Wall clock time and date at job start Tue Mar 31 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87246 * 2 1 4 4 C 1.54326 * 109.88275 * 121.01657 * 2 1 3 5 5 H 1.08991 * 110.72173 * 215.91819 * 4 2 1 6 6 N 1.46506 * 110.71868 * 339.01611 * 4 2 1 7 7 C 1.36938 * 119.99589 * 202.56076 * 6 4 2 8 8 H 1.07999 * 120.00325 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99673 * 359.71804 * 9 7 6 11 11 Si 1.86795 * 120.00115 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47071 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47211 * 119.99797 * 11 9 7 14 14 H 1.48493 * 109.47327 * 239.99664 * 11 9 7 15 15 C 1.55164 * 103.10244 * 97.46523 * 4 2 1 16 16 C 1.55124 * 101.48397 * 35.28148 * 15 4 2 17 17 N 1.47026 * 110.00895 * 238.89768 * 2 1 3 18 18 C 1.34777 * 125.64362 * 59.49289 * 17 2 1 19 19 O 1.21281 * 120.00288 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99685 * 179.97438 * 18 17 2 21 21 H 1.08999 * 110.66707 * 61.75818 * 20 18 17 22 22 C 1.55000 * 110.74990 * 298.54319 * 20 18 17 23 23 C 1.55818 * 102.78867 * 241.67858 * 22 20 18 24 24 H 1.09002 * 115.38535 * 158.11208 * 23 22 20 25 25 C 1.55822 * 105.32477 * 286.58157 * 23 22 20 26 26 C 1.54997 * 102.78896 * 72.69310 * 25 23 22 27 27 C 1.55816 * 110.74953 * 185.17735 * 20 18 17 28 28 H 1.09008 * 115.38799 * 319.48317 * 27 20 18 29 29 O 1.46527 * 101.24433 * 32.41617 * 23 22 20 30 30 H 1.09003 * 109.46967 * 298.98310 * 1 2 3 31 31 H 1.09002 * 109.46940 * 58.98154 * 1 2 3 32 32 H 1.09005 * 109.47241 * 178.98516 * 1 2 3 33 33 H 0.96999 * 120.00080 * 22.55565 * 6 4 2 34 34 H 0.97000 * 120.00043 * 180.02562 * 10 9 7 35 35 H 1.08995 * 110.99898 * 153.49087 * 15 4 2 36 36 H 1.09003 * 111.00223 * 277.33584 * 15 4 2 37 37 H 1.08999 * 110.41623 * 204.29309 * 16 15 4 38 38 H 1.09001 * 110.29470 * 82.09080 * 16 15 4 39 39 H 1.09001 * 110.74827 * 0.02562 * 22 20 18 40 40 H 1.08997 * 110.75466 * 123.16532 * 22 20 18 41 41 H 1.09004 * 110.74756 * 191.01889 * 25 23 22 42 42 H 1.09002 * 110.75179 * 314.17984 * 25 23 22 43 43 H 1.08993 * 110.75178 * 118.32060 * 26 25 23 44 44 H 1.09003 * 110.74597 * 241.67628 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9623 -0.2775 1.6221 6 7 1.0279 -0.8026 2.2873 7 6 1.3899 -0.9875 3.5949 8 1 2.4323 -1.0933 3.8570 9 6 0.4169 -1.0400 4.5836 10 7 -0.8531 -0.9065 4.2648 11 14 0.9105 -1.2929 6.3673 12 1 2.3880 -1.4088 6.4604 13 1 0.4524 -0.1351 7.1767 14 1 0.2835 -2.5362 6.8830 15 6 2.3591 -2.1680 0.6979 16 6 2.8617 -1.8473 -0.7342 17 7 2.0331 -0.7136 -1.1829 18 6 1.7793 -0.3851 -2.4652 19 8 1.0808 0.5733 -2.7189 20 6 2.3637 -1.2088 -3.5837 21 1 1.9987 -2.2348 -3.5372 22 6 3.9127 -1.1746 -3.5396 23 6 4.2822 -0.5175 -4.9033 24 1 5.2684 -0.0555 -4.9473 25 6 4.0097 -1.6143 -5.9761 26 6 2.4615 -1.6658 -6.0285 27 6 2.0439 -0.5671 -4.9671 28 1 1.0382 -0.1599 -5.0722 29 8 3.1472 0.3879 -5.1010 30 1 -0.3633 0.4980 0.8990 31 1 -0.3633 0.5296 -0.8807 32 1 -0.3634 -1.0275 -0.0182 33 1 0.0917 -0.7079 2.0519 34 1 -1.5330 -0.9428 4.9556 35 1 3.1356 -2.6551 1.2877 36 1 1.4552 -2.7764 0.6664 37 1 2.7163 -2.7062 -1.3894 38 1 3.9136 -1.5626 -0.7108 39 1 4.2618 -0.5621 -2.7082 40 1 4.3195 -2.1835 -3.4710 41 1 4.4192 -1.3195 -6.9423 42 1 4.4204 -2.5735 -5.6608 43 1 2.0995 -1.3967 -7.0207 44 1 2.0979 -2.6514 -5.7377 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074901775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:30 Heat of formation + Delta-G solvation = -66.935501 kcal Electronic energy + Delta-G solvation = -24818.643374 eV Core-core repulsion = 21349.847482 eV Total energy + Delta-G solvation = -3468.795891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.12508 -40.67519 -38.67387 -35.95648 -33.90003 -33.08923 -32.20993 -31.74887 -30.48844 -30.21518 -26.80187 -25.62372 -24.65169 -23.12436 -22.63668 -21.29838 -20.78425 -19.88062 -19.44435 -18.22707 -17.67398 -17.03847 -16.78959 -16.53619 -16.11347 -15.77297 -15.49487 -15.13046 -14.89316 -14.58193 -14.40755 -13.88812 -13.62526 -13.47479 -13.27653 -13.05621 -12.92821 -12.88020 -12.74528 -12.60217 -12.48673 -12.39675 -12.08178 -12.01297 -11.99545 -11.83920 -11.61978 -11.54264 -11.39304 -10.94203 -10.89470 -10.60636 -9.66044 -9.01786 -7.94103 -5.23336 1.49261 1.50094 1.59879 1.63642 1.93042 2.57559 2.91230 3.31558 3.40598 3.54312 3.68427 3.70694 3.78136 3.90194 3.96921 4.02849 4.13781 4.18886 4.28168 4.33852 4.40092 4.42843 4.50405 4.55364 4.64467 4.64849 4.76688 4.85592 4.91319 5.02118 5.03818 5.04438 5.13045 5.17527 5.19100 5.25266 5.27111 5.34767 5.50280 5.54964 5.68043 6.27565 6.60043 7.17616 7.34720 8.08176 8.31864 9.29839 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039930 B = 0.003352 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.053257 B = 8350.068930 C = 8691.161361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 H 0.056 0.944 4 C 0.166 3.834 5 H 0.066 0.934 6 N -0.733 5.733 7 C -0.238 4.238 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.262 1.262 13 H -0.299 1.299 14 H -0.295 1.295 15 C -0.144 4.144 16 C 0.106 3.894 17 N -0.608 5.608 18 C 0.528 3.472 19 O -0.585 6.585 20 C -0.129 4.129 21 H 0.136 0.864 22 C -0.132 4.132 23 C 0.051 3.949 24 H 0.142 0.858 25 C -0.140 4.140 26 C -0.140 4.140 27 C 0.074 3.926 28 H 0.114 0.886 29 O -0.406 6.406 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.380 0.620 34 H 0.250 0.750 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.409 -7.122 -20.691 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.074 0.926 4 C 0.056 3.944 5 H 0.084 0.916 6 N -0.376 5.376 7 C -0.369 4.369 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.186 1.186 13 H -0.226 1.226 14 H -0.222 1.222 15 C -0.185 4.185 16 C -0.016 4.016 17 N -0.341 5.341 18 C 0.319 3.681 19 O -0.465 6.465 20 C -0.150 4.150 21 H 0.153 0.847 22 C -0.170 4.170 23 C -0.006 4.006 24 H 0.159 0.841 25 C -0.177 4.177 26 C -0.177 4.177 27 C 0.016 3.984 28 H 0.132 0.868 29 O -0.325 6.325 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.216 0.784 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.142 0.858 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.148 -6.367 -20.781 25.402 hybrid contribution -0.927 0.298 1.402 1.707 sum 12.220 -6.069 -19.380 23.701 Atomic orbital electron populations 1.21798 0.95871 1.01348 1.01042 1.21552 0.94231 0.95540 0.85865 0.92609 1.21385 0.91911 0.94481 0.86662 0.91619 1.42867 1.05301 1.86628 1.02771 1.19705 0.93076 1.39560 0.84605 0.89988 1.25567 0.95331 1.03813 1.02150 1.69834 1.00091 1.59115 1.33185 0.85066 0.77994 0.76443 0.80194 1.18607 1.22614 1.22229 1.23397 1.01501 0.98328 0.95266 1.22590 0.95079 0.88606 0.95284 1.48620 1.50296 1.30951 1.04220 1.20854 0.79760 0.84717 0.82779 1.90659 1.40926 1.31139 1.83825 1.23103 0.98575 1.00826 0.92525 0.84672 1.23352 0.91239 1.04018 0.98352 1.24994 0.91821 0.89424 0.94399 0.84057 1.23238 0.95332 0.99695 0.99457 1.23666 0.96498 0.98770 0.98810 1.25059 0.92282 0.88437 0.92626 0.86776 1.90107 1.17137 1.32419 1.92869 0.92641 0.92858 0.93152 0.78412 0.94116 0.89142 0.92489 0.87884 0.89002 0.91567 0.85819 0.90415 0.87712 0.90508 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 7.94 71.98 0.57 -5.16 16 2 C 0.13 4.85 3.47 45.34 0.16 5.01 16 3 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.17 6.25 3.47 46.18 0.16 6.41 16 5 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 6 N -0.73 -35.89 4.98 -317.31 -1.58 -37.47 16 7 C -0.24 -12.71 9.97 84.03 0.84 -11.87 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 10 N -0.97 -59.10 13.06 21.65 0.28 -58.81 16 11 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 13 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 C -0.14 -4.26 6.79 32.06 0.22 -4.05 16 16 C 0.11 2.28 5.56 86.93 0.48 2.77 16 17 N -0.61 -17.82 3.06 -787.63 -2.41 -20.23 16 18 C 0.53 16.07 6.86 87.66 0.60 16.67 16 19 O -0.59 -23.34 14.81 -3.03 -0.04 -23.39 16 20 C -0.13 -2.54 2.14 -9.88 -0.02 -2.57 16 21 H 0.14 1.88 7.64 -2.39 -0.02 1.87 16 22 C -0.13 -1.89 5.10 32.25 0.16 -1.73 16 23 C 0.05 0.78 5.66 32.54 0.18 0.96 16 24 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 25 C -0.14 -1.42 6.53 32.25 0.21 -1.21 16 26 C -0.14 -1.79 6.62 33.20 0.22 -1.57 16 27 C 0.07 1.60 4.74 33.49 0.16 1.76 16 28 H 0.11 2.92 7.74 -2.38 -0.02 2.90 16 29 O -0.41 -10.51 11.66 -148.98 -1.74 -12.25 16 30 H 0.05 2.48 6.72 -2.39 -0.02 2.46 16 31 H 0.05 2.18 6.77 -2.39 -0.02 2.16 16 32 H 0.05 2.03 8.05 -2.38 -0.02 2.01 16 33 H 0.38 20.18 4.99 -92.71 -0.46 19.72 16 34 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.56 7.55 -2.39 -0.02 1.54 16 38 H 0.09 1.56 7.73 -2.39 -0.02 1.55 16 39 H 0.07 1.16 7.06 -2.39 -0.02 1.15 16 40 H 0.12 0.85 7.80 -2.39 -0.02 0.83 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.10 0.54 7.80 -2.39 -0.02 0.52 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.10 0.85 7.84 -2.39 -0.02 0.84 16 Total: -1.00 -73.84 339.58 1.48 -72.35 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.53 Total: 30.91 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 4.41 Total: 1.59 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -3.70 Total: -116.52 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.78 Total: -35.64 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.84 1.48 -72.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074901775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.418 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds