Wall clock time and date at job start Tue Mar 31 2020 07:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87222 * 2 1 4 4 O 1.43751 * 109.87945 * 121.15623 * 2 1 3 5 5 C 1.44379 * 106.97359 * 92.91263 * 4 2 1 6 6 C 1.54995 * 103.49054 * 40.06318 * 5 4 2 7 7 C 1.54093 * 109.88185 * 238.98843 * 2 1 3 8 8 H 1.08999 * 110.49015 * 1.28480 * 7 2 1 9 9 C 1.50707 * 110.49016 * 123.79448 * 7 2 1 10 10 O 1.21281 * 119.99719 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99882 * 179.97438 * 9 7 2 12 12 C 1.47384 * 135.85789 * 359.63880 * 11 9 7 13 13 C 1.52069 * 87.41438 * 154.38642 * 12 11 9 14 14 C 1.47396 * 135.84948 * 179.97438 * 11 9 7 15 15 C 1.53519 * 117.21124 * 267.27699 * 13 12 11 16 16 C 1.54624 * 102.70378 * 262.93087 * 15 13 12 17 17 N 1.47145 * 107.38019 * 339.38360 * 16 15 13 18 18 C 1.36929 * 125.58319 * 179.05235 * 17 16 15 19 19 H 1.07997 * 120.00266 * 180.02562 * 18 17 16 20 20 C 1.38821 * 119.99958 * 0.02562 * 18 17 16 21 21 N 1.31613 * 119.99743 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47114 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47093 * 120.00073 * 22 20 18 25 25 H 1.48504 * 109.46817 * 240.00012 * 22 20 18 26 26 C 1.47755 * 108.83606 * 359.08814 * 17 16 15 27 27 H 1.09002 * 109.47153 * 181.00966 * 1 2 3 28 28 H 1.09001 * 109.46832 * 61.01157 * 1 2 3 29 29 H 1.09004 * 109.47261 * 301.01138 * 1 2 3 30 30 H 1.09001 * 110.61656 * 281.56312 * 5 4 2 31 31 H 1.08995 * 110.75266 * 158.62633 * 5 4 2 32 32 H 1.09009 * 110.90467 * 204.78229 * 6 5 4 33 33 H 1.08988 * 110.93885 * 81.19010 * 6 5 4 34 34 H 1.09005 * 113.54199 * 268.99628 * 12 11 9 35 35 H 1.09003 * 113.54393 * 39.67194 * 12 11 9 36 36 H 1.08999 * 113.54572 * 320.33394 * 14 11 9 37 37 H 1.09007 * 113.54209 * 91.00512 * 14 11 9 38 38 H 1.09008 * 110.76393 * 21.23458 * 15 13 12 39 39 H 1.09002 * 110.76227 * 144.62201 * 15 13 12 40 40 H 1.09000 * 109.86620 * 98.83738 * 16 15 13 41 41 H 1.09005 * 109.86637 * 219.80000 * 16 15 13 42 42 H 0.97002 * 119.99892 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.40645 * 263.50426 * 26 17 16 44 44 H 1.09005 * 110.40184 * 141.08072 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6994 1.1569 5 6 2.2281 -2.0723 0.7621 6 6 2.8325 -1.9515 -0.6600 7 6 2.0540 -0.7466 -1.2420 8 1 1.2238 -1.0907 -1.8588 9 6 2.9718 0.1409 -2.0427 10 8 3.1992 1.2722 -1.6695 11 7 3.5407 -0.3230 -3.1730 12 6 3.5206 -1.5911 -3.9238 13 6 3.8560 -0.7811 -5.1663 14 6 4.4586 0.2153 -4.1930 15 6 2.6805 -0.2928 -6.0245 16 6 2.6030 -1.3645 -7.1364 17 7 3.9102 -2.0381 -7.1895 18 6 4.2441 -3.0643 -8.0323 19 1 5.2340 -3.4942 -7.9940 20 6 3.3101 -3.5520 -8.9361 21 7 2.1035 -3.0284 -8.9824 22 14 3.7658 -4.9515 -10.0864 23 1 5.1717 -5.3595 -9.8369 24 1 2.8641 -6.1060 -9.8428 25 1 3.6240 -4.5010 -11.4943 26 6 4.8032 -1.4264 -6.1837 27 1 -0.3633 -1.0275 0.0181 28 1 -0.3633 0.4981 -0.8989 29 1 -0.3634 0.5295 0.8808 30 1 1.2814 -2.6117 0.7323 31 1 2.9284 -2.5655 1.4362 32 1 2.6432 -2.8542 -1.2411 33 1 3.9003 -1.7385 -0.6125 34 1 4.3092 -2.2838 -3.6296 35 1 2.5373 -2.0600 -3.9601 36 1 4.2584 1.2545 -4.4539 37 1 5.5101 0.0289 -3.9743 38 1 1.7591 -0.2727 -5.4423 39 1 2.8928 0.6889 -6.4479 40 1 1.8228 -2.0879 -6.8999 41 1 2.3896 -0.8898 -8.0942 42 1 1.4509 -3.3690 -9.6142 43 1 5.4358 -0.6694 -6.6474 44 1 5.4139 -2.1907 -5.7029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073080885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:36 Heat of formation + Delta-G solvation = -15.486073 kcal Electronic energy + Delta-G solvation = -24549.855125 eV Core-core repulsion = 21083.290248 eV Total energy + Delta-G solvation = -3466.564877 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97772 -39.82853 -37.89762 -35.72063 -32.82153 -32.17012 -31.44099 -29.59203 -28.79944 -27.07361 -26.04031 -25.57284 -23.78655 -22.29186 -21.43296 -20.35212 -19.25833 -18.39417 -17.47442 -16.78280 -16.57230 -16.00493 -15.81358 -15.22549 -14.86306 -14.55869 -14.35813 -13.90244 -13.66264 -13.51464 -13.27949 -12.93015 -12.51353 -12.34554 -12.19013 -12.06270 -11.97971 -11.88212 -11.63758 -11.17328 -11.08577 -11.03392 -10.95975 -10.73497 -10.47917 -10.24469 -10.12326 -9.91768 -9.85714 -9.72120 -9.56727 -8.66010 -8.62013 -6.89994 -5.77213 -3.10974 2.59103 2.81344 3.35738 3.41680 3.43950 3.66414 4.22462 4.28968 4.42748 4.53454 4.59660 4.84819 4.89001 4.91961 5.03893 5.17839 5.21256 5.33512 5.35555 5.43250 5.46486 5.47997 5.57727 5.60650 5.62333 5.70472 5.76391 5.77062 5.85090 5.90986 6.06128 6.11707 6.17350 6.40005 6.45410 6.60078 6.64893 6.70284 7.50083 7.54881 7.76298 7.78143 8.13522 8.18717 9.15686 9.75707 10.41029 11.34415 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.003490 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.676534 B = 8020.935835 C = 8321.616916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 H 0.117 0.883 4 O -0.369 6.369 5 C 0.047 3.953 6 C -0.142 4.142 7 C -0.136 4.136 8 H 0.110 0.890 9 C 0.551 3.449 10 O -0.546 6.546 11 N -0.640 5.640 12 C 0.121 3.879 13 C -0.105 4.105 14 C 0.118 3.882 15 C -0.117 4.117 16 C 0.179 3.821 17 N -0.605 5.605 18 C -0.229 4.229 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.154 3.846 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.027 0.973 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 2.536 15.473 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 H 0.134 0.866 4 O -0.288 6.288 5 C -0.030 4.030 6 C -0.180 4.180 7 C -0.157 4.157 8 H 0.128 0.872 9 C 0.340 3.660 10 O -0.424 6.424 11 N -0.374 5.374 12 C -0.002 4.002 13 C -0.107 4.107 14 C -0.004 4.004 15 C -0.155 4.155 16 C 0.055 3.945 17 N -0.331 5.331 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.027 3.973 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.045 0.955 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.704 3.181 15.904 16.235 hybrid contribution 0.097 -0.972 -0.981 1.384 sum -0.607 2.209 14.923 15.098 Atomic orbital electron populations 1.22277 0.95127 1.02437 1.02814 1.22793 0.93872 0.98251 0.82814 0.86563 1.88929 1.86130 1.20550 1.33224 1.23541 0.99915 0.84796 0.94763 1.23110 1.00770 0.97309 0.96838 1.22677 0.98917 0.96352 0.97790 0.87213 1.19747 0.80531 0.87236 0.78487 1.90670 1.63474 1.19938 1.68292 1.49794 1.46935 1.17642 1.23046 1.22900 1.02507 0.87225 0.87530 1.22183 0.99030 0.95952 0.93545 1.22786 0.94028 0.99528 0.84079 1.22468 0.95404 1.00102 0.97532 1.21217 0.88123 0.91154 0.94021 1.44546 1.09177 1.39082 1.40333 1.19095 0.97524 1.07852 1.11216 0.90327 1.24794 0.96006 0.99860 0.99690 1.69966 1.04236 1.43672 1.39017 0.86058 0.77503 0.81632 0.80638 1.20494 1.21772 1.21761 1.21138 0.92076 0.95065 0.89043 0.92331 0.91345 0.91553 0.91902 0.88735 0.89167 0.90126 0.89504 0.90161 0.90417 0.89772 0.92157 0.91776 0.93541 0.93790 0.93783 0.95549 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.30 37.16 0.35 -1.29 16 2 C 0.08 0.96 3.70 -26.16 -0.10 0.86 16 3 H 0.12 1.63 6.44 -51.93 -0.33 1.29 16 4 O -0.37 -4.59 11.19 -35.23 -0.39 -4.99 16 5 C 0.05 0.43 7.66 38.21 0.29 0.72 16 6 C -0.14 -1.38 6.47 -24.72 -0.16 -1.54 16 7 C -0.14 -1.56 2.89 -90.24 -0.26 -1.83 16 8 H 0.11 1.14 7.70 -51.93 -0.40 0.74 16 9 C 0.55 8.08 7.27 -10.98 -0.08 8.00 16 10 O -0.55 -9.80 16.03 5.56 0.09 -9.72 16 11 N -0.64 -8.91 3.69 -185.74 -0.68 -9.59 16 12 C 0.12 1.63 7.57 -7.34 -0.06 1.57 16 13 C -0.11 -1.63 1.06 -155.23 -0.16 -1.80 16 14 C 0.12 1.63 8.02 -7.49 -0.06 1.57 16 15 C -0.12 -2.03 6.40 -25.61 -0.16 -2.20 16 16 C 0.18 4.08 5.39 -2.84 -0.02 4.06 16 17 N -0.60 -14.35 3.41 -170.54 -0.58 -14.93 16 18 C -0.23 -6.04 10.28 -15.06 -0.15 -6.19 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -26.05 10.30 55.49 0.57 -25.48 16 22 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.15 2.83 6.70 -3.22 -0.02 2.81 16 27 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.08 0.85 7.87 -51.94 -0.41 0.44 16 34 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 37 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.06 0.99 8.07 -51.92 -0.42 0.57 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 41 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -31.20 350.36 -8.80 -40.00 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.36 Total: -1.32 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.69 Total: 4.47 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.69 Total: -50.00 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.31 Total: -14.70 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.20 -8.80 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073080885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.513 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds