Wall clock time and date at job start Tue Mar 31 2020 06:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.33351 * 2 1 4 4 C 1.54478 * 110.37641 * 122.25492 * 2 1 3 5 5 C 1.54504 * 104.06794 * 142.91650 * 4 2 1 6 6 H 1.09003 * 110.50985 * 118.77649 * 5 4 2 7 7 C 1.50695 * 110.51376 * 241.35710 * 5 4 2 8 8 O 1.21276 * 119.99879 * 0.02562 * 7 5 4 9 9 N 1.34779 * 119.99937 * 179.97438 * 7 5 4 10 10 C 1.47848 * 134.36238 * 180.02562 * 9 7 5 11 11 C 1.52561 * 85.66530 * 156.38915 * 10 9 7 12 12 C 1.47844 * 134.36551 * 0.02814 * 9 7 5 13 13 C 1.53861 * 115.93327 * 265.04106 * 11 10 9 14 14 C 1.55403 * 101.30248 * 196.13902 * 13 11 10 15 15 N 1.47541 * 104.88228 * 35.97247 * 14 13 11 16 16 C 1.36941 * 125.65134 * 155.98927 * 15 14 13 17 17 H 1.08003 * 119.99202 * 190.37625 * 16 15 14 18 18 C 1.38814 * 120.00496 * 10.37170 * 16 15 14 19 19 N 1.31613 * 119.99765 * 9.04996 * 18 16 15 20 20 Si 1.86793 * 119.99953 * 189.05094 * 18 16 15 21 21 H 1.48502 * 109.47373 * 84.98993 * 20 18 16 22 22 H 1.48500 * 109.47289 * 324.99378 * 20 18 16 23 23 H 1.48496 * 109.47399 * 204.99122 * 20 18 16 24 24 C 1.47358 * 108.68306 * 335.71847 * 15 14 13 25 25 C 1.54488 * 104.06062 * 0.02562 * 5 4 2 26 26 O 1.44425 * 104.80346 * 336.01962 * 25 5 4 27 27 H 1.09007 * 109.46951 * 297.74540 * 1 2 3 28 28 H 1.08996 * 109.47499 * 57.74576 * 1 2 3 29 29 H 1.09002 * 109.47298 * 177.74891 * 1 2 3 30 30 H 1.09002 * 110.50947 * 24.26886 * 4 2 1 31 31 H 1.09003 * 110.62685 * 261.62555 * 4 2 1 32 32 H 1.09000 * 113.84681 * 42.19803 * 10 9 7 33 33 H 1.09003 * 113.95486 * 270.58433 * 10 9 7 34 34 H 1.08998 * 113.84555 * 89.42570 * 12 9 7 35 35 H 1.09002 * 113.84414 * 317.79248 * 12 9 7 36 36 H 1.09003 * 111.03238 * 314.36840 * 13 11 10 37 37 H 1.09001 * 111.03750 * 78.29622 * 13 11 10 38 38 H 1.08998 * 110.48051 * 277.08333 * 14 13 11 39 39 H 1.09000 * 110.30081 * 154.76926 * 14 13 11 40 40 H 0.96997 * 119.99869 * 179.97438 * 19 18 16 41 41 H 1.09008 * 109.97692 * 121.64300 * 24 15 14 42 42 H 1.08997 * 109.98487 * 242.93394 * 24 15 14 43 43 H 1.09000 * 110.36846 * 94.84832 * 25 5 4 44 44 H 1.08990 * 110.37073 * 217.18653 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7728 1.2246 5 6 3.3194 -1.5028 0.6880 6 1 4.2112 -1.1745 1.2219 7 6 3.1525 -2.9956 0.8090 8 8 2.1333 -3.4557 1.2782 9 7 4.1356 -3.8193 0.3947 10 6 4.3091 -5.2872 0.3621 11 6 5.3090 -5.0279 -0.7606 12 6 5.4700 -3.6151 -0.2081 13 6 4.7548 -5.1305 -2.1923 14 6 6.0660 -5.2388 -3.0194 15 7 6.9791 -6.0371 -2.1793 16 6 8.0398 -6.7755 -2.6321 17 1 8.5468 -7.4573 -1.9654 18 6 8.4632 -6.6478 -3.9479 19 7 7.9676 -5.6954 -4.7092 20 14 9.7365 -7.8275 -4.6380 21 1 9.0601 -9.0568 -5.1244 22 1 10.7080 -8.1855 -3.5735 23 1 10.4536 -7.1784 -5.7647 24 6 6.5643 -5.9027 -0.7717 25 6 3.3901 -1.0841 -0.7973 26 8 2.0354 -0.7225 -1.1437 27 1 -0.3633 0.4785 0.9096 28 1 -0.3634 0.5484 -0.8690 29 1 -0.3634 -1.0269 -0.0404 30 1 1.3283 -1.4917 1.5775 31 1 2.3408 -0.0838 2.0239 32 1 3.4189 -5.8292 0.0429 33 1 4.7582 -5.7000 1.2654 34 1 6.2730 -3.5165 0.5223 35 1 5.4930 -2.8418 -0.9760 36 1 4.1384 -6.0217 -2.3102 37 1 4.1978 -4.2331 -2.4615 38 1 6.4856 -4.2492 -3.2003 39 1 5.8764 -5.7492 -3.9636 40 1 8.2637 -5.6059 -5.6285 41 1 6.3381 -6.8842 -0.3548 42 1 7.3560 -5.4258 -0.1939 43 1 4.0541 -0.2284 -0.9191 44 1 3.7287 -1.9187 -1.4111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072872446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:00 Heat of formation + Delta-G solvation = -39.213498 kcal Electronic energy + Delta-G solvation = -24565.362504 eV Core-core repulsion = 21097.768729 eV Total energy + Delta-G solvation = -3467.593775 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03230 -40.69307 -39.03353 -37.23408 -34.11643 -33.35833 -32.85064 -31.12938 -30.09392 -27.65928 -27.36917 -26.75765 -25.50035 -23.74080 -22.23838 -21.98940 -20.23862 -19.67364 -18.62006 -18.07139 -17.55730 -17.37403 -16.85078 -16.64146 -16.44188 -15.98846 -15.61973 -15.45125 -14.87711 -14.39901 -14.15839 -14.05188 -13.75013 -13.66790 -13.35345 -13.23892 -13.16228 -12.82300 -12.80658 -12.72983 -12.49140 -12.23451 -12.14294 -12.00722 -11.90714 -11.76298 -11.75399 -11.66021 -11.33241 -10.98103 -10.64857 -10.56097 -9.73451 -8.81423 -7.84699 -5.18489 1.49025 1.50901 1.53307 1.58489 1.73046 2.52441 2.90094 3.21679 3.29948 3.43029 3.48864 3.63937 3.72834 3.83470 4.01588 4.07904 4.15128 4.17812 4.33528 4.38992 4.46673 4.50423 4.51908 4.61317 4.63743 4.72077 4.76463 4.80318 4.85213 4.88153 4.92893 4.98083 5.07423 5.17398 5.19174 5.21575 5.28608 5.50719 5.62094 5.76408 5.87641 6.23665 6.65972 7.06055 7.12030 7.80088 8.46541 9.27166 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031252 B = 0.003418 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.721898 B = 8190.763025 C = 8702.386934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.094 0.906 4 C -0.140 4.140 5 C -0.137 4.137 6 H 0.140 0.860 7 C 0.538 3.462 8 O -0.585 6.585 9 N -0.638 5.638 10 C 0.125 3.875 11 C -0.097 4.097 12 C 0.125 3.875 13 C -0.106 4.106 14 C 0.184 3.816 15 N -0.625 5.625 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.063 4.063 19 N -0.947 5.947 20 Si 0.973 3.027 21 H -0.289 1.289 22 H -0.268 1.268 23 H -0.296 1.296 24 C 0.150 3.850 25 C 0.055 3.945 26 O -0.399 6.399 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.006 0.994 39 H 0.028 0.972 40 H 0.247 0.753 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.100 0.900 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.907 12.279 12.840 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.112 0.888 4 C -0.178 4.178 5 C -0.158 4.158 6 H 0.158 0.842 7 C 0.329 3.671 8 O -0.466 6.466 9 N -0.372 5.372 10 C 0.003 3.997 11 C -0.098 4.098 12 C 0.003 3.997 13 C -0.144 4.144 14 C 0.059 3.941 15 N -0.352 5.352 16 C -0.369 4.369 17 H 0.099 0.901 18 C -0.256 4.256 19 N -0.596 5.596 20 Si 0.802 3.198 21 H -0.216 1.216 22 H -0.193 1.193 23 H -0.223 1.223 24 C 0.024 3.976 25 C -0.022 4.022 26 O -0.319 6.319 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.024 0.976 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.118 0.882 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.595 12.097 12.794 20.052 hybrid contribution 0.857 -0.877 -0.713 1.419 sum -8.738 11.220 12.081 18.659 Atomic orbital electron populations 1.21822 0.92866 1.02102 1.03549 1.23250 0.96003 0.95987 0.83991 0.88837 1.23079 0.96014 0.99647 0.99058 1.22731 1.03013 0.90350 0.99693 0.84239 1.20548 0.81562 0.89356 0.75616 1.90635 1.29917 1.78363 1.47637 1.50140 1.17245 1.08235 1.61559 1.23063 0.97548 0.81314 0.97786 1.22290 0.95780 0.96525 0.95193 1.23299 0.83425 0.96574 0.96364 1.22523 0.97146 1.01298 0.93456 1.21231 0.86744 0.93244 0.92883 1.44844 1.31972 1.56167 1.02179 1.19379 1.06590 1.15482 0.95430 0.90145 1.25598 1.02077 1.00118 0.97826 1.70128 1.47899 1.33973 1.07576 0.85170 0.78720 0.78114 0.77779 1.21583 1.19311 1.22300 1.21147 0.93379 0.96854 0.86185 1.23506 0.85100 1.01204 0.92413 1.89157 1.27787 1.75281 1.39691 0.88886 0.91597 0.93821 0.90688 0.87121 0.90777 0.87519 0.86802 0.88985 0.91753 0.90860 0.97571 0.95371 0.94394 0.94530 0.94378 0.88242 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.52 71.98 0.69 -1.86 16 2 C 0.06 1.20 3.92 31.10 0.12 1.32 16 3 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 4 C -0.14 -2.60 6.21 31.61 0.20 -2.40 16 5 C -0.14 -2.70 3.28 -10.52 -0.03 -2.74 16 6 H 0.14 1.87 8.14 -2.39 -0.02 1.86 16 7 C 0.54 14.98 7.30 87.66 0.64 15.62 16 8 O -0.58 -20.89 16.01 -3.02 -0.05 -20.94 16 9 N -0.64 -16.44 3.49 -859.69 -3.00 -19.44 16 10 C 0.13 3.28 8.16 85.97 0.70 3.98 16 11 C -0.10 -2.87 0.97 -52.11 -0.05 -2.92 16 12 C 0.12 2.94 7.43 85.97 0.64 3.58 16 13 C -0.11 -3.74 6.43 31.71 0.20 -3.53 16 14 C 0.18 8.62 5.44 87.01 0.47 9.09 16 15 N -0.63 -30.32 3.41 -692.39 -2.36 -32.68 16 16 C -0.24 -12.93 10.24 84.03 0.86 -12.07 16 17 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 18 C -0.06 -3.47 5.40 84.86 0.46 -3.01 16 19 N -0.95 -55.58 10.68 21.65 0.23 -55.35 16 20 Si 0.97 44.75 29.56 68.60 2.03 46.78 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 C 0.15 5.44 6.75 86.22 0.58 6.02 16 25 C 0.05 1.13 6.81 72.49 0.49 1.63 16 26 O -0.40 -10.24 11.35 -148.98 -1.69 -11.93 16 27 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.83 6.23 -2.39 -0.01 1.82 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 2.07 8.12 -2.39 -0.02 2.06 16 33 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.11 2.19 8.00 -2.39 -0.02 2.18 16 35 H 0.09 2.08 6.77 -2.39 -0.02 2.06 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.40 8.06 -2.39 -0.02 2.38 16 38 H 0.01 0.32 8.06 -2.39 -0.02 0.30 16 39 H 0.03 1.52 6.95 -2.39 -0.02 1.51 16 40 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 41 H 0.04 1.30 8.09 -2.38 -0.02 1.28 16 42 H 0.04 1.32 7.86 -2.39 -0.02 1.30 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.95 6.32 -2.39 -0.02 1.94 16 Total: -1.00 -71.43 347.57 2.10 -69.33 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.97 Total: 11.52 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 5.97 Total: 12.71 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -5.13 Total: -107.46 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.74 Total: -32.87 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.43 2.10 -69.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072872446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.114 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds