4.19798 4.21595 4.36889 4.44035 4.53572 4.59639 4.63671 4.64178 4.70304 4.76921 4.79222 4.85883 4.87490 4.91908 4.98399 5.08909 5.15783 5.19157 5.21255 5.29317 5.51395 5.66224 5.85933 5.97570 6.34599 6.62051 7.00356 7.14848 7.82467 8.45789 9.27874 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.003103 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.505725 B = 9021.935067 C = 9274.974876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 H 0.090 0.910 4 C -0.128 4.128 5 C -0.138 4.138 6 H 0.130 0.870 7 C 0.543 3.457 8 O -0.583 6.583 9 N -0.636 5.636 10 C 0.125 3.875 11 C -0.097 4.097 12 C 0.125 3.875 13 C -0.103 4.103 14 C 0.159 3.841 15 N -0.626 5.626 16 C -0.233 4.233 17 H 0.082 0.918 18 C -0.068 4.068 19 N -0.949 5.949 20 Si 0.976 3.024 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.270 1.270 24 C 0.149 3.851 25 C 0.069 3.931 26 O -0.396 6.396 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.076 0.924 38 H -0.006 1.006 39 H 0.068 0.932 40 H 0.245 0.755 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.862 4.812 1.419 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 H 0.108 0.892 4 C -0.166 4.166 5 C -0.160 4.160 6 H 0.148 0.852 7 C 0.334 3.666 8 O -0.463 6.463 9 N -0.370 5.370 10 C 0.003 3.997 11 C -0.099 4.099 12 C 0.003 3.997 13 C -0.142 4.142 14 C 0.034 3.966 15 N -0.353 5.353 16 C -0.362 4.362 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.599 5.599 20 Si 0.805 3.195 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.195 1.195 24 C 0.023 3.977 25 C -0.008 4.008 26 O -0.316 6.316 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.012 0.988 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.286 4.688 1.116 19.879 hybrid contribution 1.400 -0.404 -0.030 1.457 sum -17.886 4.284 1.086 18.424 Atomic orbital electron populations 1.21900 0.92553 1.02699 1.03532 1.23200 0.95988 0.95903 0.83361 0.89233 1.23205 0.93151 1.01104 0.99149 1.22877 1.00550 0.95964 0.96567 0.85238 1.20289 0.78172 0.85614 0.82530 1.90675 1.55075 1.67470 1.33127 1.50184 1.21861 1.27075 1.37869 1.23073 0.86267 0.89134 1.01244 1.22318 0.93276 0.97086 0.97180 1.23292 0.81983 1.01800 0.92576 1.22472 0.95484 0.99382 0.96848 1.21716 0.95176 0.86621 0.93127 1.44872 1.02103 1.24520 1.63777 1.19444 0.84600 1.04914 1.27227 0.89978 1.25572 1.00818 0.97863 1.01755 1.70045 1.25193 1.18478 1.46219 0.85105 0.79476 0.76839 0.78083 1.21564 1.22296 1.19463 1.21153 0.84057 0.95036 0.97427 1.23022 0.88751 0.96871 0.92118 1.88410 1.42676 1.65354 1.35186 0.91384 0.89294 0.92842 0.88119 0.90859 0.90440 0.87760 0.87152 0.88703 0.91977 0.90533 0.98773 0.91441 0.94484 0.94799 0.94318 0.91887 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.62 71.98 0.69 -1.38 16 2 C 0.07 1.20 4.07 31.26 0.13 1.32 16 3 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.13 -2.39 5.65 32.05 0.18 -2.20 16 5 C -0.14 -2.74 3.20 -10.28 -0.03 -2.78 16 6 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 7 C 0.54 14.47 7.25 87.66 0.64 15.10 16 8 O -0.58 -19.90 16.49 -3.02 -0.05 -19.95 16 9 N -0.64 -15.81 3.60 -859.59 -3.09 -18.90 16 10 C 0.13 3.19 8.15 85.97 0.70 3.89 16 11 C -0.10 -2.83 0.97 -52.10 -0.05 -2.88 16 12 C 0.13 2.87 7.33 85.98 0.63 3.50 16 13 C -0.10 -3.56 6.42 31.62 0.20 -3.35 16 14 C 0.16 7.31 5.90 86.92 0.51 7.83 16 15 N -0.63 -30.13 3.41 -692.86 -2.36 -32.49 16 16 C -0.23 -12.46 10.28 84.03 0.86 -11.59 16 17 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 18 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 19 N -0.95 -55.03 10.09 21.65 0.22 -54.82 16 20 Si 0.98 44.49 29.55 68.60 2.03 46.52 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.15 5.37 6.75 86.22 0.58 5.95 16 25 C 0.07 1.33 6.82 72.45 0.49 1.82 16 26 O -0.40 -8.49 11.04 -148.98 -1.64 -10.13 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.66 7.38 -2.39 -0.02 1.64 16 32 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 33 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.11 2.13 8.00 -2.39 -0.02 2.11 16 35 H 0.09 2.04 8.12 -2.38 -0.02 2.02 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.35 8.06 -2.39 -0.02 2.34 16 38 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.07 3.66 5.89 -2.39 -0.01 3.65 16 40 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 42 H 0.04 1.32 7.86 -2.39 -0.02 1.30 16 43 H 0.06 1.30 7.81 -2.39 -0.02 1.28 16 44 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -68.12 350.29 2.07 -66.05 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.97 Total: 11.76 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.01 Total: 11.97 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -5.23 Total: -106.20 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.69 Total: -30.09 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.12 2.07 -66.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072872445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -68.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds