Wall clock time and date at job start Tue Mar 31 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.54196 * 2 1 4 4 C 1.55136 * 110.52134 * 237.22069 * 2 1 3 5 5 C 1.54997 * 102.09520 * 220.39708 * 4 2 1 6 6 O 1.44385 * 103.48711 * 37.10930 * 5 4 2 7 7 C 1.43744 * 106.97233 * 319.93864 * 6 5 4 8 8 H 1.09006 * 109.87670 * 266.93600 * 7 6 5 9 9 C 1.50702 * 109.87491 * 145.94084 * 7 6 5 10 10 O 1.21269 * 120.00249 * 345.50620 * 9 7 6 11 11 N 1.34782 * 119.99649 * 165.50881 * 9 7 6 12 12 C 1.47404 * 125.59081 * 354.65442 * 11 9 7 13 13 C 1.54867 * 104.81852 * 204.35818 * 12 11 9 14 14 C 1.55175 * 101.73109 * 322.76782 * 13 12 11 15 15 H 1.08993 * 113.25691 * 158.95191 * 14 13 12 16 16 C 1.53750 * 108.30797 * 285.38899 * 14 13 12 17 17 N 1.46592 * 108.10947 * 124.37795 * 16 14 13 18 18 C 1.36935 * 125.31072 * 181.28501 * 17 16 14 19 19 H 1.08003 * 120.00165 * 9.07074 * 18 17 16 20 20 C 1.38817 * 119.99578 * 189.06825 * 18 17 16 21 21 N 1.31615 * 120.00406 * 355.79874 * 20 18 17 22 22 Si 1.86809 * 119.99612 * 176.07650 * 20 18 17 23 23 H 1.48504 * 109.46833 * 94.99584 * 22 20 18 24 24 H 1.48492 * 109.46997 * 214.99404 * 22 20 18 25 25 H 1.48497 * 109.47183 * 334.99553 * 22 20 18 26 26 C 1.46715 * 109.37642 * 1.54479 * 17 16 14 27 27 C 1.46714 * 125.58559 * 174.59960 * 11 9 7 28 28 H 1.08997 * 111.52757 * 56.15289 * 27 11 9 29 29 H 1.09003 * 109.46509 * 302.15302 * 1 2 3 30 30 H 1.09002 * 109.46879 * 62.14945 * 1 2 3 31 31 H 1.08991 * 109.47386 * 182.15131 * 1 2 3 32 32 H 1.09001 * 110.83439 * 102.23003 * 4 2 1 33 33 H 1.08999 * 111.01342 * 338.64411 * 4 2 1 34 34 H 1.08999 * 110.61823 * 278.61265 * 5 4 2 35 35 H 1.09003 * 110.75294 * 155.66994 * 5 4 2 36 36 H 1.08995 * 110.37077 * 85.52191 * 12 11 9 37 37 H 1.08997 * 110.36970 * 323.19438 * 12 11 9 38 38 H 1.08999 * 110.97253 * 204.65817 * 13 12 11 39 39 H 1.08992 * 111.00612 * 80.89083 * 13 12 11 40 40 H 1.09000 * 109.74803 * 4.70383 * 16 14 13 41 41 H 1.08997 * 109.74458 * 244.04330 * 16 14 13 42 42 H 0.97001 * 120.00324 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.98867 * 101.14018 * 26 17 16 44 44 H 1.09001 * 109.98438 * 222.45358 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0738 -0.7866 -1.2216 5 6 3.2687 -1.5580 -0.6053 6 8 2.7976 -1.9110 0.7131 7 6 2.0694 -0.7782 1.2157 8 1 2.7330 -0.1403 1.7995 9 6 0.9227 -1.2462 2.0744 10 8 0.5736 -2.4071 2.0397 11 7 0.2852 -0.3746 2.8808 12 6 0.6736 1.0298 3.1036 13 6 0.0861 1.3879 4.4911 14 6 -1.2630 0.6217 4.4698 15 1 -1.6692 0.4376 5.4643 16 6 -2.2342 1.3791 3.5494 17 7 -2.7118 0.4462 2.5244 18 6 -3.5740 0.7605 1.5081 19 1 -3.8427 1.7908 1.3271 20 6 -4.1024 -0.2452 0.7103 21 7 -3.7119 -1.4909 0.8768 22 14 -5.3622 0.1709 -0.6048 23 1 -4.6746 0.3560 -1.9080 24 1 -6.3452 -0.9365 -0.7166 25 1 -6.0682 1.4240 -0.2352 26 6 -2.1269 -0.8783 2.7612 27 6 -0.9097 -0.6677 3.6800 28 1 -0.7475 -1.5154 4.3458 29 1 -0.3632 0.5469 0.8701 30 1 -0.3633 0.4801 -0.9087 31 1 -0.3634 -1.0268 0.0386 32 1 2.4119 -0.1052 -2.0022 33 1 1.3234 -1.4762 -1.6080 34 1 4.1472 -0.9162 -0.5399 35 1 3.4911 -2.4534 -1.1859 36 1 0.2433 1.6693 2.3329 37 1 1.7592 1.1260 3.1149 38 1 -0.0765 2.4620 4.5804 39 1 0.7286 1.0245 5.2930 40 1 -1.7173 2.2136 3.0756 41 1 -3.0779 1.7510 4.1306 42 1 -4.0815 -2.1937 0.3196 43 1 -2.8563 -1.5263 3.2472 44 1 -1.8075 -1.3188 1.8167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076256394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:12 Heat of formation + Delta-G solvation = -60.046034 kcal Electronic energy + Delta-G solvation = -26342.297831 eV Core-core repulsion = 22873.800689 eV Total energy + Delta-G solvation = -3468.497142 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.01127 -40.47481 -38.67154 -36.46236 -34.80843 -33.76308 -32.38314 -31.31391 -30.19955 -28.28443 -27.40421 -26.54015 -24.46567 -23.42860 -22.57326 -21.77130 -20.86194 -19.72481 -18.86591 -18.38245 -17.44915 -17.38925 -16.89308 -16.64171 -15.93398 -15.66526 -15.34201 -15.17657 -14.82710 -14.51878 -14.35979 -14.13975 -13.80913 -13.54653 -13.50443 -13.27898 -12.97030 -12.92628 -12.83156 -12.44053 -12.33547 -12.19971 -12.13019 -11.96105 -11.84630 -11.78818 -11.71625 -11.53757 -11.36214 -11.01488 -10.69283 -10.38255 -9.54140 -8.79507 -7.79745 -5.18457 1.41420 1.43136 1.52433 1.65285 1.89215 2.48509 3.02447 3.31987 3.36287 3.47554 3.64060 3.72021 3.74708 3.80812 4.00570 4.06736 4.20058 4.27639 4.31710 4.43593 4.51299 4.54634 4.62459 4.65647 4.71163 4.79071 4.82161 4.90240 4.96055 4.99308 5.02471 5.15478 5.18478 5.20276 5.31943 5.43266 5.46690 5.50664 5.61698 5.83431 5.89514 6.28116 6.65490 7.11562 7.27109 7.83520 8.46414 9.26693 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.007297 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.324256 B = 3836.328426 C = 5016.022003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 H 0.133 0.867 4 C -0.150 4.150 5 C 0.043 3.957 6 O -0.388 6.388 7 C 0.072 3.928 8 H 0.126 0.874 9 C 0.524 3.476 10 O -0.586 6.586 11 N -0.596 5.596 12 C 0.089 3.911 13 C -0.106 4.106 14 C -0.098 4.098 15 H 0.116 0.884 16 C 0.136 3.864 17 N -0.611 5.611 18 C -0.229 4.229 19 H 0.085 0.915 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.967 3.033 23 H -0.290 1.290 24 H -0.302 1.302 25 H -0.263 1.263 26 C 0.179 3.821 27 C 0.114 3.886 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.008 0.992 32 H 0.118 0.882 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.044 0.956 41 H 0.023 0.977 42 H 0.239 0.761 43 H -0.025 1.025 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.413 10.775 2.782 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 H 0.151 0.849 4 C -0.187 4.187 5 C -0.032 4.032 6 O -0.307 6.307 7 C 0.011 3.989 8 H 0.144 0.856 9 C 0.314 3.686 10 O -0.465 6.465 11 N -0.330 5.330 12 C -0.032 4.032 13 C -0.144 4.144 14 C -0.117 4.117 15 H 0.134 0.866 16 C 0.011 3.989 17 N -0.337 5.337 18 C -0.358 4.358 19 H 0.103 0.897 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.796 3.204 23 H -0.217 1.217 24 H -0.229 1.229 25 H -0.187 1.187 26 C 0.052 3.948 27 C 0.009 3.991 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.136 0.864 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.049 0.951 43 H -0.007 1.007 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.205 9.844 2.671 19.148 hybrid contribution -1.704 -0.780 -1.020 2.134 sum 14.501 9.064 1.650 17.180 Atomic orbital electron populations 1.21833 0.94769 0.99975 1.02764 1.22616 0.95417 1.01374 0.92784 0.84928 1.23320 0.97765 0.99542 0.98079 1.23869 0.96631 1.00932 0.81771 1.88940 1.70754 1.37726 1.33256 1.22857 0.91696 0.88448 0.95864 0.85642 1.20667 0.83976 0.84707 0.79289 1.90678 1.68069 1.20411 1.67381 1.48289 1.27806 1.12930 1.43979 1.22734 1.01579 0.80337 0.98543 1.22841 0.93715 1.01915 0.95884 1.23058 0.97063 0.92984 0.98589 0.86563 1.21450 0.95194 0.92822 0.89415 1.44342 1.53045 1.06591 1.29718 1.19326 1.17477 0.92779 1.06193 0.89703 1.25611 1.02134 0.95275 1.02622 1.70259 1.46509 1.00121 1.42568 0.85226 0.78968 0.77054 0.79141 1.21716 1.22929 1.18702 1.21075 0.89805 0.86968 0.96931 1.22423 0.85466 0.98612 0.92612 0.91395 0.91094 0.92847 0.97241 0.86376 0.93265 0.88238 0.88205 0.91374 0.87313 0.86828 0.88512 0.93793 0.95899 0.95143 1.00698 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 7.88 71.98 0.57 -4.67 16 2 C -0.10 -2.74 3.63 -9.69 -0.04 -2.78 16 3 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 4 C -0.15 -3.56 6.71 32.01 0.21 -3.34 16 5 C 0.04 0.96 7.72 72.67 0.56 1.52 16 6 O -0.39 -12.84 10.78 -130.68 -1.41 -14.25 16 7 C 0.07 2.15 3.21 30.22 0.10 2.25 16 8 H 0.13 2.62 7.08 -2.38 -0.02 2.60 16 9 C 0.52 21.13 4.59 87.66 0.40 21.53 16 10 O -0.59 -30.93 16.49 15.30 0.25 -30.68 16 11 N -0.60 -20.92 2.07 -785.33 -1.63 -22.55 16 12 C 0.09 2.07 5.65 86.84 0.49 2.56 16 13 C -0.11 -2.03 6.30 31.98 0.20 -1.83 16 14 C -0.10 -2.89 4.25 -9.01 -0.04 -2.93 16 15 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 16 C 0.14 5.01 6.41 86.61 0.56 5.57 16 17 N -0.61 -30.59 3.38 -697.90 -2.36 -32.94 16 18 C -0.23 -12.59 10.23 84.03 0.86 -11.73 16 19 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 21 N -0.95 -60.23 10.31 21.65 0.22 -60.01 16 22 Si 0.97 46.93 29.56 68.60 2.03 48.96 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.18 9.44 5.04 86.66 0.44 9.88 16 27 C 0.11 4.54 3.64 46.05 0.17 4.70 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.07 2.87 4.99 -2.39 -0.01 2.85 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.01 0.43 6.97 -2.39 -0.02 0.41 16 32 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.49 7.88 -2.39 -0.02 1.47 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.70 6.26 -2.39 -0.01 1.69 16 37 H 0.11 1.67 7.08 -2.39 -0.02 1.65 16 38 H 0.11 1.58 7.96 -2.39 -0.02 1.56 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.47 6.78 -2.39 -0.02 1.45 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 43 H -0.02 -1.52 8.02 -2.39 -0.02 -1.54 16 44 H 0.05 2.94 5.56 -2.39 -0.01 2.93 16 Total: -1.00 -84.09 332.64 3.04 -81.05 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.99 Total: 12.90 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 4.95 Total: 17.51 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -3.76 Total: -115.50 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.16 Total: -44.92 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -84.09 3.04 -81.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076256394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.004 kcal (2) G-P(sol) polarization free energy of solvation -84.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds