Wall clock time and date at job start Tue Mar 31 2020 07:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.88288 * 2 1 4 4 C 1.54905 * 111.00334 * 236.12545 * 2 1 3 5 5 N 1.47425 * 104.83192 * 204.87674 * 4 2 1 6 6 C 1.36936 * 125.64932 * 204.08983 * 5 4 2 7 7 H 1.07997 * 120.00015 * 26.01017 * 6 5 4 8 8 C 1.38810 * 119.99782 * 206.00870 * 6 5 4 9 9 N 1.31628 * 119.99789 * 214.47366 * 8 6 5 10 10 Si 1.86792 * 120.00337 * 34.48312 * 8 6 5 11 11 H 1.48500 * 109.47151 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47142 * 239.99823 * 10 8 6 13 13 H 1.48508 * 109.47417 * 119.99705 * 10 8 6 14 14 C 1.47024 * 108.70208 * 24.35539 * 5 4 2 15 15 C 1.54338 * 107.26406 * 358.58720 * 14 5 4 16 16 H 1.08995 * 110.66632 * 96.52318 * 15 14 5 17 17 N 1.46499 * 110.84740 * 219.67296 * 15 14 5 18 18 C 1.34770 * 120.00401 * 268.69319 * 17 15 14 19 19 O 1.21282 * 119.99666 * 359.97438 * 18 17 15 20 20 C 1.50705 * 120.00388 * 179.97438 * 18 17 15 21 21 C 1.50700 * 109.46894 * 179.97438 * 20 18 17 22 22 C 1.29991 * 118.73827 * 94.73740 * 21 20 18 23 23 C 1.50229 * 122.86321 * 180.14222 * 22 21 20 24 24 O 1.42896 * 110.19032 * 344.88179 * 23 22 21 25 25 C 1.43301 * 113.02406 * 49.97334 * 24 23 22 26 26 C 1.50388 * 118.74927 * 274.99995 * 21 20 18 27 27 H 1.09001 * 109.46997 * 182.42216 * 1 2 3 28 28 H 1.09000 * 109.46889 * 302.42315 * 1 2 3 29 29 H 1.08995 * 109.47256 * 62.42335 * 1 2 3 30 30 H 1.08996 * 110.37003 * 86.03608 * 4 2 1 31 31 H 1.09006 * 110.36639 * 323.71287 * 4 2 1 32 32 H 0.97000 * 119.99944 * 5.09675 * 9 8 6 33 33 H 1.08994 * 109.88192 * 118.13329 * 14 5 4 34 34 H 1.08998 * 109.88047 * 239.29799 * 14 5 4 35 35 H 0.97002 * 120.00079 * 88.69073 * 17 15 14 36 36 H 1.08996 * 109.46785 * 299.99987 * 20 18 17 37 37 H 1.09001 * 109.46778 * 60.00293 * 20 18 17 38 38 H 1.07994 * 118.57260 * 0.38774 * 22 21 20 39 39 H 1.08998 * 109.50108 * 224.55291 * 23 22 21 40 40 H 1.08999 * 109.05165 * 104.92920 * 23 22 21 41 41 H 1.08999 * 109.68833 * 172.07062 * 25 24 23 42 42 H 1.09009 * 109.67788 * 51.51956 * 25 24 23 43 43 H 1.08994 * 109.45211 * 283.41813 * 26 21 20 44 44 H 1.09000 * 109.44456 * 43.36801 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8060 -1.2007 5 7 3.4275 -1.2419 -0.7743 6 6 4.4643 -1.5648 -1.6086 7 1 4.5131 -1.1380 -2.5994 8 6 5.4525 -2.4407 -1.1806 9 7 6.6969 -2.2725 -1.5753 10 14 5.0164 -3.8582 -0.0450 11 1 3.5612 -3.8268 0.2495 12 1 5.7802 -3.7304 1.2220 13 1 5.3610 -5.1440 -0.7033 14 6 3.4667 -1.2785 0.6950 15 6 2.0870 -0.8079 1.2018 16 1 1.4465 -1.6617 1.4226 17 7 2.2294 0.0494 2.3812 18 6 2.2020 -0.4918 3.6151 19 8 2.0588 -1.6887 3.7492 20 6 2.3491 0.3900 4.8283 21 6 2.2840 -0.4551 6.0744 22 6 3.3950 -0.8676 6.6086 23 6 3.4380 -1.7164 7.8474 24 8 2.1710 -1.6897 8.5077 25 6 1.0742 -1.9638 7.6272 26 6 0.9362 -0.7938 6.6490 27 1 -0.3633 -1.0268 0.0434 28 1 -0.3633 0.5510 0.8675 29 1 -0.3633 0.4757 -0.9109 30 1 2.1553 -0.1712 -2.0839 31 1 1.4522 -1.6701 -1.4027 32 1 6.9371 -1.4956 -2.1041 33 1 3.6617 -2.2954 1.0353 34 1 4.2431 -0.6072 1.0619 35 1 2.3436 1.0067 2.2740 36 1 3.3085 0.9057 4.7883 37 1 1.5427 1.1232 4.8445 38 1 4.3278 -0.5848 6.1438 39 1 4.2052 -1.3367 8.5221 40 1 3.6783 -2.7421 7.5678 41 1 0.1564 -2.0691 8.2056 42 1 1.2680 -2.8834 7.0747 43 1 0.5373 0.0736 7.1747 44 1 0.2579 -1.0733 5.8428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080390713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:49 Heat of formation + Delta-G solvation = -46.068046 kcal Electronic energy + Delta-G solvation = -24253.817728 eV Core-core repulsion = 20785.926718 eV Total energy + Delta-G solvation = -3467.891011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14922 -39.22471 -37.77760 -34.80238 -34.06149 -32.77507 -31.24999 -31.01719 -29.67152 -27.60774 -25.95388 -24.59309 -23.89655 -22.96974 -20.82176 -20.34141 -19.75625 -18.18200 -17.53278 -16.94459 -16.68351 -16.43281 -15.92228 -15.24392 -15.16120 -14.82045 -14.33054 -13.84972 -13.66985 -13.34646 -13.13354 -13.07179 -13.01350 -12.85051 -12.53591 -12.37632 -12.14428 -11.90853 -11.75072 -11.42599 -11.09406 -10.89413 -10.77681 -10.73388 -10.48121 -10.30547 -9.87185 -9.77259 -9.63600 -9.26395 -8.95066 -8.75482 -8.33026 -6.99227 -6.39089 -3.26615 1.93381 2.74658 3.37255 3.53878 3.58125 3.71395 3.74277 4.46066 4.53134 4.64820 4.76650 4.81690 4.97562 5.02286 5.05626 5.17901 5.19246 5.22413 5.27253 5.30559 5.35929 5.46570 5.51405 5.58073 5.65340 5.75254 5.77001 5.77798 5.90894 5.99171 6.13743 6.27633 6.32079 6.43475 6.52658 6.66134 6.67876 6.82405 6.90553 6.96003 7.63956 7.87732 8.34605 8.38480 8.97887 9.58199 10.31315 11.03490 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.004315 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.600373 B = 6487.803531 C = 7596.242474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.079 0.921 4 C 0.133 3.867 5 N -0.602 5.602 6 C -0.344 4.344 7 H 0.070 0.930 8 C 0.005 3.995 9 N -0.899 5.899 10 Si 1.030 2.970 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.296 1.296 14 C 0.117 3.883 15 C 0.135 3.865 16 H 0.095 0.905 17 N -0.718 5.718 18 C 0.512 3.488 19 O -0.533 6.533 20 C -0.108 4.108 21 C -0.090 4.090 22 C -0.190 4.190 23 C 0.092 3.908 24 O -0.382 6.382 25 C 0.059 3.941 26 C -0.114 4.114 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.024 0.976 32 H 0.267 0.733 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.733 7.780 15.795 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 H 0.098 0.902 4 C 0.007 3.993 5 N -0.330 5.330 6 C -0.471 4.471 7 H 0.088 0.912 8 C -0.199 4.199 9 N -0.536 5.536 10 Si 0.861 3.139 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.224 1.224 14 C -0.009 4.009 15 C 0.030 3.970 16 H 0.113 0.887 17 N -0.369 5.369 18 C 0.298 3.702 19 O -0.409 6.409 20 C -0.148 4.148 21 C -0.091 4.091 22 C -0.208 4.208 23 C 0.016 3.984 24 O -0.301 6.301 25 C -0.017 4.017 26 C -0.151 4.151 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.151 5.598 16.748 21.435 hybrid contribution -0.367 1.738 -1.300 2.201 sum -12.518 7.336 15.447 21.193 Atomic orbital electron populations 1.21687 0.94679 1.01886 1.01200 1.22614 0.95174 0.99510 0.95859 0.90245 1.21702 0.87822 0.95433 0.94327 1.44641 1.08278 1.80078 0.99958 1.19806 1.01007 1.26839 0.99423 0.91204 1.26013 0.92725 1.00138 1.01043 1.70874 1.16157 1.31451 1.35139 0.84359 0.75665 0.77822 0.76100 1.20396 1.22079 1.22353 1.21951 0.94010 0.99094 0.85861 1.22106 0.98031 0.93421 0.83408 0.88707 1.45999 1.74225 1.11083 1.05570 1.20525 0.76423 0.89017 0.84237 1.90719 1.48430 1.15434 1.86341 1.20813 1.04818 0.97989 0.91179 1.20354 0.95093 0.98789 0.94857 1.22722 0.98553 1.00612 0.98929 1.21394 0.86094 0.98498 0.92400 1.88080 1.14851 1.92219 1.34947 1.22636 0.90107 0.96791 0.92193 1.21012 0.95319 0.99540 0.99247 0.92542 0.93056 0.92474 0.93588 0.95812 0.92267 0.94665 0.94623 0.76745 0.88203 0.88298 0.86568 0.88037 0.91825 0.88638 0.92343 0.90222 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.30 37.16 0.35 -1.34 16 2 C -0.11 -1.73 3.27 -88.47 -0.29 -2.02 16 3 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 4 C 0.13 2.65 6.70 -2.53 -0.02 2.63 16 5 N -0.60 -14.94 3.06 -170.07 -0.52 -15.46 16 6 C -0.34 -9.92 10.24 -15.06 -0.15 -10.07 16 7 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 8 C 0.00 0.15 5.29 -17.43 -0.09 0.05 16 9 N -0.90 -28.05 13.70 55.49 0.76 -27.29 16 10 Si 1.03 27.37 26.22 -169.99 -4.46 22.92 16 11 H -0.28 -7.16 6.16 56.52 0.35 -6.81 16 12 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 13 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 14 C 0.12 2.66 5.79 -3.06 -0.02 2.64 16 15 C 0.14 2.37 2.78 -66.09 -0.18 2.18 16 16 H 0.09 1.79 7.42 -51.93 -0.39 1.41 16 17 N -0.72 -9.95 5.11 -52.03 -0.27 -10.22 16 18 C 0.51 7.41 7.82 -10.99 -0.09 7.33 16 19 O -0.53 -10.02 15.68 5.56 0.09 -9.93 16 20 C -0.11 -1.11 5.77 -29.03 -0.17 -1.28 16 21 C -0.09 -1.04 4.40 -100.93 -0.44 -1.48 16 22 C -0.19 -2.19 9.54 -35.97 -0.34 -2.54 16 23 C 0.09 0.99 7.04 35.78 0.25 1.24 16 24 O -0.38 -4.51 10.84 -35.23 -0.38 -4.90 16 25 C 0.06 0.62 6.89 37.22 0.26 0.87 16 26 C -0.11 -1.17 6.09 -27.97 -0.17 -1.34 16 27 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.02 0.48 8.04 -51.93 -0.42 0.06 16 32 H 0.27 8.19 8.73 -40.82 -0.36 7.84 16 33 H 0.04 0.90 3.83 -51.93 -0.20 0.70 16 34 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 35 H 0.40 4.25 8.56 -40.82 -0.35 3.90 16 36 H 0.10 0.88 7.87 -51.93 -0.41 0.47 16 37 H 0.10 0.75 8.13 -51.93 -0.42 0.33 16 38 H 0.12 1.27 7.84 -52.49 -0.41 0.86 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.66 8.10 -51.92 -0.42 0.23 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -34.81 351.78 -7.87 -42.67 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.28 Total: 0.03 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.11 Total: -3.12 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.03 Total: -52.97 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.29 Total: -14.83 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.46 Total: 22.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.81 -7.87 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080390713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.396 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds