Wall clock time and date at job start Tue Mar 31 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.67978 * 2 1 4 4 C 1.54998 * 110.61591 * 237.03615 * 2 1 3 5 5 C 1.54808 * 102.09331 * 204.47807 * 4 2 1 6 6 C 1.54103 * 104.18818 * 20.87793 * 5 4 2 7 7 H 1.08993 * 109.87906 * 242.45782 * 6 5 4 8 8 C 1.50707 * 109.87432 * 121.45559 * 6 5 4 9 9 O 1.21284 * 119.99778 * 245.00131 * 8 6 5 10 10 N 1.34774 * 120.00115 * 65.00465 * 8 6 5 11 11 C 1.47848 * 134.36289 * 179.97438 * 10 8 6 12 12 C 1.52558 * 85.66262 * 156.40560 * 11 10 8 13 13 C 1.47855 * 134.36265 * 0.04462 * 10 8 6 14 14 C 1.53852 * 115.94227 * 140.70848 * 12 11 10 15 15 C 1.55156 * 101.41133 * 163.65954 * 14 12 11 16 16 N 1.47545 * 105.09664 * 324.29936 * 15 14 12 17 17 C 1.36938 * 125.65649 * 203.98571 * 16 15 14 18 18 H 1.08003 * 119.99550 * 161.51689 * 17 16 15 19 19 C 1.38811 * 120.00021 * 341.51717 * 17 16 15 20 20 N 1.31621 * 119.99648 * 157.57335 * 19 17 16 21 21 Si 1.86798 * 120.00208 * 337.56794 * 19 17 16 22 22 H 1.48500 * 109.46650 * 84.53804 * 21 19 17 23 23 H 1.48499 * 109.47009 * 204.53730 * 21 19 17 24 24 H 1.48496 * 109.47233 * 324.54113 * 21 19 17 25 25 C 1.47617 * 108.54666 * 23.94829 * 16 15 14 26 26 O 1.43744 * 107.29348 * 2.03696 * 6 5 4 27 27 H 1.09006 * 109.46961 * 182.96280 * 1 2 3 28 28 H 1.09001 * 109.46989 * 302.96404 * 1 2 3 29 29 H 1.09003 * 109.47311 * 62.96543 * 1 2 3 30 30 H 1.08998 * 110.90958 * 86.27867 * 4 2 1 31 31 H 1.08998 * 110.90841 * 322.67306 * 4 2 1 32 32 H 1.09006 * 110.48981 * 262.20534 * 5 4 2 33 33 H 1.08998 * 110.60451 * 139.61858 * 5 4 2 34 34 H 1.09000 * 113.84303 * 42.22219 * 11 10 8 35 35 H 1.09001 * 113.84186 * 270.58631 * 11 10 8 36 36 H 1.09000 * 113.83742 * 89.41233 * 13 10 8 37 37 H 1.09000 * 113.83833 * 317.78054 * 13 10 8 38 38 H 1.09001 * 111.03751 * 45.62847 * 14 12 11 39 39 H 1.09000 * 111.07419 * 281.70667 * 14 12 11 40 40 H 1.09001 * 110.33356 * 83.22926 * 15 14 12 41 41 H 1.08997 * 110.33549 * 205.36430 * 15 14 12 42 42 H 0.97008 * 119.99908 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.95770 * 238.59100 * 25 16 15 44 44 H 1.08997 * 109.97452 * 117.30741 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0757 -0.7894 -1.2172 5 6 3.4794 -1.2168 -0.7236 6 6 3.3839 -1.1255 0.8117 7 1 4.0872 -0.3803 1.1832 8 6 3.6888 -2.4681 1.4248 9 8 2.8269 -3.0669 2.0327 10 7 4.9192 -3.0032 1.2976 11 6 5.5528 -4.2584 1.7545 12 6 6.5264 -4.0520 0.5982 13 6 6.1734 -2.5683 0.6465 14 6 7.9966 -4.4028 0.8854 15 6 8.5770 -4.4926 -0.5507 16 7 7.4922 -5.0684 -1.3683 17 6 7.6550 -5.7498 -2.5449 18 1 6.8625 -6.3825 -2.9166 19 6 8.8385 -5.6272 -3.2599 20 7 9.1923 -6.5653 -4.1127 21 14 9.9288 -4.1309 -3.0120 22 1 10.8143 -4.3524 -1.8406 23 1 10.7575 -3.9157 -4.2253 24 1 9.0815 -2.9351 -2.7727 25 6 6.2040 -4.7874 -0.7044 26 8 2.0384 -0.7354 1.1338 27 1 -0.3633 -1.0264 0.0531 28 1 -0.3633 0.5592 0.8622 29 1 -0.3634 0.4671 -0.9154 30 1 2.1509 -0.1476 -2.0950 31 1 1.4549 -1.6606 -1.4259 32 1 4.2407 -0.5333 -1.0998 33 1 3.6997 -2.2387 -1.0321 34 1 4.9183 -5.1378 1.6444 35 1 6.0158 -4.1855 2.7386 36 1 6.8251 -1.9812 1.2937 37 1 6.0270 -2.1179 -0.3352 38 1 8.0770 -5.3602 1.4004 39 1 8.4841 -3.6121 1.4557 40 1 8.8401 -3.4997 -0.9156 41 1 9.4501 -5.1448 -0.5663 42 1 10.0195 -6.4798 -4.6121 43 1 5.6862 -5.7214 -0.4865 44 1 5.5850 -4.1582 -1.3440 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073002500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:00 Heat of formation + Delta-G solvation = -36.032661 kcal Electronic energy + Delta-G solvation = -24671.008732 eV Core-core repulsion = 21203.552889 eV Total energy + Delta-G solvation = -3467.455844 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03916 -40.74842 -39.07488 -37.39531 -34.33719 -33.36435 -33.02206 -31.65091 -30.15911 -28.45499 -27.43688 -26.85661 -24.97540 -23.28255 -22.71235 -22.22241 -20.61782 -19.69893 -18.84360 -18.15776 -17.60387 -17.49767 -17.08924 -16.86843 -16.32250 -15.99401 -15.33018 -15.15793 -15.02556 -14.83424 -14.52454 -14.25684 -14.17435 -13.79293 -13.42254 -13.34042 -13.18340 -13.05788 -12.85502 -12.83398 -12.68884 -12.49513 -12.16465 -11.97528 -11.92006 -11.84539 -11.73566 -11.58425 -11.23944 -11.08015 -10.78631 -10.46935 -9.77561 -9.04477 -8.15893 -5.43438 1.34799 1.43439 1.46590 1.53330 1.58547 2.45012 2.77012 3.04548 3.15079 3.29364 3.44282 3.50140 3.61540 3.79943 3.83898 3.94441 4.01712 4.16221 4.22061 4.37160 4.41767 4.43327 4.53187 4.54492 4.62665 4.64661 4.74854 4.77673 4.85669 4.87039 4.87853 4.94370 4.95558 5.03823 5.09576 5.12060 5.17708 5.24761 5.30704 5.68155 5.84431 6.11068 6.59348 6.77313 7.04492 7.54847 8.10893 9.04253 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.004069 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.004982 B = 6880.264774 C = 7495.476668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.145 4.145 6 C 0.070 3.930 7 H 0.120 0.880 8 C 0.527 3.473 9 O -0.583 6.583 10 N -0.640 5.640 11 C 0.127 3.873 12 C -0.099 4.099 13 C 0.122 3.878 14 C -0.099 4.099 15 C 0.099 3.901 16 N -0.627 5.627 17 C -0.238 4.238 18 H 0.049 0.951 19 C -0.040 4.040 20 N -0.961 5.961 21 Si 0.954 3.046 22 H -0.264 1.264 23 H -0.313 1.313 24 H -0.259 1.259 25 C 0.160 3.840 26 O -0.381 6.381 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.262 0.738 43 H 0.023 0.977 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.186 17.976 11.341 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.115 0.885 4 C -0.185 4.185 5 C -0.183 4.183 6 C 0.009 3.991 7 H 0.138 0.862 8 C 0.317 3.683 9 O -0.462 6.462 10 N -0.376 5.376 11 C 0.006 3.994 12 C -0.101 4.101 13 C 0.001 3.999 14 C -0.137 4.137 15 C -0.025 4.025 16 N -0.354 5.354 17 C -0.367 4.367 18 H 0.067 0.933 19 C -0.234 4.234 20 N -0.608 5.608 21 Si 0.782 3.218 22 H -0.189 1.189 23 H -0.242 1.242 24 H -0.184 1.184 25 C 0.035 3.965 26 O -0.300 6.300 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.149 0.851 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.880 17.613 11.695 22.931 hybrid contribution 0.493 -0.290 -0.763 0.954 sum -8.388 17.322 10.932 22.134 Atomic orbital electron populations 1.21803 0.92359 1.02383 1.03719 1.23501 0.96125 0.95894 0.83800 0.88514 1.23219 0.94900 1.00947 0.99454 1.22964 1.00071 1.03586 0.91657 1.22631 0.87127 0.92980 0.96396 0.86247 1.20755 0.80749 0.87464 0.79286 1.90675 1.47138 1.63926 1.44506 1.50172 1.09281 1.22883 1.55252 1.23152 0.91078 0.86779 0.98431 1.22270 0.96509 0.96556 0.94747 1.23469 0.81952 0.95344 0.99182 1.22537 0.92337 1.03854 0.95020 1.22201 0.91955 0.96296 0.92013 1.45007 1.02420 1.65403 1.22600 1.18513 1.01692 1.18618 0.97881 0.93340 1.25724 0.99364 1.00871 0.97490 1.70001 1.24995 1.34081 1.31688 0.85838 0.78534 0.81401 0.76071 1.18910 1.24173 1.18365 1.20982 0.87661 0.96272 0.91539 1.88975 1.26934 1.73825 1.40313 0.93472 0.91677 0.88489 0.87027 0.91798 0.86682 0.91801 0.91395 0.86163 0.85093 0.89166 0.89855 0.86398 0.94872 0.94275 0.92887 0.95873 0.95549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.65 71.98 0.69 -1.61 16 2 C 0.06 1.13 3.98 31.28 0.12 1.25 16 3 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.15 -2.52 6.59 31.90 0.21 -2.31 16 5 C -0.14 -2.73 5.68 31.58 0.18 -2.55 16 6 C 0.07 1.58 3.62 30.22 0.11 1.69 16 7 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 8 C 0.53 15.66 7.18 87.66 0.63 16.29 16 9 O -0.58 -23.14 17.25 15.68 0.27 -22.87 16 10 N -0.64 -15.73 3.60 -859.67 -3.10 -18.83 16 11 C 0.13 2.98 8.17 85.97 0.70 3.68 16 12 C -0.10 -2.51 0.97 -52.10 -0.05 -2.56 16 13 C 0.12 2.35 7.64 85.98 0.66 3.00 16 14 C -0.10 -2.41 6.45 31.62 0.20 -2.21 16 15 C 0.10 3.68 4.71 86.92 0.41 4.09 16 16 N -0.63 -28.55 3.23 -692.20 -2.23 -30.78 16 17 C -0.24 -13.59 10.59 84.03 0.89 -12.70 16 18 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 19 C -0.04 -2.34 5.43 84.86 0.46 -1.88 16 20 N -0.96 -60.42 13.97 21.65 0.30 -60.12 16 21 Si 0.95 44.54 24.27 68.60 1.66 46.21 16 22 H -0.26 -11.32 6.49 99.48 0.65 -10.67 16 23 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 24 H -0.26 -11.19 6.66 99.48 0.66 -10.53 16 25 C 0.16 5.89 6.76 86.17 0.58 6.47 16 26 O -0.38 -10.16 10.44 -130.26 -1.36 -11.52 16 27 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.30 8.06 -2.39 -0.02 1.28 16 32 H 0.11 1.50 8.14 -2.38 -0.02 1.49 16 33 H 0.06 1.50 7.69 -2.39 -0.02 1.49 16 34 H 0.07 1.83 8.02 -2.39 -0.02 1.81 16 35 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.13 1.57 8.02 -2.39 -0.02 1.55 16 37 H 0.09 1.74 7.32 -2.39 -0.02 1.73 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.12 1.88 7.97 -2.39 -0.02 1.86 16 40 H 0.03 1.20 5.56 -2.39 -0.01 1.19 16 41 H 0.04 1.61 6.64 -2.39 -0.02 1.59 16 42 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 43 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 44 H 0.03 1.00 7.87 -2.39 -0.02 0.98 16 Total: -1.00 -79.88 345.24 2.22 -77.66 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.87 Total: 9.61 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 5.80 Total: 10.65 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -5.03 Total: -109.74 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.09 Total: -34.39 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.66 Total: 46.21 kcal Total: -79.88 2.22 -77.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073002500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.629 kcal (2) G-P(sol) polarization free energy of solvation -79.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds