Wall clock time and date at job start Tue Mar 31 2020 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.54196 * 2 1 4 4 C 1.55136 * 110.52134 * 237.22069 * 2 1 3 5 5 C 1.54997 * 102.09520 * 220.39708 * 4 2 1 6 6 O 1.44385 * 103.48711 * 37.10930 * 5 4 2 7 7 C 1.43744 * 106.97233 * 319.93864 * 6 5 4 8 8 H 1.09006 * 109.87670 * 266.93600 * 7 6 5 9 9 C 1.50702 * 109.87491 * 145.94084 * 7 6 5 10 10 O 1.21269 * 120.00249 * 345.50620 * 9 7 6 11 11 N 1.34782 * 119.99649 * 165.50881 * 9 7 6 12 12 C 1.47404 * 125.59081 * 354.65442 * 11 9 7 13 13 C 1.54867 * 104.81852 * 204.35818 * 12 11 9 14 14 C 1.55175 * 101.73109 * 322.76782 * 13 12 11 15 15 H 1.08993 * 113.25691 * 158.95191 * 14 13 12 16 16 C 1.53750 * 108.30797 * 285.38899 * 14 13 12 17 17 N 1.46592 * 108.10947 * 124.37795 * 16 14 13 18 18 C 1.36935 * 125.31072 * 181.28501 * 17 16 14 19 19 H 1.08003 * 120.00165 * 9.07074 * 18 17 16 20 20 C 1.38817 * 119.99578 * 189.06825 * 18 17 16 21 21 N 1.31615 * 120.00406 * 355.79874 * 20 18 17 22 22 Si 1.86809 * 119.99612 * 176.07650 * 20 18 17 23 23 H 1.48504 * 109.46833 * 94.99584 * 22 20 18 24 24 H 1.48492 * 109.46997 * 214.99404 * 22 20 18 25 25 H 1.48497 * 109.47183 * 334.99553 * 22 20 18 26 26 C 1.46715 * 109.37642 * 1.54479 * 17 16 14 27 27 C 1.46714 * 125.58559 * 174.59960 * 11 9 7 28 28 H 1.08997 * 111.52757 * 56.15289 * 27 11 9 29 29 H 1.09003 * 109.46509 * 302.15302 * 1 2 3 30 30 H 1.09002 * 109.46879 * 62.14945 * 1 2 3 31 31 H 1.08991 * 109.47386 * 182.15131 * 1 2 3 32 32 H 1.09001 * 110.83439 * 102.23003 * 4 2 1 33 33 H 1.08999 * 111.01342 * 338.64411 * 4 2 1 34 34 H 1.08999 * 110.61823 * 278.61265 * 5 4 2 35 35 H 1.09003 * 110.75294 * 155.66994 * 5 4 2 36 36 H 1.08995 * 110.37077 * 85.52191 * 12 11 9 37 37 H 1.08997 * 110.36970 * 323.19438 * 12 11 9 38 38 H 1.08999 * 110.97253 * 204.65817 * 13 12 11 39 39 H 1.08992 * 111.00612 * 80.89083 * 13 12 11 40 40 H 1.09000 * 109.74803 * 4.70383 * 16 14 13 41 41 H 1.08997 * 109.74458 * 244.04330 * 16 14 13 42 42 H 0.97001 * 120.00324 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.98867 * 101.14018 * 26 17 16 44 44 H 1.09001 * 109.98438 * 222.45358 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0738 -0.7866 -1.2216 5 6 3.2687 -1.5580 -0.6053 6 8 2.7976 -1.9110 0.7131 7 6 2.0694 -0.7782 1.2157 8 1 2.7330 -0.1403 1.7995 9 6 0.9227 -1.2462 2.0744 10 8 0.5736 -2.4071 2.0397 11 7 0.2852 -0.3746 2.8808 12 6 0.6736 1.0298 3.1036 13 6 0.0861 1.3879 4.4911 14 6 -1.2630 0.6217 4.4698 15 1 -1.6692 0.4376 5.4643 16 6 -2.2342 1.3791 3.5494 17 7 -2.7118 0.4462 2.5244 18 6 -3.5740 0.7605 1.5081 19 1 -3.8427 1.7908 1.3271 20 6 -4.1024 -0.2452 0.7103 21 7 -3.7119 -1.4909 0.8768 22 14 -5.3622 0.1709 -0.6048 23 1 -4.6746 0.3560 -1.9080 24 1 -6.3452 -0.9365 -0.7166 25 1 -6.0682 1.4240 -0.2352 26 6 -2.1269 -0.8783 2.7612 27 6 -0.9097 -0.6677 3.6800 28 1 -0.7475 -1.5154 4.3458 29 1 -0.3632 0.5469 0.8701 30 1 -0.3633 0.4801 -0.9087 31 1 -0.3634 -1.0268 0.0386 32 1 2.4119 -0.1052 -2.0022 33 1 1.3234 -1.4762 -1.6080 34 1 4.1472 -0.9162 -0.5399 35 1 3.4911 -2.4534 -1.1859 36 1 0.2433 1.6693 2.3329 37 1 1.7592 1.1260 3.1149 38 1 -0.0765 2.4620 4.5804 39 1 0.7286 1.0245 5.2930 40 1 -1.7173 2.2136 3.0756 41 1 -3.0779 1.7510 4.1306 42 1 -4.0815 -2.1937 0.3196 43 1 -2.8563 -1.5263 3.2472 44 1 -1.8075 -1.3188 1.8167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076256394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:13 Heat of formation + Delta-G solvation = -37.778208 kcal Electronic energy + Delta-G solvation = -26341.332226 eV Core-core repulsion = 22873.800689 eV Total energy + Delta-G solvation = -3467.531536 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63491 -39.17082 -37.14571 -34.72882 -33.45956 -32.06230 -30.81074 -30.03016 -28.61849 -26.80004 -25.91914 -24.67205 -23.20450 -22.23044 -21.10520 -20.26627 -19.47178 -18.27982 -17.22693 -16.78179 -16.16966 -16.07057 -15.43863 -14.81868 -14.61254 -14.06321 -13.88780 -13.70969 -13.58869 -13.15475 -12.84797 -12.67652 -12.22215 -12.05672 -11.94726 -11.77001 -11.58459 -11.28440 -11.12612 -11.00919 -10.85322 -10.74606 -10.70024 -10.49273 -10.48097 -10.26171 -10.11282 -9.85059 -9.72604 -9.70591 -8.98558 -8.54675 -8.04225 -6.74910 -5.65802 -3.03329 3.11513 3.20928 3.39801 3.45694 3.48152 4.15641 4.49854 4.53224 4.71438 4.79765 4.85680 4.96680 5.12560 5.18083 5.20625 5.41611 5.51028 5.53218 5.58447 5.62435 5.68013 5.75604 5.76982 5.79669 5.89910 5.91633 6.04808 6.14724 6.23934 6.36166 6.40788 6.51185 6.55956 6.61962 6.69232 6.83346 6.95826 7.04209 7.57641 7.66382 7.93856 8.05901 8.37289 8.73601 9.25406 9.86904 10.51427 11.42244 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.007297 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.324256 B = 3836.328426 C = 5016.022003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.150 4.150 5 C 0.046 3.954 6 O -0.351 6.351 7 C 0.067 3.933 8 H 0.082 0.918 9 C 0.538 3.462 10 O -0.518 6.518 11 N -0.599 5.599 12 C 0.099 3.901 13 C -0.124 4.124 14 C -0.110 4.110 15 H 0.096 0.904 16 C 0.142 3.858 17 N -0.596 5.596 18 C -0.230 4.230 19 H 0.075 0.925 20 C -0.002 4.002 21 N -0.910 5.910 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.165 3.835 27 C 0.114 3.886 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.023 0.977 41 H 0.020 0.980 42 H 0.252 0.748 43 H 0.027 0.973 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.499 6.653 2.147 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.130 4.130 3 H 0.103 0.897 4 C -0.188 4.188 5 C -0.031 4.031 6 O -0.268 6.268 7 C 0.005 3.995 8 H 0.099 0.901 9 C 0.325 3.675 10 O -0.392 6.392 11 N -0.335 5.335 12 C -0.024 4.024 13 C -0.162 4.162 14 C -0.129 4.129 15 H 0.114 0.886 16 C 0.016 3.984 17 N -0.323 5.323 18 C -0.359 4.359 19 H 0.092 0.908 20 C -0.199 4.199 21 N -0.557 5.557 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.039 3.961 27 C 0.010 3.990 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.269 5.627 2.008 14.552 hybrid contribution -0.746 0.498 -0.828 1.220 sum 12.523 6.124 1.180 13.990 Atomic orbital electron populations 1.22053 0.90947 1.04231 1.03619 1.22555 0.99128 0.98798 0.92523 0.89688 1.23304 0.98269 0.99510 0.97715 1.23580 0.95935 0.99810 0.83788 1.88966 1.70490 1.36321 1.31063 1.22718 0.92645 0.88346 0.95772 0.90080 1.19663 0.83171 0.85296 0.79352 1.90722 1.65869 1.17290 1.65364 1.48215 1.29116 1.11134 1.45057 1.22349 0.98800 0.83518 0.97703 1.22796 0.96640 1.00595 0.96173 1.23048 0.95403 0.95282 0.99165 0.88612 1.21172 0.94275 0.92964 0.89995 1.44137 1.53340 1.05843 1.28952 1.18919 1.18235 0.92549 1.06175 0.90763 1.24819 0.99786 0.95339 0.99930 1.69959 1.45056 0.99194 1.41450 0.86218 0.81432 0.77144 0.81663 1.21786 1.21701 1.20726 1.21522 0.88766 0.87419 0.98390 1.22689 0.86600 0.96475 0.93237 0.90465 0.89775 0.92599 0.91308 0.90191 0.89866 0.92295 0.88826 0.90839 0.91563 0.90060 0.91134 0.95892 0.96186 0.93685 0.95529 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.88 37.16 0.29 -2.54 16 2 C -0.11 -1.61 3.63 -88.92 -0.32 -1.93 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.15 -1.93 6.71 -24.55 -0.16 -2.10 16 5 C 0.05 0.56 7.72 38.21 0.29 0.86 16 6 O -0.35 -5.98 10.78 -54.37 -0.59 -6.57 16 7 C 0.07 1.06 3.21 -27.31 -0.09 0.97 16 8 H 0.08 1.06 7.08 -51.93 -0.37 0.69 16 9 C 0.54 10.63 4.59 -10.98 -0.05 10.58 16 10 O -0.52 -12.68 16.49 -13.57 -0.22 -12.90 16 11 N -0.60 -10.70 2.07 -162.16 -0.34 -11.04 16 12 C 0.10 1.36 5.65 -2.56 -0.01 1.35 16 13 C -0.12 -1.52 6.30 -24.60 -0.16 -1.68 16 14 C -0.11 -1.75 4.25 -87.87 -0.37 -2.13 16 15 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.14 2.75 6.41 -3.60 -0.02 2.72 16 17 N -0.60 -14.56 3.38 -171.94 -0.58 -15.14 16 18 C -0.23 -6.21 10.23 -15.06 -0.15 -6.37 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C 0.00 -0.04 5.49 -17.43 -0.10 -0.14 16 21 N -0.91 -26.85 10.31 55.49 0.57 -26.28 16 22 Si 0.90 22.04 29.56 -169.99 -5.02 17.01 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.16 4.05 5.04 -3.43 -0.02 4.04 16 27 C 0.11 2.22 3.64 -66.11 -0.24 1.98 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.68 4.99 -51.93 -0.26 1.42 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.58 6.97 -51.93 -0.36 1.22 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.22 7.88 -51.93 -0.41 0.81 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.07 6.26 -51.93 -0.33 0.75 16 37 H 0.07 0.73 7.08 -51.93 -0.37 0.36 16 38 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.43 6.78 -51.93 -0.35 0.08 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.03 0.74 8.02 -51.93 -0.42 0.32 16 44 H 0.09 2.61 5.56 -51.93 -0.29 2.32 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -33.20 332.64 -9.19 -42.39 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.91 Total: 1.89 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.11 Total: 5.62 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.35 Total: -52.45 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.81 Total: -19.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.20 -9.19 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076256394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.613 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds