Wall clock time and date at job start Tue Mar 31 2020 07:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.42016 * 2 1 4 4 O 1.44423 * 110.36992 * 122.30678 * 2 1 3 5 5 C 1.44435 * 105.27124 * 159.34630 * 4 2 1 6 6 C 1.54486 * 104.80217 * 319.48882 * 5 4 2 7 7 C 1.54473 * 110.37403 * 237.69158 * 2 1 3 8 8 H 1.09006 * 110.62828 * 98.48440 * 7 2 1 9 9 C 1.50701 * 110.51147 * 335.83444 * 7 2 1 10 10 O 1.21276 * 119.99987 * 282.63745 * 9 7 2 11 11 N 1.34776 * 120.00083 * 102.63481 * 9 7 2 12 12 C 1.47853 * 134.36752 * 179.97438 * 11 9 7 13 13 C 1.52558 * 85.66487 * 156.35209 * 12 11 9 14 14 C 1.47856 * 134.36223 * 359.97355 * 11 9 7 15 15 C 1.53863 * 115.93733 * 265.04029 * 13 12 11 16 16 C 1.55399 * 101.30548 * 196.14810 * 15 13 12 17 17 N 1.47545 * 104.88458 * 35.97060 * 16 15 13 18 18 C 1.36938 * 125.65957 * 155.98461 * 17 16 15 19 19 H 1.08001 * 120.00143 * 179.69420 * 18 17 16 20 20 C 1.38816 * 119.99901 * 359.68940 * 18 17 16 21 21 N 1.31623 * 120.00021 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99870 * 179.72605 * 20 18 17 23 23 H 1.48499 * 109.47490 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47237 * 120.00723 * 22 20 18 25 25 H 1.48507 * 109.47014 * 240.00283 * 22 20 18 26 26 C 1.47367 * 108.68137 * 335.72161 * 17 16 15 27 27 H 1.08998 * 109.47383 * 188.09232 * 1 2 3 28 28 H 1.09003 * 109.47389 * 308.09807 * 1 2 3 29 29 H 1.09004 * 109.47118 * 68.09114 * 1 2 3 30 30 H 1.08997 * 110.36915 * 200.66125 * 5 4 2 31 31 H 1.08997 * 110.37587 * 78.31996 * 5 4 2 32 32 H 1.09001 * 110.50763 * 265.33970 * 6 5 4 33 33 H 1.08997 * 110.62338 * 142.68279 * 6 5 4 34 34 H 1.09005 * 113.83327 * 42.16796 * 12 11 9 35 35 H 1.08993 * 113.84627 * 270.53801 * 12 11 9 36 36 H 1.09008 * 113.83763 * 89.46820 * 14 11 9 37 37 H 1.08993 * 113.84626 * 317.83781 * 14 11 9 38 38 H 1.08998 * 111.03278 * 314.37587 * 15 13 12 39 39 H 1.08995 * 111.03695 * 78.26815 * 15 13 12 40 40 H 1.09000 * 110.48528 * 277.08215 * 16 15 13 41 41 H 1.09001 * 110.30776 * 154.76920 * 16 15 13 42 42 H 0.96994 * 120.00105 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.98243 * 121.64519 * 26 17 16 44 44 H 1.08998 * 109.97780 * 242.93650 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7236 1.1443 5 6 3.3874 -1.0870 0.7995 6 6 3.3178 -1.5056 -0.6859 7 6 2.0678 -0.7740 -1.2239 8 1 2.3426 -0.0856 -2.0232 9 6 1.0444 -1.7665 -1.7124 10 8 0.8821 -2.8118 -1.1192 11 7 0.3095 -1.4926 -2.8084 12 6 -0.7500 -2.2105 -3.5488 13 6 -1.1775 -0.8321 -4.0433 14 6 0.2415 -0.3542 -3.7495 15 6 -2.2977 -0.1470 -3.2413 16 6 -2.7473 0.9623 -4.2325 17 7 -2.6273 0.3480 -5.5686 18 6 -3.3158 0.7317 -6.6884 19 1 -3.1526 0.2189 -7.6248 20 6 -4.2237 1.7796 -6.6199 21 7 -4.4223 2.4047 -5.4787 22 14 -5.1573 2.3079 -8.1491 23 1 -4.7519 1.4558 -9.2957 24 1 -6.6161 2.1599 -7.9143 25 1 -4.8464 3.7280 -8.4529 26 6 -1.6388 -0.7428 -5.4996 27 1 -0.3634 -1.0174 0.1447 28 1 -0.3634 0.6341 0.8087 29 1 -0.3633 0.3835 -0.9535 30 1 3.7241 -1.9222 1.4137 31 1 4.0525 -0.2323 0.9221 32 1 3.1955 -2.5852 -0.7731 33 1 4.2106 -1.1789 -1.2191 34 1 -1.4849 -2.6956 -2.9063 35 1 -0.3726 -2.8634 -4.3357 36 1 0.9206 -0.4426 -4.5976 37 1 0.2867 0.6212 -3.2652 38 1 -3.1103 -0.8425 -3.0316 39 1 -1.9098 0.2874 -2.3200 40 1 -2.0936 1.8310 -4.1549 41 1 -3.7814 1.2469 -4.0380 42 1 -5.0563 3.1372 -5.4310 43 1 -2.0996 -1.6828 -5.8027 44 1 -0.7904 -0.5180 -6.1460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073080888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:45 Heat of formation + Delta-G solvation = -14.252158 kcal Electronic energy + Delta-G solvation = -24863.113549 eV Core-core repulsion = 21396.602179 eV Total energy + Delta-G solvation = -3466.511370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96182 -39.69117 -37.70516 -35.61300 -32.73831 -32.12490 -31.67996 -29.57529 -28.61184 -26.73409 -26.17907 -25.49091 -23.77927 -22.27394 -21.72781 -20.39875 -18.90568 -18.32029 -17.35830 -16.76035 -16.43265 -16.06194 -15.67406 -15.48623 -14.99978 -14.80247 -14.32896 -13.86939 -13.70975 -13.26350 -12.81817 -12.61618 -12.46415 -12.32997 -12.22137 -12.07557 -11.97403 -11.69563 -11.37370 -11.29082 -11.14427 -11.08543 -10.98039 -10.83976 -10.46192 -10.11336 -10.01507 -9.97437 -9.91591 -9.69062 -9.44773 -8.70683 -8.55046 -6.89343 -5.70140 -3.12065 2.62549 2.84176 3.36807 3.42678 3.44956 3.70405 4.22296 4.34709 4.44635 4.57333 4.61687 4.85219 4.90145 4.99161 5.09426 5.15064 5.20700 5.26008 5.38963 5.44610 5.48069 5.54216 5.56558 5.60127 5.69816 5.77089 5.78436 5.81027 5.85893 5.95498 6.11152 6.15379 6.25905 6.45067 6.55091 6.64645 6.67596 6.69862 7.43648 7.57898 7.78359 7.80710 8.22802 8.30745 9.16860 9.77519 10.41806 11.33696 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034556 B = 0.003494 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.093416 B = 8012.842080 C = 8364.851016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.091 3.909 3 H 0.079 0.921 4 O -0.364 6.364 5 C 0.049 3.951 6 C -0.141 4.141 7 C -0.139 4.139 8 H 0.100 0.900 9 C 0.549 3.451 10 O -0.541 6.541 11 N -0.640 5.640 12 C 0.121 3.879 13 C -0.101 4.101 14 C 0.116 3.884 15 C -0.120 4.120 16 C 0.154 3.846 17 N -0.604 5.604 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.151 3.849 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.013 0.987 41 H 0.107 0.893 42 H 0.252 0.748 43 H 0.031 0.969 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.226 -4.469 8.357 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.097 0.903 4 O -0.283 6.283 5 C -0.028 4.028 6 C -0.179 4.179 7 C -0.161 4.161 8 H 0.118 0.882 9 C 0.338 3.662 10 O -0.419 6.419 11 N -0.375 5.375 12 C -0.001 4.001 13 C -0.102 4.102 14 C -0.007 4.007 15 C -0.158 4.158 16 C 0.029 3.971 17 N -0.330 5.330 18 C -0.351 4.351 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.025 3.975 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.031 0.969 41 H 0.125 0.875 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 13.986 -4.968 8.975 17.344 hybrid contribution -0.160 0.427 -1.135 1.223 sum 13.826 -4.541 7.840 16.530 Atomic orbital electron populations 1.21998 0.92551 1.03874 1.03153 1.22840 0.95987 0.94628 0.83256 0.90302 1.89188 1.26937 1.74503 1.37690 1.23358 0.84823 0.99781 0.94853 1.22937 0.96119 1.02540 0.96299 1.22749 0.95561 0.97834 0.99977 0.88183 1.19791 0.80415 0.86769 0.79238 1.90689 1.67979 1.26570 1.56652 1.50234 1.38924 1.22595 1.25709 1.23048 0.87845 0.95679 0.93516 1.22458 0.94602 0.94560 0.98611 1.23191 0.96064 0.90507 0.90889 1.22772 0.95654 0.99603 0.97788 1.22041 1.03059 0.90294 0.81684 1.44595 1.45403 1.35779 1.07243 1.19120 1.15712 1.12515 0.87734 0.90398 1.24783 1.00023 0.98438 0.97371 1.69792 1.38734 1.25237 1.23257 0.86007 0.79557 0.78135 0.81833 1.20533 1.21748 1.21767 1.20993 0.92528 0.92789 0.91231 0.91059 0.91392 0.90430 0.88927 0.92225 0.89323 0.90037 0.90051 0.89860 0.89496 0.89897 0.91490 0.92234 0.96941 0.87505 0.93753 0.95125 0.95649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.55 37.16 0.32 -1.69 16 2 C 0.09 1.07 3.83 -25.96 -0.10 0.97 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 O -0.36 -4.85 11.34 -35.23 -0.40 -5.25 16 5 C 0.05 0.48 7.63 37.94 0.29 0.77 16 6 C -0.14 -1.42 6.59 -25.16 -0.17 -1.58 16 7 C -0.14 -1.60 3.32 -90.21 -0.30 -1.90 16 8 H 0.10 0.95 7.65 -51.93 -0.40 0.55 16 9 C 0.55 8.04 5.00 -10.99 -0.05 7.99 16 10 O -0.54 -9.91 16.44 5.56 0.09 -9.82 16 11 N -0.64 -8.85 3.53 -185.62 -0.66 -9.50 16 12 C 0.12 1.71 8.16 -3.53 -0.03 1.68 16 13 C -0.10 -1.57 0.97 -154.70 -0.15 -1.72 16 14 C 0.12 1.51 7.50 -3.51 -0.03 1.48 16 15 C -0.12 -2.10 6.43 -25.01 -0.16 -2.26 16 16 C 0.15 3.49 5.92 -2.20 -0.01 3.47 16 17 N -0.60 -14.52 3.41 -170.19 -0.58 -15.10 16 18 C -0.22 -5.94 10.28 -15.06 -0.15 -6.09 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -25.94 10.09 55.49 0.56 -25.38 16 22 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.15 2.85 6.75 -3.56 -0.02 2.82 16 27 H 0.07 1.08 7.09 -51.93 -0.37 0.71 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.97 6.69 -51.93 -0.35 0.62 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.05 7.11 -51.93 -0.37 0.68 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.01 8.00 -51.92 -0.42 0.60 16 37 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 0.95 6.80 -51.93 -0.35 0.60 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.11 2.79 5.87 -51.93 -0.30 2.48 16 42 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 44 H 0.03 0.47 7.86 -51.93 -0.41 0.06 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -31.60 344.78 -8.63 -40.24 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.15 Total: -0.35 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.67 Total: 3.55 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.68 Total: -49.98 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.31 Total: -15.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.60 -8.63 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073080888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.984 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds