Wall clock time and date at job start Tue Mar 31 2020 07:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.67767 * 2 1 4 4 O 1.44387 * 110.61522 * 237.03274 * 2 1 3 5 5 C 1.43741 * 106.97547 * 201.44083 * 4 2 1 6 6 C 1.54099 * 107.29588 * 26.51177 * 5 4 2 7 7 C 1.54811 * 104.18670 * 357.97629 * 6 5 4 8 8 H 1.09001 * 110.91284 * 97.31221 * 7 6 5 9 9 C 1.50705 * 110.90472 * 220.92029 * 7 6 5 10 10 O 1.21284 * 120.00318 * 118.54580 * 9 7 6 11 11 N 1.34780 * 119.99666 * 298.53853 * 9 7 6 12 12 C 1.47351 * 135.87823 * 359.63353 * 11 9 7 13 13 C 1.52223 * 87.48263 * 154.25027 * 12 11 9 14 14 C 1.47351 * 135.87664 * 180.02562 * 11 9 7 15 15 C 1.53722 * 116.41292 * 142.35395 * 13 12 11 16 16 C 1.55177 * 101.38852 * 165.06894 * 15 13 12 17 17 N 1.47557 * 105.03207 * 324.50767 * 16 15 13 18 18 C 1.36944 * 125.66154 * 203.93061 * 17 16 15 19 19 H 1.07997 * 119.99714 * 161.47165 * 18 17 16 20 20 C 1.38816 * 119.99701 * 341.48189 * 18 17 16 21 21 N 1.31609 * 119.99839 * 157.58119 * 20 18 17 22 22 Si 1.86806 * 119.99907 * 337.57193 * 20 18 17 23 23 H 1.48497 * 109.46723 * 84.53654 * 22 20 18 24 24 H 1.48496 * 109.46768 * 204.53833 * 22 20 18 25 25 H 1.48501 * 109.47238 * 324.54234 * 22 20 18 26 26 C 1.47399 * 108.68167 * 23.89322 * 17 16 15 27 27 H 1.08996 * 109.47778 * 181.50985 * 1 2 3 28 28 H 1.09000 * 109.46667 * 301.51053 * 1 2 3 29 29 H 1.09000 * 109.47189 * 61.50345 * 1 2 3 30 30 H 1.09001 * 109.87828 * 267.09282 * 5 4 2 31 31 H 1.09001 * 110.00539 * 146.01235 * 5 4 2 32 32 H 1.09004 * 110.48382 * 116.64243 * 6 5 4 33 33 H 1.08993 * 110.49134 * 239.29519 * 6 5 4 34 34 H 1.08992 * 113.53560 * 268.88096 * 12 11 9 35 35 H 1.09005 * 113.53381 * 39.53330 * 12 11 9 36 36 H 1.09000 * 113.53123 * 320.47367 * 14 11 9 37 37 H 1.09004 * 113.53237 * 91.11868 * 14 11 9 38 38 H 1.09001 * 111.03825 * 283.09535 * 15 13 12 39 39 H 1.08998 * 111.04041 * 47.04274 * 15 13 12 40 40 H 1.08998 * 110.32948 * 205.62016 * 16 15 13 41 41 H 1.08998 * 110.33192 * 83.39209 * 16 15 13 42 42 H 0.97005 * 119.99893 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.99345 * 238.52121 * 26 17 16 44 44 H 1.09000 * 110.03107 * 117.20916 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 8 2.0384 -0.7354 -1.1338 5 6 3.3838 -1.1256 -0.8119 6 6 3.4795 -1.2168 0.7234 7 6 2.0758 -0.7895 1.2171 8 1 1.4549 -1.6607 1.4258 9 6 2.1797 0.0978 2.4308 10 8 1.7553 1.2333 2.3901 11 7 2.7442 -0.3705 3.5615 12 6 3.3477 -1.6433 3.9939 13 6 4.1569 -0.8398 5.0022 14 6 3.0205 0.1650 4.9062 15 6 4.3807 -1.4931 6.3756 16 6 5.5210 -0.6123 6.9517 17 7 6.3628 -0.2678 5.7898 18 6 7.6856 0.0831 5.8383 19 1 8.2920 0.0276 4.9463 20 6 8.2470 0.5100 7.0339 21 7 9.5476 0.4267 7.2169 22 14 7.1563 1.2030 8.3830 23 1 6.6035 0.0885 9.1937 24 1 7.9568 2.0998 9.2548 25 1 6.0417 1.9714 7.7726 26 6 5.5438 -0.3650 4.5681 27 1 -0.3634 -1.0272 0.0271 28 1 -0.3633 0.5371 0.8762 29 1 -0.3633 0.4903 -0.9032 30 1 4.0853 -0.3784 -1.1831 31 1 3.6069 -2.0959 -1.2555 32 1 3.6973 -2.2393 1.0319 33 1 4.2406 -0.5334 1.0996 34 1 2.6358 -2.3284 4.4542 35 1 3.9568 -2.1194 3.2255 36 1 3.3556 1.2022 4.9012 37 1 2.2173 -0.0167 5.6205 38 1 3.4843 -1.4252 6.9920 39 1 4.7025 -2.5290 6.2684 40 1 6.0995 -1.1739 7.6852 41 1 5.1106 0.2910 7.4030 42 1 9.9400 0.7254 8.0523 43 1 5.9857 -1.0853 3.8796 44 1 5.4704 0.6114 4.0892 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073080886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:38 Heat of formation + Delta-G solvation = -35.571674 kcal Electronic energy + Delta-G solvation = -24694.168643 eV Core-core repulsion = 21226.732790 eV Total energy + Delta-G solvation = -3467.435854 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.15386 -40.82239 -39.13454 -37.51870 -34.37772 -33.63295 -32.57400 -31.73844 -30.14608 -28.35925 -27.35941 -26.85145 -25.14021 -23.12058 -22.74604 -22.63746 -20.53307 -19.64274 -18.85819 -18.30674 -17.45406 -17.23805 -17.12652 -16.68796 -16.30100 -16.19861 -15.41431 -15.36925 -15.16928 -14.90594 -14.69497 -14.19560 -14.15879 -13.78318 -13.43000 -13.34206 -13.24292 -13.04060 -12.98000 -12.85874 -12.75777 -12.32744 -12.18379 -12.12044 -11.97190 -11.89029 -11.67702 -11.57089 -11.19150 -10.89206 -10.80564 -10.65650 -9.77792 -9.06575 -8.19357 -5.45615 1.28337 1.39125 1.46949 1.49131 1.70556 2.39865 2.74052 3.03410 3.16596 3.25671 3.44354 3.51483 3.56178 3.65053 3.92111 3.96508 4.05063 4.12158 4.15932 4.33736 4.37301 4.43893 4.55348 4.58159 4.60931 4.68081 4.71014 4.75229 4.83257 4.84531 4.87023 4.91037 5.00621 5.04525 5.05342 5.08100 5.18151 5.20468 5.29943 5.66565 5.84333 6.08623 6.66743 6.75875 7.00990 7.52805 8.08789 9.00676 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.003804 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.621481 B = 7359.144645 C = 7745.706431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.055 0.945 4 O -0.386 6.386 5 C 0.044 3.956 6 C -0.142 4.142 7 C -0.125 4.125 8 H 0.138 0.862 9 C 0.548 3.452 10 O -0.586 6.586 11 N -0.643 5.643 12 C 0.129 3.871 13 C -0.104 4.104 14 C 0.114 3.886 15 C -0.094 4.094 16 C 0.097 3.903 17 N -0.628 5.628 18 C -0.236 4.236 19 H 0.057 0.943 20 C -0.036 4.036 21 N -0.957 5.957 22 Si 0.947 3.053 23 H -0.260 1.260 24 H -0.311 1.311 25 H -0.276 1.276 26 C 0.162 3.838 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.018 0.982 42 H 0.262 0.738 43 H 0.045 0.955 44 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.906 -9.934 -10.051 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.031 3.969 3 H 0.073 0.927 4 O -0.306 6.306 5 C -0.033 4.033 6 C -0.180 4.180 7 C -0.146 4.146 8 H 0.156 0.844 9 C 0.338 3.662 10 O -0.467 6.467 11 N -0.377 5.377 12 C 0.008 3.992 13 C -0.105 4.105 14 C -0.008 4.008 15 C -0.132 4.132 16 C -0.027 4.027 17 N -0.355 5.355 18 C -0.364 4.364 19 H 0.075 0.925 20 C -0.231 4.231 21 N -0.604 5.604 22 Si 0.775 3.225 23 H -0.185 1.185 24 H -0.240 1.240 25 H -0.202 1.202 26 C 0.038 3.962 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -20.131 -9.257 -10.397 24.476 hybrid contribution 0.691 1.355 0.954 1.796 sum -19.440 -7.902 -9.444 23.012 Atomic orbital electron populations 1.21718 0.91513 1.03563 1.02789 1.22905 0.96520 0.94396 0.83110 0.92665 1.88871 1.28805 1.73739 1.39200 1.23293 0.83714 1.01897 0.94363 1.22970 0.94569 1.04558 0.95924 1.22874 1.00158 0.99533 0.92073 0.84400 1.20269 0.75479 0.87078 0.83325 1.90694 1.50425 1.21494 1.84104 1.49806 1.58933 1.18005 1.10929 1.23177 0.94257 0.86750 0.95043 1.21999 0.92963 0.97732 0.97794 1.22991 0.96249 0.98259 0.83304 1.22455 0.98017 0.99247 0.93472 1.22192 0.92995 0.96548 0.90983 1.45027 1.07036 1.80099 1.03377 1.18574 0.83620 1.37661 0.96592 0.92542 1.25621 0.96424 1.00973 1.00048 1.69962 1.12108 1.51373 1.26911 0.85948 0.77998 0.79061 0.79461 1.18517 1.23977 1.20220 1.20890 0.89129 0.97341 0.88881 0.90311 0.91420 0.91388 0.92547 0.87000 0.86552 0.91694 0.84962 0.88318 0.93359 0.86473 0.87103 0.88299 0.93820 0.96400 0.92857 0.93669 0.97369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.66 71.98 0.70 -1.85 16 2 C 0.09 1.94 3.03 31.28 0.09 2.03 16 3 H 0.06 1.50 7.53 -2.39 -0.02 1.48 16 4 O -0.39 -8.37 11.22 -148.98 -1.67 -10.04 16 5 C 0.04 0.73 7.70 72.35 0.56 1.29 16 6 C -0.14 -2.30 5.68 31.58 0.18 -2.12 16 7 C -0.13 -2.34 2.80 -10.24 -0.03 -2.37 16 8 H 0.14 1.84 8.05 -2.39 -0.02 1.82 16 9 C 0.55 14.14 7.30 87.66 0.64 14.78 16 10 O -0.59 -20.35 16.47 -3.04 -0.05 -20.40 16 11 N -0.64 -14.55 3.67 -859.16 -3.15 -17.70 16 12 C 0.13 2.02 7.57 83.70 0.63 2.65 16 13 C -0.10 -2.53 1.05 -52.56 -0.05 -2.58 16 14 C 0.11 2.81 7.90 83.62 0.66 3.47 16 15 C -0.09 -2.21 6.49 31.58 0.21 -2.01 16 16 C 0.10 3.72 4.71 86.92 0.41 4.13 16 17 N -0.63 -28.98 3.22 -692.93 -2.23 -31.21 16 18 C -0.24 -13.50 10.58 84.03 0.89 -12.61 16 19 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 20 C -0.04 -2.13 5.43 84.86 0.46 -1.67 16 21 N -0.96 -60.39 13.97 21.65 0.30 -60.09 16 22 Si 0.95 46.66 24.27 68.60 1.66 48.32 16 23 H -0.26 -11.64 6.49 99.48 0.65 -11.00 16 24 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 25 H -0.28 -13.41 6.66 99.48 0.66 -12.74 16 26 C 0.16 5.86 6.78 86.17 0.58 6.45 16 27 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.12 1.20 7.62 -2.39 -0.02 1.19 16 33 H 0.06 1.31 7.85 -2.39 -0.02 1.30 16 34 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.30 6.91 -2.38 -0.02 1.28 16 36 H 0.05 1.52 8.07 -2.39 -0.02 1.50 16 37 H 0.12 2.17 8.04 -2.38 -0.02 2.16 16 38 H 0.11 1.84 7.98 -2.39 -0.02 1.82 16 39 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.04 1.81 6.66 -2.39 -0.02 1.80 16 41 H 0.02 0.73 5.56 -2.39 -0.01 0.72 16 42 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 43 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 44 H 0.01 0.34 7.92 -2.39 -0.02 0.32 16 Total: -1.00 -77.47 343.24 1.66 -75.82 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 0.87 Total: 5.72 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.92 Total: 9.59 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -5.08 Total: -109.00 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.72 Total: -30.44 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.66 Total: 48.32 kcal Total: -77.47 1.66 -75.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073080886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.246 kcal (2) G-P(sol) polarization free energy of solvation -77.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds