Wall clock time and date at job start Tue Mar 31 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.67978 * 2 1 4 4 C 1.54998 * 110.61591 * 237.03615 * 2 1 3 5 5 C 1.54808 * 102.09331 * 204.47807 * 4 2 1 6 6 C 1.54103 * 104.18818 * 20.87793 * 5 4 2 7 7 H 1.08993 * 109.87906 * 242.45782 * 6 5 4 8 8 C 1.50707 * 109.87432 * 121.45559 * 6 5 4 9 9 O 1.21284 * 119.99778 * 245.00131 * 8 6 5 10 10 N 1.34774 * 120.00115 * 65.00465 * 8 6 5 11 11 C 1.47848 * 134.36289 * 179.97438 * 10 8 6 12 12 C 1.52558 * 85.66262 * 156.40560 * 11 10 8 13 13 C 1.47855 * 134.36265 * 0.04462 * 10 8 6 14 14 C 1.53852 * 115.94227 * 140.70848 * 12 11 10 15 15 C 1.55156 * 101.41133 * 163.65954 * 14 12 11 16 16 N 1.47545 * 105.09664 * 324.29936 * 15 14 12 17 17 C 1.36938 * 125.65649 * 203.98571 * 16 15 14 18 18 H 1.08003 * 119.99550 * 161.51689 * 17 16 15 19 19 C 1.38811 * 120.00021 * 341.51717 * 17 16 15 20 20 N 1.31621 * 119.99648 * 157.57335 * 19 17 16 21 21 Si 1.86798 * 120.00208 * 337.56794 * 19 17 16 22 22 H 1.48500 * 109.46650 * 84.53804 * 21 19 17 23 23 H 1.48499 * 109.47009 * 204.53730 * 21 19 17 24 24 H 1.48496 * 109.47233 * 324.54113 * 21 19 17 25 25 C 1.47617 * 108.54666 * 23.94829 * 16 15 14 26 26 O 1.43744 * 107.29348 * 2.03696 * 6 5 4 27 27 H 1.09006 * 109.46961 * 182.96280 * 1 2 3 28 28 H 1.09001 * 109.46989 * 302.96404 * 1 2 3 29 29 H 1.09003 * 109.47311 * 62.96543 * 1 2 3 30 30 H 1.08998 * 110.90958 * 86.27867 * 4 2 1 31 31 H 1.08998 * 110.90841 * 322.67306 * 4 2 1 32 32 H 1.09006 * 110.48981 * 262.20534 * 5 4 2 33 33 H 1.08998 * 110.60451 * 139.61858 * 5 4 2 34 34 H 1.09000 * 113.84303 * 42.22219 * 11 10 8 35 35 H 1.09001 * 113.84186 * 270.58631 * 11 10 8 36 36 H 1.09000 * 113.83742 * 89.41233 * 13 10 8 37 37 H 1.09000 * 113.83833 * 317.78054 * 13 10 8 38 38 H 1.09001 * 111.03751 * 45.62847 * 14 12 11 39 39 H 1.09000 * 111.07419 * 281.70667 * 14 12 11 40 40 H 1.09001 * 110.33356 * 83.22926 * 15 14 12 41 41 H 1.08997 * 110.33549 * 205.36430 * 15 14 12 42 42 H 0.97008 * 119.99908 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.95770 * 238.59100 * 25 16 15 44 44 H 1.08997 * 109.97452 * 117.30741 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0757 -0.7894 -1.2172 5 6 3.4794 -1.2168 -0.7236 6 6 3.3839 -1.1255 0.8117 7 1 4.0872 -0.3803 1.1832 8 6 3.6888 -2.4681 1.4248 9 8 2.8269 -3.0669 2.0327 10 7 4.9192 -3.0032 1.2976 11 6 5.5528 -4.2584 1.7545 12 6 6.5264 -4.0520 0.5982 13 6 6.1734 -2.5683 0.6465 14 6 7.9966 -4.4028 0.8854 15 6 8.5770 -4.4926 -0.5507 16 7 7.4922 -5.0684 -1.3683 17 6 7.6550 -5.7498 -2.5449 18 1 6.8625 -6.3825 -2.9166 19 6 8.8385 -5.6272 -3.2599 20 7 9.1923 -6.5653 -4.1127 21 14 9.9288 -4.1309 -3.0120 22 1 10.8143 -4.3524 -1.8406 23 1 10.7575 -3.9157 -4.2253 24 1 9.0815 -2.9351 -2.7727 25 6 6.2040 -4.7874 -0.7044 26 8 2.0384 -0.7354 1.1338 27 1 -0.3633 -1.0264 0.0531 28 1 -0.3633 0.5592 0.8622 29 1 -0.3634 0.4671 -0.9154 30 1 2.1509 -0.1476 -2.0950 31 1 1.4549 -1.6606 -1.4259 32 1 4.2407 -0.5333 -1.0998 33 1 3.6997 -2.2387 -1.0321 34 1 4.9183 -5.1378 1.6444 35 1 6.0158 -4.1855 2.7386 36 1 6.8251 -1.9812 1.2937 37 1 6.0270 -2.1179 -0.3352 38 1 8.0770 -5.3602 1.4004 39 1 8.4841 -3.6121 1.4557 40 1 8.8401 -3.4997 -0.9156 41 1 9.4501 -5.1448 -0.5663 42 1 10.0195 -6.4798 -4.6121 43 1 5.6862 -5.7214 -0.4865 44 1 5.5850 -4.1582 -1.3440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073002500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:01 Heat of formation + Delta-G solvation = -12.430947 kcal Electronic energy + Delta-G solvation = -24669.985285 eV Core-core repulsion = 21203.552889 eV Total energy + Delta-G solvation = -3466.432396 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94000 -39.76287 -37.87144 -35.89830 -32.60580 -32.44667 -31.97686 -30.15357 -28.83955 -27.23507 -26.36049 -25.63318 -23.48838 -22.37652 -21.46645 -21.01488 -19.47781 -18.51086 -17.40196 -16.83410 -16.56502 -16.44990 -15.78512 -15.19381 -15.04450 -14.97360 -14.29012 -13.99438 -13.70136 -13.49364 -13.23489 -12.95425 -12.88248 -12.67760 -12.52960 -12.16423 -11.99203 -11.78029 -11.69499 -11.57039 -11.33172 -11.14851 -11.09095 -11.04188 -10.66451 -10.49955 -10.27476 -10.07186 -10.02118 -9.48869 -9.38641 -8.74356 -8.67887 -7.10304 -5.98410 -3.29205 2.51556 2.65357 3.29784 3.42518 3.45386 3.61867 4.15816 4.33160 4.41310 4.50256 4.57273 4.58904 4.75623 4.79926 4.87556 5.02208 5.10372 5.17869 5.24363 5.26204 5.34502 5.40586 5.44489 5.45993 5.54411 5.61173 5.63630 5.72429 5.76284 5.82435 5.83756 5.89246 5.92543 6.04372 6.23395 6.45437 6.51865 6.56454 6.63928 6.68053 7.63203 7.67795 8.16570 8.27012 8.78465 9.64153 10.12255 11.17722 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.004069 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.004982 B = 6880.264774 C = 7495.476668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.148 4.148 6 C 0.068 3.932 7 H 0.091 0.909 8 C 0.535 3.465 9 O -0.527 6.527 10 N -0.641 5.641 11 C 0.127 3.873 12 C -0.105 4.105 13 C 0.113 3.887 14 C -0.117 4.117 15 C 0.111 3.889 16 N -0.609 5.609 17 C -0.242 4.242 18 H 0.092 0.908 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.303 1.303 24 H -0.277 1.277 25 C 0.163 3.837 26 O -0.347 6.347 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.060 0.940 42 H 0.263 0.737 43 H 0.041 0.959 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 14.248 9.582 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.186 4.186 5 C -0.186 4.186 6 C 0.007 3.993 7 H 0.109 0.891 8 C 0.324 3.676 9 O -0.402 6.402 10 N -0.378 5.378 11 C 0.005 3.995 12 C -0.106 4.106 13 C -0.010 4.010 14 C -0.156 4.156 15 C -0.014 4.014 16 N -0.336 5.336 17 C -0.369 4.369 18 H 0.109 0.891 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.714 3.286 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.203 1.203 25 C 0.038 3.962 26 O -0.265 6.265 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.086 13.857 9.905 19.795 hybrid contribution 0.961 1.000 -0.189 1.400 sum -9.125 14.857 9.716 19.960 Atomic orbital electron populations 1.21763 0.92840 1.03344 1.02334 1.23224 0.95568 0.95149 0.84925 0.90997 1.23195 0.95829 1.01104 0.98508 1.22943 0.98648 1.04230 0.92752 1.22486 0.86959 0.94259 0.95625 0.89123 1.20089 0.80992 0.86582 0.79955 1.90708 1.45484 1.62206 1.41838 1.50106 1.09082 1.22793 1.55820 1.23048 0.91787 0.87265 0.97450 1.22467 0.96223 0.94971 0.96981 1.23251 0.82792 0.96900 0.98049 1.22563 0.93089 1.01697 0.98248 1.22009 0.93257 0.97068 0.89091 1.44935 0.99585 1.65555 1.23529 1.18624 1.02963 1.19214 0.96096 0.89085 1.24996 0.97342 0.98140 0.97179 1.69849 1.23917 1.31893 1.29496 0.86959 0.80335 0.85311 0.75967 1.21169 1.23093 1.20303 1.20918 0.89523 0.96400 0.89399 1.89000 1.26011 1.73102 1.38387 0.91472 0.91832 0.90983 0.89700 0.90026 0.89521 0.89461 0.89665 0.89500 0.89360 0.89527 0.90304 0.91106 0.95675 0.92168 0.92671 0.94149 0.94937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.65 37.16 0.36 -0.88 16 2 C 0.07 0.68 3.98 -25.68 -0.10 0.58 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.15 -1.41 6.59 -24.72 -0.16 -1.57 16 5 C -0.15 -1.56 5.68 -25.20 -0.14 -1.71 16 6 C 0.07 0.85 3.62 -27.30 -0.10 0.75 16 7 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 8 C 0.54 8.25 7.18 -10.98 -0.08 8.18 16 9 O -0.53 -10.32 17.25 -14.02 -0.24 -10.56 16 10 N -0.64 -8.70 3.60 -185.65 -0.67 -9.37 16 11 C 0.13 1.64 8.17 -3.53 -0.03 1.61 16 12 C -0.11 -1.49 0.97 -154.70 -0.15 -1.64 16 13 C 0.11 1.35 7.64 -3.51 -0.03 1.32 16 14 C -0.12 -1.69 6.45 -25.15 -0.16 -1.85 16 15 C 0.11 2.21 4.71 -2.33 -0.01 2.19 16 16 N -0.61 -13.93 3.23 -170.14 -0.55 -14.48 16 17 C -0.24 -6.67 10.59 -15.06 -0.16 -6.82 16 18 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 19 C 0.02 0.62 5.43 -17.43 -0.09 0.53 16 20 N -0.91 -27.51 13.97 55.49 0.78 -26.73 16 21 Si 0.88 21.70 24.27 -169.99 -4.13 17.58 16 22 H -0.28 -6.68 6.49 56.52 0.37 -6.31 16 23 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.28 -6.60 6.66 56.52 0.38 -6.22 16 25 C 0.16 3.02 6.76 -3.42 -0.02 2.99 16 26 O -0.35 -4.81 10.44 -54.81 -0.57 -5.39 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.83 8.06 -51.93 -0.42 0.42 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 34 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.86 8.02 -51.93 -0.42 0.44 16 37 H 0.09 1.03 7.32 -51.93 -0.38 0.65 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 40 H 0.03 0.52 5.56 -51.93 -0.29 0.23 16 41 H 0.06 1.30 6.64 -51.93 -0.34 0.96 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 44 H 0.03 0.61 7.87 -51.93 -0.41 0.20 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -34.06 345.24 -8.39 -42.45 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.33 Total: -2.39 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.88 Total: 3.67 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.44 Total: -50.57 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.81 Total: -15.94 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.13 Total: 17.58 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.06 -8.39 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073002500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.022 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds