Wall clock time and date at job start Tue Mar 31 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.33351 * 2 1 4 4 C 1.54478 * 110.37641 * 122.25492 * 2 1 3 5 5 C 1.54504 * 104.06794 * 142.91650 * 4 2 1 6 6 H 1.09003 * 110.50985 * 118.77649 * 5 4 2 7 7 C 1.50695 * 110.51376 * 241.35710 * 5 4 2 8 8 O 1.21276 * 119.99879 * 0.02562 * 7 5 4 9 9 N 1.34779 * 119.99937 * 179.97438 * 7 5 4 10 10 C 1.47848 * 134.36238 * 180.02562 * 9 7 5 11 11 C 1.52561 * 85.66530 * 156.38915 * 10 9 7 12 12 C 1.47844 * 134.36551 * 0.02814 * 9 7 5 13 13 C 1.53861 * 115.93327 * 265.04106 * 11 10 9 14 14 C 1.55403 * 101.30248 * 196.13902 * 13 11 10 15 15 N 1.47541 * 104.88228 * 35.97247 * 14 13 11 16 16 C 1.36941 * 125.65134 * 155.98927 * 15 14 13 17 17 H 1.08003 * 119.99202 * 190.37625 * 16 15 14 18 18 C 1.38814 * 120.00496 * 10.37170 * 16 15 14 19 19 N 1.31613 * 119.99765 * 9.04996 * 18 16 15 20 20 Si 1.86793 * 119.99953 * 189.05094 * 18 16 15 21 21 H 1.48502 * 109.47373 * 84.98993 * 20 18 16 22 22 H 1.48500 * 109.47289 * 324.99378 * 20 18 16 23 23 H 1.48496 * 109.47399 * 204.99122 * 20 18 16 24 24 C 1.47358 * 108.68306 * 335.71847 * 15 14 13 25 25 C 1.54488 * 104.06062 * 0.02562 * 5 4 2 26 26 O 1.44425 * 104.80346 * 336.01962 * 25 5 4 27 27 H 1.09007 * 109.46951 * 297.74540 * 1 2 3 28 28 H 1.08996 * 109.47499 * 57.74576 * 1 2 3 29 29 H 1.09002 * 109.47298 * 177.74891 * 1 2 3 30 30 H 1.09002 * 110.50947 * 24.26886 * 4 2 1 31 31 H 1.09003 * 110.62685 * 261.62555 * 4 2 1 32 32 H 1.09000 * 113.84681 * 42.19803 * 10 9 7 33 33 H 1.09003 * 113.95486 * 270.58433 * 10 9 7 34 34 H 1.08998 * 113.84555 * 89.42570 * 12 9 7 35 35 H 1.09002 * 113.84414 * 317.79248 * 12 9 7 36 36 H 1.09003 * 111.03238 * 314.36840 * 13 11 10 37 37 H 1.09001 * 111.03750 * 78.29622 * 13 11 10 38 38 H 1.08998 * 110.48051 * 277.08333 * 14 13 11 39 39 H 1.09000 * 110.30081 * 154.76926 * 14 13 11 40 40 H 0.96997 * 119.99869 * 179.97438 * 19 18 16 41 41 H 1.09008 * 109.97692 * 121.64300 * 24 15 14 42 42 H 1.08997 * 109.98487 * 242.93394 * 24 15 14 43 43 H 1.09000 * 110.36846 * 94.84832 * 25 5 4 44 44 H 1.08990 * 110.37073 * 217.18653 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7728 1.2246 5 6 3.3194 -1.5028 0.6880 6 1 4.2112 -1.1745 1.2219 7 6 3.1525 -2.9956 0.8090 8 8 2.1333 -3.4557 1.2782 9 7 4.1356 -3.8193 0.3947 10 6 4.3091 -5.2872 0.3621 11 6 5.3090 -5.0279 -0.7606 12 6 5.4700 -3.6151 -0.2081 13 6 4.7548 -5.1305 -2.1923 14 6 6.0660 -5.2388 -3.0194 15 7 6.9791 -6.0371 -2.1793 16 6 8.0398 -6.7755 -2.6321 17 1 8.5468 -7.4573 -1.9654 18 6 8.4632 -6.6478 -3.9479 19 7 7.9676 -5.6954 -4.7092 20 14 9.7365 -7.8275 -4.6380 21 1 9.0601 -9.0568 -5.1244 22 1 10.7080 -8.1855 -3.5735 23 1 10.4536 -7.1784 -5.7647 24 6 6.5643 -5.9027 -0.7717 25 6 3.3901 -1.0841 -0.7973 26 8 2.0354 -0.7225 -1.1437 27 1 -0.3633 0.4785 0.9096 28 1 -0.3634 0.5484 -0.8690 29 1 -0.3634 -1.0269 -0.0404 30 1 1.3283 -1.4917 1.5775 31 1 2.3408 -0.0838 2.0239 32 1 3.4189 -5.8292 0.0429 33 1 4.7582 -5.7000 1.2654 34 1 6.2730 -3.5165 0.5223 35 1 5.4930 -2.8418 -0.9760 36 1 4.1384 -6.0217 -2.3102 37 1 4.1978 -4.2331 -2.4615 38 1 6.4856 -4.2492 -3.2003 39 1 5.8764 -5.7492 -3.9636 40 1 8.2637 -5.6059 -5.6285 41 1 6.3381 -6.8842 -0.3548 42 1 7.3560 -5.4258 -0.1939 43 1 4.0541 -0.2284 -0.9191 44 1 3.7287 -1.9187 -1.4111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072872446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:01 Heat of formation + Delta-G solvation = -18.457127 kcal Electronic energy + Delta-G solvation = -24564.462440 eV Core-core repulsion = 21097.768729 eV Total energy + Delta-G solvation = -3466.693711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89701 -39.64569 -37.85045 -35.62950 -32.52234 -32.34407 -31.84482 -29.50052 -28.61759 -26.54009 -26.04048 -25.65940 -23.88262 -22.70462 -21.19636 -20.41978 -19.07331 -18.38420 -17.15485 -16.78847 -16.50510 -16.26427 -15.71346 -15.43659 -14.89076 -14.72234 -14.26866 -13.79342 -13.75945 -13.30122 -13.17604 -12.61441 -12.48415 -12.36537 -12.25869 -12.06166 -11.87252 -11.73309 -11.39882 -11.30368 -11.16797 -10.99630 -10.94699 -10.81016 -10.50258 -10.18871 -10.07325 -9.98668 -9.92120 -9.73824 -9.48270 -8.64638 -8.56020 -6.84796 -5.78169 -3.11288 2.62609 2.81496 3.38183 3.43640 3.44969 3.70303 4.20805 4.31534 4.46202 4.59866 4.64145 4.79319 4.89867 4.97227 5.08945 5.16878 5.19534 5.26868 5.39196 5.44411 5.48396 5.53270 5.57061 5.59739 5.66013 5.72853 5.76803 5.78919 5.86287 5.96185 6.06324 6.12489 6.23391 6.43325 6.51750 6.64169 6.66840 6.70404 7.45253 7.53152 7.74598 7.76838 8.17602 8.21943 9.15506 9.77055 10.44418 11.34832 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.003418 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.721898 B = 8190.763025 C = 8702.386934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.068 0.932 4 C -0.143 4.143 5 C -0.142 4.142 6 H 0.108 0.892 7 C 0.545 3.455 8 O -0.544 6.544 9 N -0.639 5.639 10 C 0.122 3.878 11 C -0.101 4.101 12 C 0.115 3.885 13 C -0.121 4.121 14 C 0.176 3.824 15 N -0.603 5.603 16 C -0.231 4.231 17 H 0.076 0.924 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.291 1.291 24 C 0.151 3.849 25 C 0.056 3.944 26 O -0.366 6.366 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.253 0.747 41 H 0.031 0.969 42 H 0.027 0.973 43 H 0.071 0.929 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 11.039 10.908 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.086 0.914 4 C -0.181 4.181 5 C -0.163 4.163 6 H 0.126 0.874 7 C 0.334 3.666 8 O -0.422 6.422 9 N -0.374 5.374 10 C 0.000 4.000 11 C -0.102 4.102 12 C -0.007 4.007 13 C -0.160 4.160 14 C 0.051 3.949 15 N -0.329 5.329 16 C -0.359 4.359 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.215 1.215 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.025 3.975 25 C -0.021 4.021 26 O -0.285 6.285 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.114 10.861 10.829 18.372 hybrid contribution 1.048 -0.460 -0.132 1.152 sum -9.066 10.401 10.697 17.459 Atomic orbital electron populations 1.21791 0.93072 1.03307 1.02185 1.23005 0.95640 0.95121 0.84990 0.91382 1.23074 0.97027 0.99750 0.98214 1.22643 1.01297 0.93062 0.99308 0.87404 1.19889 0.82344 0.87867 0.76518 1.90648 1.28435 1.77371 1.45735 1.50142 1.16982 1.08366 1.61919 1.23054 0.98386 0.80793 0.97774 1.22430 0.96889 0.94851 0.96041 1.23230 0.83252 0.98364 0.95846 1.22751 0.99713 1.00796 0.92721 1.21504 0.84601 0.95218 0.93616 1.44559 1.32331 1.56390 0.99623 1.18999 1.06283 1.15456 0.95152 0.90621 1.24820 0.99711 0.98426 0.97300 1.69936 1.46417 1.32314 1.07784 0.86158 0.80807 0.80330 0.78566 1.21518 1.20708 1.21720 1.20993 0.91861 0.95736 0.88936 1.23411 0.85311 1.00616 0.92769 1.89186 1.26661 1.74565 1.38080 0.91177 0.91927 0.91454 0.88069 0.90195 0.90038 0.89746 0.89316 0.89772 0.91474 0.92130 0.95395 0.91264 0.93642 0.95133 0.95556 0.91059 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.52 37.16 0.35 -1.00 16 2 C 0.07 0.73 3.92 -25.96 -0.10 0.63 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.14 -1.50 6.21 -25.17 -0.16 -1.65 16 5 C -0.14 -1.60 3.28 -90.20 -0.30 -1.89 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 7 C 0.54 8.05 7.30 -10.99 -0.08 7.97 16 8 O -0.54 -9.86 16.01 5.56 0.09 -9.77 16 9 N -0.64 -8.96 3.49 -185.66 -0.65 -9.61 16 10 C 0.12 1.73 8.16 -3.53 -0.03 1.70 16 11 C -0.10 -1.59 0.97 -154.72 -0.15 -1.74 16 12 C 0.12 1.52 7.43 -3.54 -0.03 1.50 16 13 C -0.12 -2.16 6.43 -25.01 -0.16 -2.32 16 14 C 0.18 4.01 5.44 -2.20 -0.01 3.99 16 15 N -0.60 -14.58 3.41 -170.20 -0.58 -15.15 16 16 C -0.23 -6.20 10.24 -15.06 -0.15 -6.35 16 17 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 18 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 19 N -0.92 -26.16 10.68 55.49 0.59 -25.57 16 20 Si 0.91 21.56 29.56 -169.99 -5.03 16.53 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.15 2.86 6.75 -3.57 -0.02 2.84 16 25 C 0.06 0.65 6.81 37.94 0.26 0.90 16 26 O -0.37 -4.93 11.35 -35.23 -0.40 -5.33 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.28 6.23 -51.93 -0.32 0.96 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.04 8.00 -51.93 -0.42 0.63 16 35 H 0.08 1.06 6.77 -51.93 -0.35 0.71 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 38 H 0.03 0.68 8.06 -51.93 -0.42 0.27 16 39 H 0.07 1.79 6.95 -51.93 -0.36 1.43 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.03 0.57 8.09 -51.92 -0.42 0.15 16 42 H 0.03 0.49 7.86 -51.93 -0.41 0.08 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 1.24 6.32 -51.93 -0.33 0.92 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -31.95 347.57 -8.62 -40.57 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.22 Total: -1.23 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.67 Total: 4.32 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.64 Total: -50.33 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.31 Total: -15.10 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.95 -8.62 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072872446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.117 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds