Wall clock time and date at job start Tue Mar 31 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87246 * 2 1 4 4 C 1.54326 * 109.88275 * 121.01657 * 2 1 3 5 5 H 1.08991 * 110.72173 * 215.91819 * 4 2 1 6 6 N 1.46506 * 110.71868 * 339.01611 * 4 2 1 7 7 C 1.36938 * 119.99589 * 202.56076 * 6 4 2 8 8 H 1.07999 * 120.00325 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99673 * 359.71804 * 9 7 6 11 11 Si 1.86795 * 120.00115 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47071 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47211 * 119.99797 * 11 9 7 14 14 H 1.48493 * 109.47327 * 239.99664 * 11 9 7 15 15 C 1.55164 * 103.10244 * 97.46523 * 4 2 1 16 16 C 1.55124 * 101.48397 * 35.28148 * 15 4 2 17 17 N 1.47026 * 110.00895 * 238.89768 * 2 1 3 18 18 C 1.34777 * 125.64362 * 59.49289 * 17 2 1 19 19 O 1.21281 * 120.00288 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99685 * 179.97438 * 18 17 2 21 21 H 1.08999 * 110.66707 * 61.75818 * 20 18 17 22 22 C 1.55000 * 110.74990 * 298.54319 * 20 18 17 23 23 C 1.55818 * 102.78867 * 241.67858 * 22 20 18 24 24 H 1.09002 * 115.38535 * 158.11208 * 23 22 20 25 25 C 1.55822 * 105.32477 * 286.58157 * 23 22 20 26 26 C 1.54997 * 102.78896 * 72.69310 * 25 23 22 27 27 C 1.55816 * 110.74953 * 185.17735 * 20 18 17 28 28 H 1.09008 * 115.38799 * 319.48317 * 27 20 18 29 29 O 1.46527 * 101.24433 * 32.41617 * 23 22 20 30 30 H 1.09003 * 109.46967 * 298.98310 * 1 2 3 31 31 H 1.09002 * 109.46940 * 58.98154 * 1 2 3 32 32 H 1.09005 * 109.47241 * 178.98516 * 1 2 3 33 33 H 0.96999 * 120.00080 * 22.55565 * 6 4 2 34 34 H 0.97000 * 120.00043 * 180.02562 * 10 9 7 35 35 H 1.08995 * 110.99898 * 153.49087 * 15 4 2 36 36 H 1.09003 * 111.00223 * 277.33584 * 15 4 2 37 37 H 1.08999 * 110.41623 * 204.29309 * 16 15 4 38 38 H 1.09001 * 110.29470 * 82.09080 * 16 15 4 39 39 H 1.09001 * 110.74827 * 0.02562 * 22 20 18 40 40 H 1.08997 * 110.75466 * 123.16532 * 22 20 18 41 41 H 1.09004 * 110.74756 * 191.01889 * 25 23 22 42 42 H 1.09002 * 110.75179 * 314.17984 * 25 23 22 43 43 H 1.08993 * 110.75178 * 118.32060 * 26 25 23 44 44 H 1.09003 * 110.74597 * 241.67628 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9623 -0.2775 1.6221 6 7 1.0279 -0.8026 2.2873 7 6 1.3899 -0.9875 3.5949 8 1 2.4323 -1.0933 3.8570 9 6 0.4169 -1.0400 4.5836 10 7 -0.8531 -0.9065 4.2648 11 14 0.9105 -1.2929 6.3673 12 1 2.3880 -1.4088 6.4604 13 1 0.4524 -0.1351 7.1767 14 1 0.2835 -2.5362 6.8830 15 6 2.3591 -2.1680 0.6979 16 6 2.8617 -1.8473 -0.7342 17 7 2.0331 -0.7136 -1.1829 18 6 1.7793 -0.3851 -2.4652 19 8 1.0808 0.5733 -2.7189 20 6 2.3637 -1.2088 -3.5837 21 1 1.9987 -2.2348 -3.5372 22 6 3.9127 -1.1746 -3.5396 23 6 4.2822 -0.5175 -4.9033 24 1 5.2684 -0.0555 -4.9473 25 6 4.0097 -1.6143 -5.9761 26 6 2.4615 -1.6658 -6.0285 27 6 2.0439 -0.5671 -4.9671 28 1 1.0382 -0.1599 -5.0722 29 8 3.1472 0.3879 -5.1010 30 1 -0.3633 0.4980 0.8990 31 1 -0.3633 0.5296 -0.8807 32 1 -0.3634 -1.0275 -0.0182 33 1 0.0917 -0.7079 2.0519 34 1 -1.5330 -0.9428 4.9556 35 1 3.1356 -2.6551 1.2877 36 1 1.4552 -2.7764 0.6664 37 1 2.7163 -2.7062 -1.3894 38 1 3.9136 -1.5626 -0.7108 39 1 4.2618 -0.5621 -2.7082 40 1 4.3195 -2.1835 -3.4710 41 1 4.4192 -1.3195 -6.9423 42 1 4.4204 -2.5735 -5.6608 43 1 2.0995 -1.3967 -7.0207 44 1 2.0979 -2.6514 -5.7377 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074901775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:31 Heat of formation + Delta-G solvation = -45.178822 kcal Electronic energy + Delta-G solvation = -24817.699933 eV Core-core repulsion = 21349.847482 eV Total energy + Delta-G solvation = -3467.852451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22250 -39.48379 -37.29051 -34.24100 -32.69641 -31.84816 -30.88275 -30.58258 -29.77465 -28.66474 -25.21791 -24.11327 -23.24085 -22.17938 -21.77296 -20.54565 -19.49314 -18.59823 -17.55592 -17.14560 -16.73008 -15.83988 -15.67240 -15.26161 -14.82637 -14.38937 -14.16335 -13.82664 -13.63607 -13.32218 -12.96961 -12.76569 -12.43688 -12.16046 -12.06833 -11.93624 -11.78235 -11.61702 -11.52750 -11.31751 -11.21605 -11.17983 -10.99314 -10.83435 -10.70593 -10.44443 -10.20881 -10.12201 -9.97637 -9.72140 -9.37287 -8.97075 -8.36770 -7.03993 -5.83345 -3.13166 2.82024 3.11931 3.39655 3.45410 3.47734 3.64819 4.20036 4.29282 4.43279 4.53798 4.59159 4.68293 4.83388 4.90898 4.99421 5.02361 5.14182 5.23866 5.29993 5.40436 5.51069 5.53646 5.55266 5.58925 5.63152 5.70793 5.74949 5.82926 5.84073 5.89028 6.06170 6.10744 6.22655 6.32175 6.36772 6.54577 6.57459 6.72029 6.84624 6.98539 7.65062 7.80594 8.34851 8.40020 9.46855 10.02068 10.37073 11.39181 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039930 B = 0.003352 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.053257 B = 8350.068930 C = 8691.161361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.070 0.930 4 C 0.174 3.826 5 H 0.063 0.937 6 N -0.717 5.717 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.154 4.154 16 C 0.099 3.901 17 N -0.608 5.608 18 C 0.537 3.463 19 O -0.537 6.537 20 C -0.137 4.137 21 H 0.106 0.894 22 C -0.138 4.138 23 C 0.059 3.941 24 H 0.129 0.871 25 C -0.148 4.148 26 C -0.149 4.149 27 C 0.089 3.911 28 H 0.139 0.861 29 O -0.363 6.363 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.391 0.609 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.426 -4.614 -19.447 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.088 0.912 4 C 0.062 3.938 5 H 0.081 0.919 6 N -0.361 5.361 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.195 4.195 16 C -0.024 4.024 17 N -0.342 5.342 18 C 0.325 3.675 19 O -0.414 6.414 20 C -0.158 4.158 21 H 0.124 0.876 22 C -0.176 4.176 23 C 0.001 3.999 24 H 0.147 0.853 25 C -0.186 4.186 26 C -0.187 4.187 27 C 0.030 3.970 28 H 0.157 0.843 29 O -0.282 6.282 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.086 -3.827 -19.503 22.288 hybrid contribution -0.025 -0.570 1.094 1.234 sum 10.061 -4.397 -18.409 21.435 Atomic orbital electron populations 1.21996 0.94605 1.02274 1.02720 1.21835 0.95373 0.95782 0.84580 0.91217 1.21179 0.93183 0.92031 0.87455 0.91870 1.42686 1.04754 1.86321 1.02299 1.19293 0.92760 1.41984 0.83497 0.91011 1.24762 0.95260 1.02576 0.98133 1.69671 0.99065 1.56717 1.32388 0.86103 0.77524 0.77339 0.85098 1.20513 1.21816 1.21861 1.23593 1.01637 1.01342 0.92959 1.22410 0.94453 0.88447 0.97111 1.48571 1.50164 1.30539 1.04959 1.19895 0.80610 0.84898 0.82112 1.90680 1.38781 1.28815 1.83147 1.23030 0.97091 1.00690 0.95021 0.87553 1.23290 0.93280 1.02100 0.98907 1.24683 0.92348 0.89275 0.93585 0.85334 1.23230 0.96234 0.99273 0.99857 1.23685 0.95699 0.99275 1.00052 1.25003 0.93340 0.87549 0.91059 0.84339 1.90139 1.15351 1.30167 1.92516 0.90197 0.92183 0.92658 0.77095 0.93414 0.90601 0.90735 0.91576 0.91792 0.90163 0.89703 0.90848 0.90448 0.90559 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 7.94 37.16 0.30 -2.74 16 2 C 0.13 2.31 3.47 -66.95 -0.23 2.08 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.17 3.32 3.47 -66.09 -0.23 3.09 16 5 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 6 N -0.72 -17.31 4.98 -51.65 -0.26 -17.57 16 7 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 11 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 C -0.15 -2.46 6.79 -24.46 -0.17 -2.63 16 16 C 0.10 1.26 5.56 -2.42 -0.01 1.25 16 17 N -0.61 -9.36 3.06 -162.88 -0.50 -9.86 16 18 C 0.54 8.39 6.86 -10.99 -0.08 8.31 16 19 O -0.54 -10.38 14.81 5.56 0.08 -10.30 16 20 C -0.14 -1.54 2.14 -89.21 -0.19 -1.73 16 21 H 0.11 0.99 7.64 -51.93 -0.40 0.60 16 22 C -0.14 -1.27 5.10 -24.17 -0.12 -1.40 16 23 C 0.06 0.54 5.66 -23.72 -0.13 0.41 16 24 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 25 C -0.15 -1.06 6.53 -24.17 -0.16 -1.22 16 26 C -0.15 -1.19 6.62 -22.71 -0.15 -1.34 16 27 C 0.09 1.01 4.74 -22.26 -0.11 0.90 16 28 H 0.14 1.69 7.74 -51.92 -0.40 1.29 16 29 O -0.36 -4.83 11.66 -35.23 -0.41 -5.24 16 30 H 0.08 1.67 6.72 -51.93 -0.35 1.32 16 31 H 0.06 1.16 6.77 -51.93 -0.35 0.81 16 32 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 33 H 0.39 10.01 4.99 -40.82 -0.20 9.81 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 0.69 7.55 -51.93 -0.39 0.30 16 38 H 0.06 0.71 7.73 -51.93 -0.40 0.31 16 39 H 0.08 0.85 7.06 -51.93 -0.37 0.48 16 40 H 0.08 0.58 7.80 -51.93 -0.41 0.17 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.44 7.80 -51.93 -0.41 0.03 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.52 7.84 -51.93 -0.41 0.11 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -32.22 339.58 -8.80 -41.02 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.00 Total: 8.89 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.53 Total: -2.10 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.03 Total: -54.23 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.33 Total: -15.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.22 -8.80 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074901775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.163 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds