Wall clock time and date at job start Tue Mar 31 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.67587 * 2 1 4 4 C 1.55000 * 110.61526 * 237.03407 * 2 1 3 5 5 C 1.54818 * 102.09030 * 204.47771 * 4 2 1 6 6 C 1.54097 * 104.18808 * 20.87976 * 5 4 2 7 7 H 1.08998 * 109.88273 * 242.60534 * 6 5 4 8 8 C 1.50700 * 110.00349 * 121.52512 * 6 5 4 9 9 O 1.21286 * 120.00095 * 245.64040 * 8 6 5 10 10 N 1.34778 * 120.00019 * 65.64004 * 8 6 5 11 11 C 1.47356 * 125.52506 * 359.69353 * 10 8 6 12 12 C 1.55156 * 104.78122 * 156.48799 * 11 10 8 13 13 C 1.54799 * 101.40178 * 37.52162 * 12 11 10 14 14 H 1.09005 * 112.63960 * 85.17756 * 13 12 11 15 15 C 1.53267 * 109.74340 * 212.12380 * 13 12 11 16 16 N 1.46586 * 108.15739 * 95.76569 * 15 13 12 17 17 C 1.36939 * 125.30487 * 177.88841 * 16 15 13 18 18 H 1.07997 * 120.00081 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99983 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99634 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47391 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46989 * 120.00109 * 21 19 17 24 24 H 1.48501 * 109.47125 * 239.99853 * 21 19 17 25 25 C 1.46601 * 109.38663 * 357.88697 * 16 15 13 26 26 C 1.47215 * 125.53246 * 180.02562 * 10 8 6 27 27 H 1.09002 * 112.28710 * 56.20844 * 26 10 8 28 28 O 1.43745 * 107.29442 * 2.03270 * 6 5 4 29 29 H 1.09003 * 109.46836 * 298.48606 * 1 2 3 30 30 H 1.08994 * 109.47163 * 58.48871 * 1 2 3 31 31 H 1.09002 * 109.47298 * 178.49042 * 1 2 3 32 32 H 1.08996 * 110.90766 * 86.28222 * 4 2 1 33 33 H 1.09001 * 110.94010 * 322.68241 * 4 2 1 34 34 H 1.09004 * 110.48564 * 262.20686 * 5 4 2 35 35 H 1.08997 * 110.48807 * 139.56009 * 5 4 2 36 36 H 1.09004 * 110.35501 * 275.43254 * 11 10 8 37 37 H 1.08993 * 110.35340 * 37.72798 * 11 10 8 38 38 H 1.08991 * 111.21039 * 279.43371 * 12 11 10 39 39 H 1.09004 * 110.95444 * 155.49351 * 12 11 10 40 40 H 1.09004 * 109.73626 * 215.44737 * 15 13 12 41 41 H 1.08997 * 109.74103 * 336.07436 * 15 13 12 42 42 H 0.96999 * 119.99734 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.91444 * 258.45015 * 25 16 15 44 44 H 1.09001 * 109.91279 * 137.17296 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0757 -0.7894 -1.2172 5 6 3.4795 -1.2169 -0.7235 6 6 3.3839 -1.1255 0.8118 7 1 4.0853 -0.3784 1.1831 8 6 3.6900 -2.4662 1.4280 9 8 2.8253 -3.0700 2.0270 10 7 4.9247 -2.9944 1.3136 11 6 6.0604 -2.3722 0.6104 12 6 7.3208 -3.0088 1.2533 13 6 6.8482 -4.4660 1.4755 14 1 6.9835 -5.0903 0.5922 15 6 7.5187 -5.0426 2.7273 16 7 6.5986 -4.8759 3.8562 17 6 6.8294 -5.3065 5.1355 18 1 7.7511 -5.8153 5.3760 19 6 5.8785 -5.0891 6.1231 20 7 4.7550 -4.4694 5.8298 21 14 6.1929 -5.6771 7.8680 22 1 7.5200 -6.3400 7.9354 23 1 6.1730 -4.5154 8.7930 24 1 5.1361 -6.6426 8.2630 25 6 5.3930 -4.1763 3.4021 26 6 5.3556 -4.2896 1.8649 27 1 4.7344 -5.1146 1.5163 28 8 2.0384 -0.7354 1.1337 29 1 -0.3633 0.4902 0.9033 30 1 -0.3633 0.5371 -0.8761 31 1 -0.3634 -1.0273 -0.0271 32 1 2.1509 -0.1477 -2.0950 33 1 1.4551 -1.6607 -1.4264 34 1 4.2406 -0.5333 -1.0997 35 1 3.6974 -2.2393 -1.0321 36 1 6.0183 -2.6010 -0.4545 37 1 6.0587 -1.2937 0.7677 38 1 7.5657 -2.5284 2.2005 39 1 8.1682 -2.9727 0.5685 40 1 7.7293 -6.1016 2.5774 41 1 8.4472 -4.5078 2.9271 42 1 4.0903 -4.3178 6.5199 43 1 5.4392 -3.1278 3.6963 44 1 4.5076 -4.6461 3.8306 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076266606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:03 Heat of formation + Delta-G solvation = -42.196036 kcal Electronic energy + Delta-G solvation = -25083.976107 eV Core-core repulsion = 21616.253000 eV Total energy + Delta-G solvation = -3467.723108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.46699 -39.25462 -37.32412 -34.93857 -32.56642 -32.31922 -31.54870 -30.59639 -28.72033 -27.20150 -26.09418 -24.42048 -23.10335 -21.90964 -21.33830 -20.46639 -19.70091 -18.68057 -17.17828 -16.78310 -16.45597 -16.13041 -15.42066 -14.96117 -14.50480 -14.21771 -13.98716 -13.91472 -13.40709 -13.21030 -13.01958 -12.70918 -12.47976 -12.34192 -12.12126 -11.98930 -11.77135 -11.56390 -11.45910 -11.22091 -11.06973 -11.00742 -10.95503 -10.77088 -10.41195 -10.14710 -10.00807 -9.96727 -9.72919 -9.66305 -9.09299 -8.55299 -8.14731 -6.77280 -5.57525 -3.00328 2.95786 3.12942 3.44958 3.49225 3.53030 3.88801 4.33816 4.50205 4.54497 4.66743 4.70618 4.81280 4.99223 5.00939 5.14769 5.23418 5.28408 5.36278 5.46900 5.50015 5.55451 5.56677 5.61995 5.69587 5.70769 5.79617 5.83151 5.91571 5.94513 6.03771 6.04363 6.23940 6.36055 6.55627 6.60671 6.68677 6.84514 6.92821 7.60074 7.69567 7.93883 8.03036 8.43102 8.64897 9.29297 9.90304 10.52302 11.46705 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.004503 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.499569 B = 6216.682137 C = 7324.493919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.067 3.933 7 H 0.090 0.910 8 C 0.524 3.476 9 O -0.506 6.506 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.122 4.122 13 C -0.109 4.109 14 H 0.087 0.913 15 C 0.146 3.854 16 N -0.602 5.602 17 C -0.233 4.233 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.913 5.913 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.166 3.834 26 C 0.116 3.884 27 H 0.082 0.918 28 O -0.342 6.342 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.020 0.980 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 9.558 -18.323 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.089 0.911 4 C -0.187 4.187 5 C -0.182 4.182 6 C 0.005 3.995 7 H 0.107 0.893 8 C 0.310 3.690 9 O -0.379 6.379 10 N -0.345 5.345 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.129 4.129 14 H 0.105 0.895 15 C 0.019 3.981 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.560 5.560 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.040 3.960 26 C 0.013 3.987 27 H 0.100 0.900 28 O -0.260 6.260 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.221 9.225 -17.569 19.881 hybrid contribution 0.400 -0.102 0.721 0.831 sum -0.821 9.124 -16.848 19.177 Atomic orbital electron populations 1.21756 0.92956 1.03227 1.02348 1.23195 0.95574 0.95168 0.85058 0.91131 1.23201 0.95972 1.00993 0.98499 1.22919 0.98415 1.03472 0.93412 1.22534 0.86922 0.95050 0.94963 0.89254 1.19917 0.81352 0.86844 0.80895 1.90772 1.45249 1.61497 1.40388 1.48482 1.09534 1.21292 1.55164 1.22381 0.86402 0.97599 0.95885 1.22839 0.95972 0.95610 1.01610 1.22868 0.94963 0.96171 0.98879 0.89476 1.20968 0.93326 0.97193 0.86582 1.44180 1.15948 1.67766 1.04998 1.19062 1.02197 1.31435 0.83440 0.90320 1.24860 0.96618 1.00597 0.98295 1.69943 1.08209 1.46010 1.31821 0.86042 0.77284 0.77892 0.84507 1.20516 1.21777 1.21691 1.21658 0.92453 0.96202 0.85664 1.22967 0.93345 0.84033 0.98391 0.90045 1.89066 1.26086 1.72941 1.37905 0.91643 0.91229 0.91547 0.90010 0.90170 0.89767 0.89959 0.91733 0.91260 0.89873 0.90390 0.95906 0.95711 0.93626 0.96229 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.66 37.16 0.36 -1.06 16 2 C 0.07 0.75 3.98 -25.68 -0.10 0.65 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.15 -1.38 6.59 -24.72 -0.16 -1.55 16 5 C -0.14 -1.47 5.71 -25.20 -0.14 -1.61 16 6 C 0.07 0.97 3.15 -27.31 -0.09 0.89 16 7 H 0.09 1.16 7.66 -51.93 -0.40 0.76 16 8 C 0.52 10.09 6.83 -10.98 -0.08 10.01 16 9 O -0.51 -12.47 16.64 -14.01 -0.23 -12.70 16 10 N -0.61 -10.66 2.85 -161.51 -0.46 -11.12 16 11 C 0.10 1.26 5.87 -2.43 -0.01 1.25 16 12 C -0.12 -1.67 6.25 -24.64 -0.15 -1.83 16 13 C -0.11 -1.81 3.90 -88.34 -0.34 -2.16 16 14 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 15 C 0.15 2.99 6.65 -3.86 -0.03 2.96 16 16 N -0.60 -15.85 3.37 -172.19 -0.58 -16.43 16 17 C -0.23 -6.69 10.25 -15.06 -0.15 -6.84 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 20 N -0.91 -28.52 10.17 55.49 0.56 -27.95 16 21 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 25 C 0.17 4.33 4.80 -3.37 -0.02 4.32 16 26 C 0.12 2.35 3.88 -65.72 -0.25 2.09 16 27 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 28 O -0.34 -5.59 10.44 -54.80 -0.57 -6.16 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.88 7.68 -51.93 -0.40 0.48 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.75 7.36 -51.93 -0.38 0.37 16 38 H 0.08 1.34 7.88 -51.93 -0.41 0.93 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.50 7.74 -51.93 -0.40 0.09 16 42 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.02 0.57 7.94 -51.93 -0.41 0.16 16 44 H 0.10 2.94 6.22 -51.93 -0.32 2.62 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -36.19 343.55 -9.74 -45.93 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.34 Total: -1.38 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.27 Total: 6.82 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.48 Total: -55.51 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.81 Total: -18.86 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.19 -9.74 -45.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076266606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.732 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds