Wall clock time and date at job start Tue Mar 31 2020 07:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87222 * 2 1 4 4 O 1.43751 * 109.87945 * 121.15623 * 2 1 3 5 5 C 1.44379 * 106.97359 * 92.91263 * 4 2 1 6 6 C 1.54995 * 103.49054 * 40.06318 * 5 4 2 7 7 C 1.54093 * 109.88185 * 238.98843 * 2 1 3 8 8 H 1.08999 * 110.49015 * 1.28480 * 7 2 1 9 9 C 1.50707 * 110.49016 * 123.79448 * 7 2 1 10 10 O 1.21281 * 119.99719 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99882 * 179.97438 * 9 7 2 12 12 C 1.47384 * 135.85789 * 359.63880 * 11 9 7 13 13 C 1.52069 * 87.41438 * 154.38642 * 12 11 9 14 14 C 1.47396 * 135.84948 * 179.97438 * 11 9 7 15 15 C 1.53519 * 117.21124 * 267.27699 * 13 12 11 16 16 C 1.54624 * 102.70378 * 262.93087 * 15 13 12 17 17 N 1.47145 * 107.38019 * 339.38360 * 16 15 13 18 18 C 1.36929 * 125.58319 * 179.05235 * 17 16 15 19 19 H 1.07997 * 120.00266 * 180.02562 * 18 17 16 20 20 C 1.38821 * 119.99958 * 0.02562 * 18 17 16 21 21 N 1.31613 * 119.99743 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47114 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47093 * 120.00073 * 22 20 18 25 25 H 1.48504 * 109.46817 * 240.00012 * 22 20 18 26 26 C 1.47755 * 108.83606 * 359.08814 * 17 16 15 27 27 H 1.09002 * 109.47153 * 181.00966 * 1 2 3 28 28 H 1.09001 * 109.46832 * 61.01157 * 1 2 3 29 29 H 1.09004 * 109.47261 * 301.01138 * 1 2 3 30 30 H 1.09001 * 110.61656 * 281.56312 * 5 4 2 31 31 H 1.08995 * 110.75266 * 158.62633 * 5 4 2 32 32 H 1.09009 * 110.90467 * 204.78229 * 6 5 4 33 33 H 1.08988 * 110.93885 * 81.19010 * 6 5 4 34 34 H 1.09005 * 113.54199 * 268.99628 * 12 11 9 35 35 H 1.09003 * 113.54393 * 39.67194 * 12 11 9 36 36 H 1.08999 * 113.54572 * 320.33394 * 14 11 9 37 37 H 1.09007 * 113.54209 * 91.00512 * 14 11 9 38 38 H 1.09008 * 110.76393 * 21.23458 * 15 13 12 39 39 H 1.09002 * 110.76227 * 144.62201 * 15 13 12 40 40 H 1.09000 * 109.86620 * 98.83738 * 16 15 13 41 41 H 1.09005 * 109.86637 * 219.80000 * 16 15 13 42 42 H 0.97002 * 119.99892 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.40645 * 263.50426 * 26 17 16 44 44 H 1.09005 * 110.40184 * 141.08072 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6994 1.1569 5 6 2.2281 -2.0723 0.7621 6 6 2.8325 -1.9515 -0.6600 7 6 2.0540 -0.7466 -1.2420 8 1 1.2238 -1.0907 -1.8588 9 6 2.9718 0.1409 -2.0427 10 8 3.1992 1.2722 -1.6695 11 7 3.5407 -0.3230 -3.1730 12 6 3.5206 -1.5911 -3.9238 13 6 3.8560 -0.7811 -5.1663 14 6 4.4586 0.2153 -4.1930 15 6 2.6805 -0.2928 -6.0245 16 6 2.6030 -1.3645 -7.1364 17 7 3.9102 -2.0381 -7.1895 18 6 4.2441 -3.0643 -8.0323 19 1 5.2340 -3.4942 -7.9940 20 6 3.3101 -3.5520 -8.9361 21 7 2.1035 -3.0284 -8.9824 22 14 3.7658 -4.9515 -10.0864 23 1 5.1717 -5.3595 -9.8369 24 1 2.8641 -6.1060 -9.8428 25 1 3.6240 -4.5010 -11.4943 26 6 4.8032 -1.4264 -6.1837 27 1 -0.3633 -1.0275 0.0181 28 1 -0.3633 0.4981 -0.8989 29 1 -0.3634 0.5295 0.8808 30 1 1.2814 -2.6117 0.7323 31 1 2.9284 -2.5655 1.4362 32 1 2.6432 -2.8542 -1.2411 33 1 3.9003 -1.7385 -0.6125 34 1 4.3092 -2.2838 -3.6296 35 1 2.5373 -2.0600 -3.9601 36 1 4.2584 1.2545 -4.4539 37 1 5.5101 0.0289 -3.9743 38 1 1.7591 -0.2727 -5.4423 39 1 2.8928 0.6889 -6.4479 40 1 1.8228 -2.0879 -6.8999 41 1 2.3896 -0.8898 -8.0942 42 1 1.4509 -3.3690 -9.6142 43 1 5.4358 -0.6694 -6.6474 44 1 5.4139 -2.1907 -5.7029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073080885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:36 Heat of formation + Delta-G solvation = -35.369879 kcal Electronic energy + Delta-G solvation = -24550.717352 eV Core-core repulsion = 21083.290248 eV Total energy + Delta-G solvation = -3467.427103 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.11019 -40.85348 -39.07154 -37.30490 -34.16985 -33.55903 -32.24822 -31.17542 -30.25357 -28.12905 -27.21524 -26.94797 -25.40998 -23.11339 -22.36280 -22.10018 -20.40218 -19.69460 -18.57714 -18.45864 -17.54838 -17.06008 -16.89378 -16.67805 -16.27867 -15.96069 -15.58498 -15.29958 -14.86666 -14.41399 -14.30415 -14.10249 -13.83983 -13.72407 -13.57020 -13.29686 -13.04654 -12.91814 -12.82991 -12.77959 -12.44896 -12.25012 -11.96498 -11.95465 -11.91136 -11.85602 -11.81044 -11.65953 -11.21674 -10.84537 -10.66756 -10.62234 -9.76862 -8.84135 -7.80471 -5.14939 1.48947 1.50071 1.51076 1.60667 1.72637 2.53324 2.86318 3.19678 3.34180 3.43716 3.45627 3.59684 3.73657 3.82971 4.03502 4.08795 4.15066 4.22311 4.24645 4.37245 4.44236 4.54898 4.58171 4.62310 4.63747 4.70644 4.73377 4.81748 4.85831 4.88661 4.94882 4.99832 5.05276 5.12432 5.17894 5.20956 5.24677 5.52406 5.69192 5.81900 5.90558 6.23723 6.66201 7.01477 7.15126 7.82452 8.46504 9.30118 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.003490 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.676534 B = 8020.935835 C = 8321.616916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.079 3.921 3 H 0.088 0.912 4 O -0.393 6.393 5 C 0.043 3.957 6 C -0.137 4.137 7 C -0.133 4.133 8 H 0.126 0.874 9 C 0.547 3.453 10 O -0.585 6.585 11 N -0.638 5.638 12 C 0.129 3.871 13 C -0.100 4.100 14 C 0.123 3.877 15 C -0.102 4.102 16 C 0.190 3.810 17 N -0.625 5.625 18 C -0.234 4.234 19 H 0.087 0.913 20 C -0.066 4.066 21 N -0.952 5.952 22 Si 0.973 3.027 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.298 1.298 26 C 0.152 3.848 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.015 0.985 41 H 0.002 0.998 42 H 0.244 0.756 43 H 0.031 0.969 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 1.373 16.794 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 H 0.106 0.894 4 O -0.312 6.312 5 C -0.033 4.033 6 C -0.175 4.175 7 C -0.154 4.154 8 H 0.143 0.857 9 C 0.338 3.662 10 O -0.466 6.466 11 N -0.371 5.371 12 C 0.007 3.993 13 C -0.102 4.102 14 C 0.000 4.000 15 C -0.141 4.141 16 C 0.065 3.935 17 N -0.352 5.352 18 C -0.363 4.363 19 H 0.104 0.896 20 C -0.258 4.258 21 N -0.602 5.602 22 Si 0.802 3.198 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.226 1.226 26 C 0.026 3.974 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.020 0.980 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.129 2.013 17.244 17.362 hybrid contribution -0.092 -0.573 -1.389 1.505 sum 0.037 1.440 15.855 15.920 Atomic orbital electron populations 1.22230 0.93431 1.03421 1.03041 1.22722 0.95151 0.96954 0.83056 0.89429 1.88902 1.86402 1.22276 1.33646 1.23765 1.01272 0.83512 0.94724 1.23130 0.99931 0.97138 0.97294 1.22717 0.98900 0.96395 0.97359 0.85663 1.20281 0.80437 0.87036 0.78463 1.90658 1.64862 1.21756 1.69302 1.49780 1.46693 1.17820 1.22844 1.22941 1.03517 0.87054 0.85826 1.21998 0.97483 0.97218 0.93494 1.22806 0.95162 0.98832 0.83180 1.22262 0.97090 0.98489 0.96219 1.20908 0.87316 0.91381 0.93891 1.44827 1.10388 1.38824 1.41119 1.19501 0.97655 1.08022 1.11142 0.89566 1.25573 0.96169 1.02469 1.01633 1.70182 1.05137 1.45110 1.39746 0.85079 0.77825 0.78723 0.78133 1.18818 1.22086 1.22556 1.21298 0.92059 0.95426 0.88572 0.90888 0.91085 0.91430 0.90072 0.87254 0.87027 0.91029 0.87300 0.89827 0.90677 0.87516 0.90961 0.91166 0.96696 0.97958 0.94618 0.95080 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.30 71.98 0.67 -2.23 16 2 C 0.08 1.81 3.70 30.96 0.11 1.92 16 3 H 0.09 2.50 6.44 -2.38 -0.02 2.48 16 4 O -0.39 -9.22 11.19 -148.98 -1.67 -10.89 16 5 C 0.04 0.68 7.66 72.66 0.56 1.24 16 6 C -0.14 -2.26 6.47 31.90 0.21 -2.05 16 7 C -0.13 -2.78 2.89 -10.55 -0.03 -2.81 16 8 H 0.13 2.24 7.70 -2.39 -0.02 2.22 16 9 C 0.55 15.19 7.27 87.66 0.64 15.83 16 10 O -0.58 -20.79 16.03 -3.03 -0.05 -20.84 16 11 N -0.64 -16.17 3.69 -859.94 -3.17 -19.35 16 12 C 0.13 3.06 7.57 83.76 0.63 3.69 16 13 C -0.10 -2.88 1.06 -52.63 -0.06 -2.93 16 14 C 0.12 3.05 8.02 83.66 0.67 3.72 16 15 C -0.10 -3.47 6.40 31.32 0.20 -3.27 16 16 C 0.19 8.80 5.39 86.81 0.47 9.27 16 17 N -0.63 -29.44 3.41 -693.46 -2.36 -31.81 16 18 C -0.23 -12.28 10.28 84.04 0.86 -11.41 16 19 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.07 -3.57 5.49 84.87 0.47 -3.11 16 21 N -0.95 -55.36 10.30 21.65 0.22 -55.14 16 22 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 26 C 0.15 5.28 6.70 86.23 0.58 5.86 16 27 H 0.07 1.07 8.11 -2.39 -0.02 1.06 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.08 0.99 8.11 -2.39 -0.02 0.97 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.07 1.32 7.87 -2.39 -0.02 1.31 16 34 H 0.11 2.19 8.06 -2.38 -0.02 2.18 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 37 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 41 H 0.00 0.12 7.49 -2.38 -0.02 0.10 16 42 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.87 8.00 -2.38 -0.02 1.85 16 Total: -1.00 -69.17 350.36 1.95 -67.22 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.97 Total: 11.08 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 5.98 Total: 13.72 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -5.31 Total: -106.29 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.72 Total: -31.73 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.17 1.95 -67.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073080885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.848 kcal (2) G-P(sol) polarization free energy of solvation -69.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds