Wall clock time and date at job start Tue Mar 31 2020 06:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.67587 * 2 1 4 4 C 1.55000 * 110.61526 * 237.03407 * 2 1 3 5 5 C 1.54818 * 102.09030 * 204.47771 * 4 2 1 6 6 C 1.54097 * 104.18808 * 20.87976 * 5 4 2 7 7 H 1.08998 * 109.88273 * 242.60534 * 6 5 4 8 8 C 1.50700 * 110.00349 * 121.52512 * 6 5 4 9 9 O 1.21286 * 120.00095 * 245.64040 * 8 6 5 10 10 N 1.34778 * 120.00019 * 65.64004 * 8 6 5 11 11 C 1.47356 * 125.52506 * 359.69353 * 10 8 6 12 12 C 1.55156 * 104.78122 * 156.48799 * 11 10 8 13 13 C 1.54799 * 101.40178 * 37.52162 * 12 11 10 14 14 H 1.09005 * 112.63960 * 85.17756 * 13 12 11 15 15 C 1.53267 * 109.74340 * 212.12380 * 13 12 11 16 16 N 1.46586 * 108.15739 * 95.76569 * 15 13 12 17 17 C 1.36939 * 125.30487 * 177.88841 * 16 15 13 18 18 H 1.07997 * 120.00081 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99983 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99634 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47391 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46989 * 120.00109 * 21 19 17 24 24 H 1.48501 * 109.47125 * 239.99853 * 21 19 17 25 25 C 1.46601 * 109.38663 * 357.88697 * 16 15 13 26 26 C 1.47215 * 125.53246 * 180.02562 * 10 8 6 27 27 H 1.09002 * 112.28710 * 56.20844 * 26 10 8 28 28 O 1.43745 * 107.29442 * 2.03270 * 6 5 4 29 29 H 1.09003 * 109.46836 * 298.48606 * 1 2 3 30 30 H 1.08994 * 109.47163 * 58.48871 * 1 2 3 31 31 H 1.09002 * 109.47298 * 178.49042 * 1 2 3 32 32 H 1.08996 * 110.90766 * 86.28222 * 4 2 1 33 33 H 1.09001 * 110.94010 * 322.68241 * 4 2 1 34 34 H 1.09004 * 110.48564 * 262.20686 * 5 4 2 35 35 H 1.08997 * 110.48807 * 139.56009 * 5 4 2 36 36 H 1.09004 * 110.35501 * 275.43254 * 11 10 8 37 37 H 1.08993 * 110.35340 * 37.72798 * 11 10 8 38 38 H 1.08991 * 111.21039 * 279.43371 * 12 11 10 39 39 H 1.09004 * 110.95444 * 155.49351 * 12 11 10 40 40 H 1.09004 * 109.73626 * 215.44737 * 15 13 12 41 41 H 1.08997 * 109.74103 * 336.07436 * 15 13 12 42 42 H 0.96999 * 119.99734 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.91444 * 258.45015 * 25 16 15 44 44 H 1.09001 * 109.91279 * 137.17296 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0757 -0.7894 -1.2172 5 6 3.4795 -1.2169 -0.7235 6 6 3.3839 -1.1255 0.8118 7 1 4.0853 -0.3784 1.1831 8 6 3.6900 -2.4662 1.4280 9 8 2.8253 -3.0700 2.0270 10 7 4.9247 -2.9944 1.3136 11 6 6.0604 -2.3722 0.6104 12 6 7.3208 -3.0088 1.2533 13 6 6.8482 -4.4660 1.4755 14 1 6.9835 -5.0903 0.5922 15 6 7.5187 -5.0426 2.7273 16 7 6.5986 -4.8759 3.8562 17 6 6.8294 -5.3065 5.1355 18 1 7.7511 -5.8153 5.3760 19 6 5.8785 -5.0891 6.1231 20 7 4.7550 -4.4694 5.8298 21 14 6.1929 -5.6771 7.8680 22 1 7.5200 -6.3400 7.9354 23 1 6.1730 -4.5154 8.7930 24 1 5.1361 -6.6426 8.2630 25 6 5.3930 -4.1763 3.4021 26 6 5.3556 -4.2896 1.8649 27 1 4.7344 -5.1146 1.5163 28 8 2.0384 -0.7354 1.1337 29 1 -0.3633 0.4902 0.9033 30 1 -0.3633 0.5371 -0.8761 31 1 -0.3634 -1.0273 -0.0271 32 1 2.1509 -0.1477 -2.0950 33 1 1.4551 -1.6607 -1.4264 34 1 4.2406 -0.5333 -1.0997 35 1 3.6974 -2.2393 -1.0321 36 1 6.0183 -2.6010 -0.4545 37 1 6.0587 -1.2937 0.7677 38 1 7.5657 -2.5284 2.2005 39 1 8.1682 -2.9727 0.5685 40 1 7.7293 -6.1016 2.5774 41 1 8.4472 -4.5078 2.9271 42 1 4.0903 -4.3178 6.5199 43 1 5.4392 -3.1278 3.6963 44 1 4.5076 -4.6461 3.8306 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076266606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:03 Heat of formation + Delta-G solvation = -67.727881 kcal Electronic energy + Delta-G solvation = -25085.083251 eV Core-core repulsion = 21616.253000 eV Total energy + Delta-G solvation = -3468.830251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78008 -40.47813 -38.84349 -36.69195 -34.25869 -33.28482 -32.76943 -32.10678 -30.40360 -28.64316 -27.42860 -26.35711 -24.25903 -22.92104 -22.35886 -22.13057 -21.11573 -20.15873 -18.95280 -18.20874 -17.66367 -17.42588 -16.86703 -16.52707 -16.08967 -15.56182 -15.29958 -15.08759 -14.81143 -14.60711 -14.40713 -14.14468 -13.77413 -13.51351 -13.44294 -13.27759 -13.18526 -12.97273 -12.83425 -12.65573 -12.58629 -12.42017 -12.13126 -11.90076 -11.85302 -11.81152 -11.68854 -11.48709 -11.40780 -11.06756 -10.78728 -10.45614 -9.63564 -8.94539 -7.81882 -5.27939 1.40405 1.43307 1.54080 1.57321 1.81814 2.45889 2.91581 3.27785 3.31105 3.54125 3.60983 3.65285 3.79843 3.85675 3.93490 4.01946 4.20155 4.32391 4.34007 4.38654 4.44782 4.48748 4.54884 4.58912 4.70117 4.78222 4.84732 4.89290 4.94112 4.97111 5.02570 5.11640 5.18885 5.19207 5.21879 5.26387 5.44890 5.48960 5.55022 5.78190 5.93385 6.21779 6.59292 7.03847 7.21185 7.75934 8.36280 9.20643 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.004503 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.499569 B = 6216.682137 C = 7324.493919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 H 0.095 0.905 4 C -0.142 4.142 5 C -0.134 4.134 6 C 0.070 3.930 7 H 0.108 0.892 8 C 0.509 3.491 9 O -0.583 6.583 10 N -0.606 5.606 11 C 0.096 3.904 12 C -0.115 4.115 13 C -0.091 4.091 14 H 0.132 0.868 15 C 0.136 3.864 16 N -0.625 5.625 17 C -0.241 4.241 18 H 0.092 0.908 19 C -0.074 4.074 20 N -0.953 5.953 21 Si 0.983 3.017 22 H -0.256 1.256 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.186 3.814 26 C 0.117 3.883 27 H 0.066 0.934 28 O -0.391 6.391 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.130 0.870 40 H 0.031 0.969 41 H 0.039 0.961 42 H 0.242 0.758 43 H -0.024 1.024 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 10.913 -22.016 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.001 4.001 3 H 0.113 0.887 4 C -0.180 4.180 5 C -0.172 4.172 6 C 0.009 3.991 7 H 0.126 0.874 8 C 0.298 3.702 9 O -0.461 6.461 10 N -0.341 5.341 11 C -0.025 4.025 12 C -0.153 4.153 13 C -0.110 4.110 14 H 0.150 0.850 15 C 0.011 3.989 16 N -0.352 5.352 17 C -0.370 4.370 18 H 0.109 0.891 19 C -0.266 4.266 20 N -0.603 5.603 21 Si 0.811 3.189 22 H -0.179 1.179 23 H -0.221 1.221 24 H -0.222 1.222 25 C 0.059 3.941 26 C 0.013 3.987 27 H 0.084 0.916 28 O -0.311 6.311 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.148 0.852 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.051 0.949 43 H -0.006 1.006 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.673 10.593 -21.328 23.872 hybrid contribution -0.460 -0.537 1.884 2.013 sum 1.213 10.057 -19.443 21.924 Atomic orbital electron populations 1.21809 0.92728 1.02343 1.03427 1.23584 0.96008 0.96090 0.84408 0.88705 1.23214 0.94984 1.00862 0.98907 1.22995 1.00215 1.04530 0.89449 1.22673 0.86750 0.91825 0.97875 0.87446 1.21104 0.80984 0.88287 0.79851 1.90727 1.47764 1.63846 1.43807 1.48589 1.10530 1.20390 1.54560 1.22833 0.83347 0.98712 0.97561 1.22872 0.98200 0.92662 1.01535 1.22925 0.90764 0.98956 0.98388 0.84972 1.21284 0.93033 0.98163 0.86408 1.44512 1.17312 1.67413 1.05969 1.19575 1.02251 1.30369 0.84817 0.89065 1.25834 0.96489 1.01443 1.02880 1.70306 1.09358 1.48148 1.32457 0.84934 0.77924 0.77056 0.78974 1.17926 1.22070 1.22167 1.21129 0.90343 0.92701 0.89892 1.22630 0.96416 0.85560 0.94141 0.91607 1.89040 1.27234 1.73883 1.40935 0.92740 0.87795 0.93548 0.86024 0.91650 0.85287 0.90376 0.87031 0.88808 0.93104 0.85196 0.95074 0.94328 0.94897 1.00634 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.66 71.98 0.70 -2.08 16 2 C 0.06 1.14 3.98 31.28 0.12 1.26 16 3 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.14 -2.18 6.59 31.90 0.21 -1.97 16 5 C -0.13 -2.22 5.71 31.59 0.18 -2.04 16 6 C 0.07 1.97 3.15 30.22 0.10 2.06 16 7 H 0.11 2.57 7.66 -2.39 -0.02 2.55 16 8 C 0.51 20.35 6.83 87.66 0.60 20.95 16 9 O -0.58 -31.38 16.64 15.66 0.26 -31.12 16 10 N -0.61 -21.06 2.85 -783.29 -2.23 -23.29 16 11 C 0.10 2.00 5.87 86.95 0.51 2.51 16 12 C -0.12 -2.66 6.25 31.95 0.20 -2.46 16 13 C -0.09 -2.77 3.90 -9.32 -0.04 -2.81 16 14 H 0.13 2.94 8.14 -2.38 -0.02 2.92 16 15 C 0.14 5.40 6.65 86.45 0.58 5.98 16 16 N -0.63 -34.07 3.37 -698.69 -2.36 -36.42 16 17 C -0.24 -14.24 10.25 84.03 0.86 -13.38 16 18 H 0.09 5.02 7.83 -2.91 -0.02 4.99 16 19 C -0.07 -4.56 5.48 84.86 0.47 -4.09 16 20 N -0.95 -64.15 10.17 21.65 0.22 -63.93 16 21 Si 0.98 48.78 29.55 68.60 2.03 50.81 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 25 C 0.19 10.41 4.80 86.76 0.42 10.83 16 26 C 0.12 4.86 3.88 46.03 0.18 5.04 16 27 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 28 O -0.39 -13.10 10.44 -130.27 -1.36 -14.46 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 34 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.39 7.68 -2.39 -0.02 1.37 16 36 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.56 7.36 -2.39 -0.02 1.54 16 38 H 0.05 1.53 7.88 -2.39 -0.02 1.51 16 39 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.04 1.45 7.74 -2.39 -0.02 1.43 16 42 H 0.24 15.97 8.31 -92.71 -0.77 15.20 16 43 H -0.02 -1.53 7.94 -2.39 -0.02 -1.55 16 44 H 0.03 2.26 6.22 -2.39 -0.01 2.24 16 Total: -1.00 -92.60 343.55 2.60 -89.99 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.97 Total: 8.63 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 5.07 Total: 19.80 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -4.37 Total: -123.64 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.10 Total: -45.59 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Total: -92.60 2.60 -89.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076266606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.267 kcal (2) G-P(sol) polarization free energy of solvation -92.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds