Wall clock time and date at job start Tue Mar 31 2020 07:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47523 * 2 1 4 4 C 1.50704 * 109.46978 * 240.00487 * 2 1 3 5 5 O 1.21284 * 120.00305 * 241.93091 * 4 2 1 6 6 N 1.34782 * 120.00010 * 61.92781 * 4 2 1 7 7 C 1.44954 * 117.32054 * 192.74048 * 6 4 2 8 8 C 1.51982 * 111.81979 * 203.69839 * 7 6 4 9 9 O 1.41262 * 111.56841 * 319.20914 * 8 7 6 10 10 C 1.40786 * 118.33447 * 57.05979 * 9 8 7 11 11 H 1.09001 * 109.34685 * 188.27713 * 10 9 8 12 12 C 1.54194 * 110.23120 * 67.66533 * 10 9 8 13 13 N 1.46876 * 106.39474 * 210.33687 * 12 10 9 14 14 C 1.36935 * 125.36717 * 197.81460 * 13 12 10 15 15 H 1.08004 * 119.99849 * 167.82703 * 14 13 12 16 16 C 1.38811 * 120.00069 * 347.83851 * 14 13 12 17 17 N 1.31616 * 119.99952 * 355.32665 * 16 14 13 18 18 Si 1.86794 * 120.00300 * 175.33070 * 16 14 13 19 19 H 1.48500 * 109.47171 * 84.98508 * 18 16 14 20 20 H 1.48495 * 109.47340 * 204.99061 * 18 16 14 21 21 H 1.48508 * 109.47102 * 324.99179 * 18 16 14 22 22 C 1.46788 * 109.27150 * 17.84002 * 13 12 10 23 23 C 1.44541 * 117.31912 * 12.72187 * 6 4 2 24 24 H 1.09005 * 109.48477 * 285.89769 * 23 6 4 25 25 C 1.52999 * 109.47300 * 120.00680 * 2 1 3 26 26 C 1.53004 * 117.49542 * 248.74475 * 25 2 1 27 27 C 1.53005 * 117.49743 * 180.08430 * 25 2 1 28 28 H 1.09003 * 109.47016 * 309.24066 * 1 2 3 29 29 H 1.08991 * 109.47396 * 69.23998 * 1 2 3 30 30 H 1.08998 * 109.47303 * 189.24646 * 1 2 3 31 31 H 1.08998 * 109.00518 * 324.27909 * 7 6 4 32 32 H 1.09005 * 109.00050 * 83.12211 * 7 6 4 33 33 H 1.08997 * 109.06363 * 79.81974 * 8 7 6 34 34 H 1.08999 * 109.06925 * 198.75748 * 8 7 6 35 35 H 1.08998 * 110.07586 * 91.10628 * 12 10 9 36 36 H 1.09001 * 110.06824 * 329.56628 * 12 10 9 37 37 H 0.97000 * 120.00077 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.83222 * 239.36068 * 22 13 12 39 39 H 1.09000 * 109.82874 * 118.38887 * 22 13 12 40 40 H 1.08997 * 115.55431 * 34.41815 * 25 2 1 41 41 H 1.08998 * 117.49883 * 359.97438 * 26 25 2 42 42 H 1.09003 * 117.49588 * 145.02468 * 26 25 2 43 43 H 1.08997 * 117.49785 * 214.97634 * 27 25 2 44 44 H 1.09001 * 117.50088 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7004 -1.7165 -1.1198 6 7 1.7390 -0.2275 -2.4543 7 6 1.9992 -1.0902 -3.5898 8 6 2.1884 -0.2954 -4.8713 9 8 1.2677 0.7722 -4.9611 10 6 1.2439 1.7230 -3.9231 11 1 0.3925 2.3891 -4.0630 12 6 2.5494 2.5436 -3.9216 13 7 2.7960 2.9276 -2.5255 14 6 3.6348 3.9292 -2.1154 15 1 3.6071 4.2713 -1.0913 16 6 4.5205 4.5052 -3.0158 17 7 4.6195 4.0276 -4.2383 18 14 5.5718 5.9578 -2.4926 19 1 6.7996 5.4632 -1.8195 20 1 5.9490 6.7523 -3.6891 21 1 4.8025 6.8127 -1.5530 22 6 2.0022 2.0680 -1.6391 23 6 1.1905 1.1078 -2.5266 24 1 0.1531 1.0934 -2.1921 25 6 2.0400 -0.7214 1.2491 26 6 2.7394 0.1229 2.3164 27 6 3.5551 -0.8265 1.4351 28 1 -0.3633 0.6501 0.7959 29 1 -0.3634 0.3642 -0.9608 30 1 -0.3634 -1.0143 0.1651 31 1 2.9014 -1.6702 -3.3955 32 1 1.1592 -1.7731 -3.7165 33 1 3.2021 0.1044 -4.8959 34 1 2.0475 -0.9580 -5.7253 35 1 2.4323 3.4340 -4.5393 36 1 3.3739 1.9353 -4.2935 37 1 5.2386 4.4298 -4.8674 38 1 1.3263 2.6783 -1.0402 39 1 2.6639 1.4982 -0.9868 40 1 1.4320 -1.5596 1.5892 41 1 2.8365 1.1922 2.1284 42 1 2.5917 -0.1601 3.3586 43 1 3.9436 -1.7336 1.8979 44 1 4.1884 -0.3813 0.6678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083037739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:07 Heat of formation + Delta-G solvation = -11.660309 kcal Electronic energy + Delta-G solvation = -26015.901824 eV Core-core repulsion = 22549.502845 eV Total energy + Delta-G solvation = -3466.398979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43700 -40.15190 -38.17323 -37.67373 -36.18389 -34.30159 -33.34536 -31.62441 -29.62350 -28.98772 -26.84730 -25.53907 -24.77643 -23.27425 -23.21847 -21.88452 -20.94714 -20.06855 -19.07160 -18.13082 -18.08637 -17.25859 -16.79703 -16.45618 -16.33211 -16.03587 -15.86098 -15.46471 -15.13085 -15.02159 -14.55552 -14.36896 -14.05565 -13.72220 -13.28389 -13.22458 -13.05051 -12.90225 -12.80791 -12.66412 -12.42596 -12.36183 -12.22593 -12.06960 -11.88505 -11.68886 -11.41034 -11.17451 -10.98192 -10.74544 -10.71994 -10.52196 -9.57401 -8.89358 -7.91478 -5.29959 1.44518 1.45792 1.52769 1.54552 1.83342 2.44987 2.70957 2.90532 3.27951 3.37498 3.52723 3.61098 3.67802 3.78315 3.91818 3.94864 3.98777 4.11805 4.19892 4.28500 4.34257 4.39121 4.43063 4.53161 4.59562 4.67388 4.76437 4.79910 4.81053 4.90954 4.98397 5.04212 5.09808 5.24641 5.26494 5.36057 5.40867 5.47533 5.53423 5.62434 6.13579 6.22638 6.36825 7.02664 7.11527 7.69961 8.32455 9.19049 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.006803 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.641162 B = 4114.977632 C = 5445.603378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.121 0.879 4 C 0.515 3.485 5 O -0.567 6.567 6 N -0.598 5.598 7 C 0.084 3.916 8 C 0.059 3.941 9 O -0.370 6.370 10 C 0.078 3.922 11 H 0.138 0.862 12 C 0.161 3.839 13 N -0.616 5.616 14 C -0.244 4.244 15 H 0.086 0.914 16 C -0.062 4.062 17 N -0.948 5.948 18 Si 0.977 3.023 19 H -0.289 1.289 20 H -0.295 1.295 21 H -0.264 1.264 22 C 0.112 3.888 23 C 0.107 3.893 24 H 0.125 0.875 25 C -0.132 4.132 26 C -0.161 4.161 27 C -0.181 4.181 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.025 0.975 34 H 0.141 0.859 35 H 0.031 0.969 36 H -0.001 1.001 37 H 0.247 0.753 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.414 -8.429 7.189 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.138 0.862 4 C 0.305 3.695 5 O -0.446 6.446 6 N -0.332 5.332 7 C -0.039 4.039 8 C -0.018 4.018 9 O -0.287 6.287 10 C 0.019 3.981 11 H 0.155 0.845 12 C 0.035 3.965 13 N -0.344 5.344 14 C -0.373 4.373 15 H 0.104 0.896 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.805 3.195 19 H -0.216 1.216 20 H -0.221 1.221 21 H -0.188 1.188 22 C -0.013 4.013 23 C 0.003 3.997 24 H 0.142 0.858 25 C -0.151 4.151 26 C -0.198 4.198 27 C -0.219 4.219 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.044 0.956 34 H 0.158 0.842 35 H 0.049 0.951 36 H 0.017 0.983 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.133 0.867 41 H 0.111 0.889 42 H 0.136 0.864 43 H 0.116 0.884 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.060 -8.813 6.945 15.755 hybrid contribution 1.687 0.725 -0.147 1.842 sum -9.373 -8.088 6.798 14.124 Atomic orbital electron populations 1.21872 0.90123 1.03576 1.03982 1.21759 0.99867 1.01349 0.90088 0.86205 1.21265 0.78223 0.84538 0.85437 1.90615 1.38593 1.28381 1.87013 1.46839 1.64439 1.15297 1.06648 1.21487 1.02875 0.93204 0.86284 1.22408 0.92530 0.88590 0.98250 1.86855 1.59745 1.37031 1.45064 1.22860 1.00025 0.89648 0.85592 0.84455 1.21468 0.92636 0.95960 0.86416 1.44420 1.50681 1.37575 1.01679 1.19387 1.11936 1.09555 0.96424 0.89582 1.25726 1.00294 1.02956 0.96558 1.70160 1.40023 1.43645 1.05777 0.85131 0.78615 0.78935 0.76858 1.21576 1.22120 1.18807 1.22482 0.93877 0.91790 0.93176 1.21850 0.99005 0.81235 0.97601 0.85760 1.22021 0.95017 1.01909 0.96136 1.23162 1.02588 0.97267 0.96772 1.22712 0.94270 1.02099 1.02779 0.89059 0.91060 0.91715 0.90746 0.89499 0.95649 0.84157 0.95088 0.98292 0.94360 0.91587 0.94624 0.86713 0.88939 0.86379 0.88422 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.03 71.98 0.65 -1.97 16 2 C -0.11 -2.91 1.86 -11.54 -0.02 -2.93 16 3 H 0.12 3.43 3.80 -2.39 -0.01 3.42 16 4 C 0.52 17.22 5.88 87.66 0.52 17.73 16 5 O -0.57 -22.24 14.52 -3.04 -0.04 -22.29 16 6 N -0.60 -19.43 3.07 -806.96 -2.48 -21.90 16 7 C 0.08 2.56 6.29 86.33 0.54 3.10 16 8 C 0.06 1.83 6.73 71.65 0.48 2.31 16 9 O -0.37 -12.61 10.25 -145.72 -1.49 -14.10 16 10 C 0.08 2.77 3.91 30.90 0.12 2.90 16 11 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 12 C 0.16 7.77 4.98 86.71 0.43 8.21 16 13 N -0.62 -30.25 3.39 -696.23 -2.36 -32.61 16 14 C -0.24 -13.23 10.22 84.03 0.86 -12.38 16 15 H 0.09 4.40 7.83 -2.91 -0.02 4.37 16 16 C -0.06 -3.46 5.45 84.86 0.46 -3.00 16 17 N -0.95 -56.90 10.55 21.65 0.23 -56.67 16 18 Si 0.98 45.15 29.56 68.60 2.03 47.18 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.11 4.15 5.06 86.63 0.44 4.59 16 23 C 0.11 3.36 2.70 45.56 0.12 3.49 16 24 H 0.13 2.97 5.40 -2.38 -0.01 2.95 16 25 C -0.13 -3.32 4.70 -10.79 -0.05 -3.37 16 26 C -0.16 -3.60 10.18 30.62 0.31 -3.29 16 27 C -0.18 -5.18 9.02 30.62 0.28 -4.91 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.30 4.85 -2.39 -0.01 1.29 16 30 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 31 H 0.07 2.48 7.19 -2.39 -0.02 2.46 16 32 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.03 0.96 6.72 -2.39 -0.02 0.94 16 34 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.03 1.69 7.26 -2.39 -0.02 1.67 16 36 H 0.00 -0.05 6.10 -2.39 -0.01 -0.06 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 39 H 0.04 1.44 4.66 -2.39 -0.01 1.43 16 40 H 0.11 2.58 8.07 -2.39 -0.02 2.56 16 41 H 0.09 2.13 8.05 -2.39 -0.02 2.11 16 42 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.53 330.05 2.03 -68.50 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.00 Total: 21.40 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.14 Total: 10.49 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -4.61 Total: -111.18 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.54 Total: -36.39 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.53 2.03 -68.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083037739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.842 kcal (2) G-P(sol) polarization free energy of solvation -70.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds