Wall clock time and date at job start Tue Mar 31 2020 07:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47523 * 2 1 4 4 C 1.50704 * 109.46978 * 240.00487 * 2 1 3 5 5 O 1.21284 * 120.00305 * 241.93091 * 4 2 1 6 6 N 1.34782 * 120.00010 * 61.92781 * 4 2 1 7 7 C 1.44954 * 117.32054 * 192.74048 * 6 4 2 8 8 C 1.51982 * 111.81979 * 203.69839 * 7 6 4 9 9 O 1.41262 * 111.56841 * 319.20914 * 8 7 6 10 10 C 1.40786 * 118.33447 * 57.05979 * 9 8 7 11 11 H 1.09001 * 109.34685 * 188.27713 * 10 9 8 12 12 C 1.54194 * 110.23120 * 67.66533 * 10 9 8 13 13 N 1.46876 * 106.39474 * 210.33687 * 12 10 9 14 14 C 1.36935 * 125.36717 * 197.81460 * 13 12 10 15 15 H 1.08004 * 119.99849 * 167.82703 * 14 13 12 16 16 C 1.38811 * 120.00069 * 347.83851 * 14 13 12 17 17 N 1.31616 * 119.99952 * 355.32665 * 16 14 13 18 18 Si 1.86794 * 120.00300 * 175.33070 * 16 14 13 19 19 H 1.48500 * 109.47171 * 84.98508 * 18 16 14 20 20 H 1.48495 * 109.47340 * 204.99061 * 18 16 14 21 21 H 1.48508 * 109.47102 * 324.99179 * 18 16 14 22 22 C 1.46788 * 109.27150 * 17.84002 * 13 12 10 23 23 C 1.44541 * 117.31912 * 12.72187 * 6 4 2 24 24 H 1.09005 * 109.48477 * 285.89769 * 23 6 4 25 25 C 1.52999 * 109.47300 * 120.00680 * 2 1 3 26 26 C 1.53004 * 117.49542 * 248.74475 * 25 2 1 27 27 C 1.53005 * 117.49743 * 180.08430 * 25 2 1 28 28 H 1.09003 * 109.47016 * 309.24066 * 1 2 3 29 29 H 1.08991 * 109.47396 * 69.23998 * 1 2 3 30 30 H 1.08998 * 109.47303 * 189.24646 * 1 2 3 31 31 H 1.08998 * 109.00518 * 324.27909 * 7 6 4 32 32 H 1.09005 * 109.00050 * 83.12211 * 7 6 4 33 33 H 1.08997 * 109.06363 * 79.81974 * 8 7 6 34 34 H 1.08999 * 109.06925 * 198.75748 * 8 7 6 35 35 H 1.08998 * 110.07586 * 91.10628 * 12 10 9 36 36 H 1.09001 * 110.06824 * 329.56628 * 12 10 9 37 37 H 0.97000 * 120.00077 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.83222 * 239.36068 * 22 13 12 39 39 H 1.09000 * 109.82874 * 118.38887 * 22 13 12 40 40 H 1.08997 * 115.55431 * 34.41815 * 25 2 1 41 41 H 1.08998 * 117.49883 * 359.97438 * 26 25 2 42 42 H 1.09003 * 117.49588 * 145.02468 * 26 25 2 43 43 H 1.08997 * 117.49785 * 214.97634 * 27 25 2 44 44 H 1.09001 * 117.50088 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7004 -1.7165 -1.1198 6 7 1.7390 -0.2275 -2.4543 7 6 1.9992 -1.0902 -3.5898 8 6 2.1884 -0.2954 -4.8713 9 8 1.2677 0.7722 -4.9611 10 6 1.2439 1.7230 -3.9231 11 1 0.3925 2.3891 -4.0630 12 6 2.5494 2.5436 -3.9216 13 7 2.7960 2.9276 -2.5255 14 6 3.6348 3.9292 -2.1154 15 1 3.6071 4.2713 -1.0913 16 6 4.5205 4.5052 -3.0158 17 7 4.6195 4.0276 -4.2383 18 14 5.5718 5.9578 -2.4926 19 1 6.7996 5.4632 -1.8195 20 1 5.9490 6.7523 -3.6891 21 1 4.8025 6.8127 -1.5530 22 6 2.0022 2.0680 -1.6391 23 6 1.1905 1.1078 -2.5266 24 1 0.1531 1.0934 -2.1921 25 6 2.0400 -0.7214 1.2491 26 6 2.7394 0.1229 2.3164 27 6 3.5551 -0.8265 1.4351 28 1 -0.3633 0.6501 0.7959 29 1 -0.3634 0.3642 -0.9608 30 1 -0.3634 -1.0143 0.1651 31 1 2.9014 -1.6702 -3.3955 32 1 1.1592 -1.7731 -3.7165 33 1 3.2021 0.1044 -4.8959 34 1 2.0475 -0.9580 -5.7253 35 1 2.4323 3.4340 -4.5393 36 1 3.3739 1.9353 -4.2935 37 1 5.2386 4.4298 -4.8674 38 1 1.3263 2.6783 -1.0402 39 1 2.6639 1.4982 -0.9868 40 1 1.4320 -1.5596 1.5892 41 1 2.8365 1.1922 2.1284 42 1 2.5917 -0.1601 3.3586 43 1 3.9436 -1.7336 1.8979 44 1 4.1884 -0.3813 0.6678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083037739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:08 Heat of formation + Delta-G solvation = 8.393052 kcal Electronic energy + Delta-G solvation = -26015.032245 eV Core-core repulsion = 22549.502845 eV Total energy + Delta-G solvation = -3465.529400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07161 -38.78256 -36.91592 -36.18351 -34.66049 -32.73793 -31.93910 -30.02411 -28.07752 -27.40586 -25.29681 -24.15285 -23.37986 -22.14627 -21.89531 -20.28385 -19.68662 -18.61883 -17.40862 -16.79613 -16.47090 -15.91107 -15.21913 -15.08617 -14.90709 -14.76599 -14.34082 -14.12527 -13.75585 -13.45316 -13.00956 -12.95269 -12.43061 -12.34982 -12.13102 -12.01989 -11.66639 -11.43873 -11.33650 -11.07393 -10.99308 -10.77881 -10.68458 -10.59005 -10.26081 -10.18215 -9.93768 -9.90674 -9.76211 -9.35007 -9.10593 -8.69521 -8.20838 -6.91559 -5.84114 -3.21200 2.85681 3.11710 3.34408 3.39570 3.41162 3.95878 4.12190 4.39169 4.65267 4.73877 4.85894 4.97139 5.05778 5.14196 5.25604 5.26362 5.36515 5.40537 5.42109 5.46160 5.58117 5.63935 5.67489 5.78949 5.83475 5.87046 5.96463 5.98758 6.06497 6.11454 6.15434 6.16899 6.25993 6.31172 6.40219 6.53778 6.86221 7.31153 7.39203 7.55870 7.64719 7.82440 8.13800 8.44171 9.07724 9.68418 10.31908 11.27754 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.006803 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.641162 B = 4114.977632 C = 5445.603378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 H 0.131 0.869 4 C 0.523 3.477 5 O -0.536 6.536 6 N -0.592 5.592 7 C 0.085 3.915 8 C 0.058 3.942 9 O -0.370 6.370 10 C 0.068 3.932 11 H 0.113 0.887 12 C 0.151 3.849 13 N -0.595 5.595 14 C -0.237 4.237 15 H 0.078 0.922 16 C -0.001 4.001 17 N -0.915 5.915 18 Si 0.913 3.087 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.114 3.886 23 C 0.098 3.902 24 H 0.082 0.918 25 C -0.131 4.131 26 C -0.184 4.184 27 C -0.158 4.158 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.255 0.745 38 H 0.039 0.961 39 H 0.045 0.955 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 -8.172 5.401 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.148 0.852 4 C 0.311 3.689 5 O -0.413 6.413 6 N -0.326 5.326 7 C -0.038 4.038 8 C -0.020 4.020 9 O -0.287 6.287 10 C 0.008 3.992 11 H 0.131 0.869 12 C 0.026 3.974 13 N -0.323 5.323 14 C -0.365 4.365 15 H 0.096 0.904 16 C -0.199 4.199 17 N -0.561 5.561 18 Si 0.743 3.257 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.206 1.206 22 C -0.012 4.012 23 C -0.007 4.007 24 H 0.100 0.900 25 C -0.150 4.150 26 C -0.221 4.221 27 C -0.195 4.195 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.507 -8.552 5.134 13.109 hybrid contribution 0.848 0.704 0.403 1.174 sum -7.659 -7.847 5.537 12.284 Atomic orbital electron populations 1.21872 0.92885 1.02409 1.03019 1.21766 0.97693 1.02578 0.91332 0.85190 1.20647 0.78842 0.84746 0.84618 1.90630 1.37287 1.26791 1.86581 1.46671 1.64514 1.15221 1.06231 1.21423 1.02386 0.93149 0.86832 1.22266 0.94603 0.88680 0.96400 1.86842 1.59789 1.36927 1.45134 1.22965 1.02392 0.89567 0.84230 0.86927 1.21748 0.91053 0.97433 0.87173 1.44150 1.50529 1.37182 1.00421 1.18960 1.12102 1.09292 0.96171 0.90423 1.24896 0.98537 1.00075 0.96379 1.69936 1.39199 1.42250 1.04747 0.86134 0.80358 0.81844 0.77366 1.21388 1.21504 1.20555 1.22237 0.93960 0.91692 0.93341 1.21824 0.97441 0.82025 0.99397 0.90007 1.21916 0.95963 1.01173 0.95934 1.23103 1.05186 0.97923 0.95878 1.22785 0.93668 1.00865 1.02169 0.91335 0.91305 0.92490 0.89310 0.92237 0.92192 0.87986 0.91423 0.94096 0.93480 0.94293 0.93823 0.88049 0.88645 0.89020 0.89139 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.03 37.16 0.34 -1.33 16 2 C -0.11 -1.62 1.86 -91.77 -0.17 -1.79 16 3 H 0.13 1.99 3.80 -51.93 -0.20 1.79 16 4 C 0.52 9.01 5.88 -10.98 -0.06 8.95 16 5 O -0.54 -10.52 14.52 5.55 0.08 -10.44 16 6 N -0.59 -10.02 3.07 -169.00 -0.52 -10.54 16 7 C 0.09 1.34 6.29 -5.39 -0.03 1.30 16 8 C 0.06 0.91 6.73 36.64 0.25 1.15 16 9 O -0.37 -6.52 10.25 -34.32 -0.35 -6.87 16 10 C 0.07 1.24 3.91 -26.27 -0.10 1.14 16 11 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 12 C 0.15 3.53 4.98 -3.21 -0.02 3.52 16 13 N -0.60 -14.46 3.39 -171.42 -0.58 -15.04 16 14 C -0.24 -6.36 10.22 -15.06 -0.15 -6.51 16 15 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 16 C 0.00 -0.04 5.45 -17.43 -0.09 -0.13 16 17 N -0.92 -26.26 10.55 55.49 0.59 -25.67 16 18 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.11 2.19 5.06 -3.42 -0.02 2.18 16 23 C 0.10 1.64 2.70 -68.67 -0.19 1.46 16 24 H 0.08 1.17 5.40 -51.93 -0.28 0.89 16 25 C -0.13 -1.78 4.70 -90.62 -0.43 -2.21 16 26 C -0.18 -2.26 10.18 -26.69 -0.27 -2.54 16 27 C -0.16 -2.28 9.02 -26.69 -0.24 -2.52 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.79 4.85 -51.93 -0.25 0.54 16 30 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.09 1.46 7.19 -51.93 -0.37 1.09 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.76 7.26 -51.93 -0.38 1.38 16 36 H 0.04 1.08 6.10 -51.93 -0.32 0.76 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 39 H 0.04 0.89 4.66 -51.93 -0.24 0.65 16 40 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 41 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -30.93 330.05 -8.60 -39.53 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.57 Total: 4.84 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.19 Total: 2.67 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.51 Total: -51.25 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.27 Total: -17.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.93 -8.60 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083037739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.921 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds