Wall clock time and date at job start Tue Mar 31 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.67767 * 2 1 4 4 O 1.44387 * 110.61522 * 237.03274 * 2 1 3 5 5 C 1.43741 * 106.97547 * 201.44083 * 4 2 1 6 6 C 1.54099 * 107.29588 * 26.51177 * 5 4 2 7 7 C 1.54811 * 104.18670 * 357.97629 * 6 5 4 8 8 H 1.09001 * 110.91284 * 97.31221 * 7 6 5 9 9 C 1.50705 * 110.90472 * 220.92029 * 7 6 5 10 10 O 1.21284 * 120.00318 * 118.54580 * 9 7 6 11 11 N 1.34780 * 119.99666 * 298.53853 * 9 7 6 12 12 C 1.47351 * 135.87823 * 359.63353 * 11 9 7 13 13 C 1.52223 * 87.48263 * 154.25027 * 12 11 9 14 14 C 1.47351 * 135.87664 * 180.02562 * 11 9 7 15 15 C 1.53722 * 116.41292 * 142.35395 * 13 12 11 16 16 C 1.55177 * 101.38852 * 165.06894 * 15 13 12 17 17 N 1.47557 * 105.03207 * 324.50767 * 16 15 13 18 18 C 1.36944 * 125.66154 * 203.93061 * 17 16 15 19 19 H 1.07997 * 119.99714 * 161.47165 * 18 17 16 20 20 C 1.38816 * 119.99701 * 341.48189 * 18 17 16 21 21 N 1.31609 * 119.99839 * 157.58119 * 20 18 17 22 22 Si 1.86806 * 119.99907 * 337.57193 * 20 18 17 23 23 H 1.48497 * 109.46723 * 84.53654 * 22 20 18 24 24 H 1.48496 * 109.46768 * 204.53833 * 22 20 18 25 25 H 1.48501 * 109.47238 * 324.54234 * 22 20 18 26 26 C 1.47399 * 108.68167 * 23.89322 * 17 16 15 27 27 H 1.08996 * 109.47778 * 181.50985 * 1 2 3 28 28 H 1.09000 * 109.46667 * 301.51053 * 1 2 3 29 29 H 1.09000 * 109.47189 * 61.50345 * 1 2 3 30 30 H 1.09001 * 109.87828 * 267.09282 * 5 4 2 31 31 H 1.09001 * 110.00539 * 146.01235 * 5 4 2 32 32 H 1.09004 * 110.48382 * 116.64243 * 6 5 4 33 33 H 1.08993 * 110.49134 * 239.29519 * 6 5 4 34 34 H 1.08992 * 113.53560 * 268.88096 * 12 11 9 35 35 H 1.09005 * 113.53381 * 39.53330 * 12 11 9 36 36 H 1.09000 * 113.53123 * 320.47367 * 14 11 9 37 37 H 1.09004 * 113.53237 * 91.11868 * 14 11 9 38 38 H 1.09001 * 111.03825 * 283.09535 * 15 13 12 39 39 H 1.08998 * 111.04041 * 47.04274 * 15 13 12 40 40 H 1.08998 * 110.32948 * 205.62016 * 16 15 13 41 41 H 1.08998 * 110.33192 * 83.39209 * 16 15 13 42 42 H 0.97005 * 119.99893 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.99345 * 238.52121 * 26 17 16 44 44 H 1.09000 * 110.03107 * 117.20916 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 8 2.0384 -0.7354 -1.1338 5 6 3.3838 -1.1256 -0.8119 6 6 3.4795 -1.2168 0.7234 7 6 2.0758 -0.7895 1.2171 8 1 1.4549 -1.6607 1.4258 9 6 2.1797 0.0978 2.4308 10 8 1.7553 1.2333 2.3901 11 7 2.7442 -0.3705 3.5615 12 6 3.3477 -1.6433 3.9939 13 6 4.1569 -0.8398 5.0022 14 6 3.0205 0.1650 4.9062 15 6 4.3807 -1.4931 6.3756 16 6 5.5210 -0.6123 6.9517 17 7 6.3628 -0.2678 5.7898 18 6 7.6856 0.0831 5.8383 19 1 8.2920 0.0276 4.9463 20 6 8.2470 0.5100 7.0339 21 7 9.5476 0.4267 7.2169 22 14 7.1563 1.2030 8.3830 23 1 6.6035 0.0885 9.1937 24 1 7.9568 2.0998 9.2548 25 1 6.0417 1.9714 7.7726 26 6 5.5438 -0.3650 4.5681 27 1 -0.3634 -1.0272 0.0271 28 1 -0.3633 0.5371 0.8762 29 1 -0.3633 0.4903 -0.9032 30 1 4.0853 -0.3784 -1.1831 31 1 3.6069 -2.0959 -1.2555 32 1 3.6973 -2.2393 1.0319 33 1 4.2406 -0.5334 1.0996 34 1 2.6358 -2.3284 4.4542 35 1 3.9568 -2.1194 3.2255 36 1 3.3556 1.2022 4.9012 37 1 2.2173 -0.0167 5.6205 38 1 3.4843 -1.4252 6.9920 39 1 4.7025 -2.5290 6.2684 40 1 6.0995 -1.1739 7.6852 41 1 5.1106 0.2910 7.4030 42 1 9.9400 0.7254 8.0523 43 1 5.9857 -1.0853 3.8796 44 1 5.4704 0.6114 4.0892 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073080886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:39 Heat of formation + Delta-G solvation = -11.639629 kcal Electronic energy + Delta-G solvation = -24693.130872 eV Core-core repulsion = 21226.732790 eV Total energy + Delta-G solvation = -3466.398082 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11025 -39.86212 -38.03313 -36.04007 -32.86357 -32.30749 -31.75364 -30.22108 -28.81737 -27.13574 -26.22954 -25.84209 -23.59438 -22.28355 -21.76563 -21.03417 -19.46116 -18.49085 -17.52849 -16.84833 -16.36119 -16.32611 -15.63123 -15.33501 -15.21914 -15.16117 -14.33915 -14.07986 -13.99475 -13.52736 -13.29729 -12.95836 -12.89223 -12.60831 -12.54398 -12.19024 -12.12664 -11.77795 -11.58842 -11.47281 -11.44600 -11.31302 -11.08468 -10.96690 -10.70783 -10.41098 -10.23144 -10.00278 -9.92646 -9.68325 -9.46733 -8.77246 -8.72098 -7.10379 -5.98449 -3.29391 2.49811 2.67765 3.30767 3.46096 3.47751 3.55364 4.12928 4.29987 4.35041 4.39053 4.51200 4.66568 4.74930 4.81235 4.90594 4.93071 5.15132 5.19723 5.22430 5.29464 5.31533 5.33759 5.40858 5.43467 5.53011 5.60126 5.67069 5.69696 5.75910 5.79662 5.84201 5.87171 5.96466 6.02819 6.20575 6.44845 6.47285 6.56156 6.65007 6.67995 7.62709 7.67050 8.03696 8.26831 8.78355 9.64331 10.11892 11.17600 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.003804 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.621481 B = 7359.144645 C = 7745.706431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.093 3.907 3 H 0.084 0.916 4 O -0.375 6.375 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.135 4.135 8 H 0.110 0.890 9 C 0.553 3.447 10 O -0.540 6.540 11 N -0.640 5.640 12 C 0.113 3.887 13 C -0.107 4.107 14 C 0.119 3.881 15 C -0.114 4.114 16 C 0.111 3.889 17 N -0.609 5.609 18 C -0.243 4.243 19 H 0.092 0.908 20 C 0.023 3.977 21 N -0.908 5.908 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.302 1.302 25 H -0.277 1.277 26 C 0.165 3.835 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.039 0.961 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.850 -7.116 -10.324 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 H 0.102 0.898 4 O -0.294 6.294 5 C -0.028 4.028 6 C -0.185 4.185 7 C -0.156 4.156 8 H 0.128 0.872 9 C 0.342 3.658 10 O -0.417 6.417 11 N -0.375 5.375 12 C -0.010 4.010 13 C -0.108 4.108 14 C -0.003 4.003 15 C -0.153 4.153 16 C -0.014 4.014 17 N -0.336 5.336 18 C -0.370 4.370 19 H 0.110 0.890 20 C -0.176 4.176 21 N -0.551 5.551 22 Si 0.713 3.287 23 H -0.211 1.211 24 H -0.230 1.230 25 H -0.202 1.202 26 C 0.040 3.960 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.040 -6.395 -10.666 21.095 hybrid contribution -0.334 0.445 1.152 1.279 sum -17.374 -5.950 -9.514 20.683 Atomic orbital electron populations 1.21756 0.92631 1.02576 1.03068 1.22947 0.95572 0.95498 0.82442 0.89827 1.88882 1.27793 1.73854 1.38908 1.23123 0.84719 1.00828 0.94104 1.22961 0.95929 1.03465 0.96133 1.22885 0.99046 0.99615 0.94095 0.87213 1.19732 0.76202 0.87336 0.82536 1.90714 1.48268 1.19392 1.83367 1.49739 1.59479 1.16910 1.11413 1.23015 0.94383 0.87675 0.95950 1.22202 0.95520 0.96462 0.96634 1.22889 0.95413 1.00118 0.81905 1.22487 0.99115 0.99794 0.93911 1.22016 0.91605 0.95838 0.91953 1.44887 1.07877 1.80291 1.00507 1.18620 0.81395 1.39054 0.97951 0.89046 1.24989 0.95291 0.99906 0.97375 1.69836 1.10190 1.49138 1.25963 0.86985 0.80060 0.79516 0.82148 1.21145 1.23018 1.20246 1.20792 0.86540 0.98230 0.90458 0.92071 0.90570 0.91581 0.91961 0.89452 0.89482 0.89732 0.89359 0.89958 0.89957 0.89680 0.91102 0.90251 0.92086 0.95628 0.92654 0.94285 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.66 37.16 0.36 -1.05 16 2 C 0.09 1.06 3.03 -25.68 -0.08 0.98 16 3 H 0.08 1.09 7.53 -51.93 -0.39 0.70 16 4 O -0.37 -4.36 11.22 -35.23 -0.40 -4.76 16 5 C 0.05 0.46 7.70 37.73 0.29 0.75 16 6 C -0.15 -1.38 5.68 -25.20 -0.14 -1.52 16 7 C -0.13 -1.43 2.80 -89.76 -0.25 -1.68 16 8 H 0.11 0.99 8.05 -51.93 -0.42 0.57 16 9 C 0.55 7.58 7.30 -10.98 -0.08 7.50 16 10 O -0.54 -9.31 16.47 5.55 0.09 -9.22 16 11 N -0.64 -8.21 3.67 -185.49 -0.68 -8.89 16 12 C 0.11 1.18 7.57 -7.47 -0.06 1.13 16 13 C -0.11 -1.49 1.05 -155.11 -0.16 -1.65 16 14 C 0.12 1.62 7.90 -7.59 -0.06 1.56 16 15 C -0.11 -1.62 6.49 -25.20 -0.16 -1.79 16 16 C 0.11 2.24 4.71 -2.31 -0.01 2.23 16 17 N -0.61 -14.05 3.22 -170.37 -0.55 -14.60 16 18 C -0.24 -6.74 10.58 -15.05 -0.16 -6.90 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.02 0.66 5.43 -17.43 -0.09 0.57 16 21 N -0.91 -27.63 13.97 55.49 0.78 -26.86 16 22 Si 0.88 22.17 24.27 -169.99 -4.13 18.05 16 23 H -0.28 -6.77 6.49 56.52 0.37 -6.41 16 24 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 25 H -0.28 -6.89 6.66 56.52 0.38 -6.51 16 26 C 0.17 3.04 6.78 -3.61 -0.02 3.02 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.66 7.62 -51.93 -0.40 0.26 16 33 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.77 6.91 -51.93 -0.36 0.42 16 36 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 37 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.07 0.83 7.98 -51.93 -0.41 0.41 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.32 6.66 -51.93 -0.35 0.98 16 41 H 0.03 0.55 5.56 -51.93 -0.29 0.26 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 44 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -33.04 343.24 -7.60 -40.65 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -7.26 Total: -2.67 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.63 Total: 3.13 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.45 Total: -50.34 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.30 Total: -13.98 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.13 Total: 18.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.04 -7.60 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073080886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.006 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds