Wall clock time and date at job start Tue Mar 31 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.55220 * 2 1 4 4 C 1.54994 * 110.61602 * 237.12762 * 2 1 3 5 5 C 1.54816 * 102.09139 * 204.31622 * 4 2 1 6 6 C 1.54104 * 104.18654 * 20.88003 * 5 4 2 7 7 H 1.08998 * 109.87349 * 242.46030 * 6 5 4 8 8 C 1.50698 * 109.88127 * 121.45490 * 6 5 4 9 9 O 1.21282 * 120.00031 * 245.30531 * 8 6 5 10 10 N 1.34779 * 119.99687 * 65.30305 * 8 6 5 11 11 C 1.47283 * 136.54701 * 0.02562 * 10 8 6 12 12 C 1.54079 * 87.60567 * 151.38307 * 11 10 8 13 13 H 1.09010 * 115.04256 * 141.63106 * 12 11 10 14 14 C 1.53061 * 111.39509 * 273.97086 * 12 11 10 15 15 C 1.52702 * 109.28245 * 142.28947 * 14 12 11 16 16 N 1.46540 * 108.49099 * 301.79581 * 15 14 12 17 17 C 1.36933 * 119.73665 * 236.40177 * 16 15 14 18 18 H 1.08006 * 119.99794 * 151.43537 * 17 16 15 19 19 C 1.38810 * 120.00227 * 331.43195 * 17 16 15 20 20 N 1.31621 * 120.00160 * 145.15482 * 19 17 16 21 21 Si 1.86800 * 119.99957 * 325.15912 * 19 17 16 22 22 H 1.48504 * 109.47193 * 264.64367 * 21 19 17 23 23 H 1.48500 * 109.47408 * 144.64238 * 21 19 17 24 24 H 1.48499 * 109.47220 * 24.64254 * 21 19 17 25 25 C 1.45697 * 120.52230 * 56.12199 * 16 15 14 26 26 C 1.46462 * 136.53701 * 179.97438 * 10 8 6 27 27 H 1.09009 * 111.44155 * 97.10133 * 26 10 8 28 28 O 1.43746 * 107.41791 * 1.95437 * 6 5 4 29 29 H 1.09004 * 109.47158 * 182.87330 * 1 2 3 30 30 H 1.08999 * 109.47140 * 302.87958 * 1 2 3 31 31 H 1.09004 * 109.47090 * 62.87784 * 1 2 3 32 32 H 1.08996 * 110.91504 * 86.11908 * 4 2 1 33 33 H 1.09001 * 110.93955 * 322.52242 * 4 2 1 34 34 H 1.08997 * 110.48500 * 262.20041 * 5 4 2 35 35 H 1.08998 * 110.48709 * 139.55491 * 5 4 2 36 36 H 1.08999 * 113.52737 * 266.06826 * 11 10 8 37 37 H 1.09002 * 113.53003 * 36.69581 * 11 10 8 38 38 H 1.08998 * 109.51799 * 262.33039 * 14 12 11 39 39 H 1.09009 * 109.51275 * 22.48573 * 14 12 11 40 40 H 1.09007 * 109.62175 * 182.01313 * 15 14 12 41 41 H 1.08996 * 109.55792 * 61.54280 * 15 14 12 42 42 H 0.96998 * 120.00113 * 179.97438 * 20 19 17 43 43 H 1.09000 * 108.78652 * 81.16385 * 25 16 15 44 44 H 1.09006 * 108.78676 * 199.48995 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7874 -1.2184 5 6 3.4811 -1.2120 -0.7270 6 6 3.3875 -1.1219 0.8085 7 1 4.0897 -0.3752 1.1793 8 6 3.6962 -2.4640 1.4204 9 8 2.8350 -3.0676 2.0245 10 7 4.9294 -2.9935 1.2964 11 6 6.2032 -2.6015 0.6696 12 6 6.9172 -3.4382 1.7486 13 1 7.7889 -3.9927 1.4007 14 6 7.1522 -2.6230 3.0226 15 6 6.9474 -3.5209 4.2406 16 7 5.5876 -4.0649 4.1936 17 6 4.7395 -3.8658 5.2501 18 1 3.6726 -3.8278 5.0863 19 6 5.2508 -3.7129 6.5314 20 7 4.6623 -2.8991 7.3822 21 14 6.7744 -4.6620 7.0484 22 1 6.3682 -5.9064 7.7498 23 1 7.5935 -3.8244 7.9609 24 1 7.5728 -5.0099 5.8456 25 6 5.1289 -4.8108 3.0291 26 6 5.6083 -4.2185 1.7248 27 1 5.6176 -4.9670 0.9324 28 8 2.0428 -0.7332 1.1356 29 1 -0.3634 -1.0264 0.0515 30 1 -0.3633 0.5579 0.8630 31 1 -0.3633 0.4685 -0.9147 32 1 2.1483 -0.1451 -2.0960 33 1 1.4568 -1.6599 -1.4273 34 1 4.2402 -0.5266 -1.1040 35 1 3.7008 -2.2338 -1.0365 36 1 6.3303 -2.9931 -0.3396 37 1 6.4116 -1.5337 0.7382 38 1 8.1702 -2.2335 3.0230 39 1 6.4446 -1.7947 3.0605 40 1 7.0785 -2.9371 5.1519 41 1 7.6705 -4.3362 4.2187 42 1 5.0194 -2.7925 8.2777 43 1 5.4915 -5.8360 3.1038 44 1 4.0389 -4.8238 3.0276 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084673321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:06 Heat of formation + Delta-G solvation = -2.415938 kcal Electronic energy + Delta-G solvation = -25372.262881 eV Core-core repulsion = 21906.264768 eV Total energy + Delta-G solvation = -3465.998113 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86781 -39.59784 -37.28070 -35.46954 -32.43210 -32.15200 -31.63275 -31.07327 -29.23686 -27.24752 -26.36263 -23.60881 -23.41548 -22.32165 -21.33820 -21.12181 -20.09462 -17.87526 -17.06308 -16.76699 -16.25994 -16.06455 -15.68251 -15.01021 -14.76997 -14.32086 -14.04809 -13.71791 -13.49843 -13.48638 -13.20630 -12.81049 -12.58586 -12.46131 -12.34303 -12.18701 -11.82461 -11.71761 -11.50881 -11.46187 -11.05212 -10.99562 -10.95382 -10.82263 -10.59151 -10.18687 -9.95794 -9.92850 -9.62800 -9.28393 -8.93354 -8.41487 -8.21301 -6.83937 -5.89439 -3.10911 2.88433 3.05591 3.46452 3.58469 3.62542 3.86232 4.33477 4.47077 4.51826 4.67454 4.68156 4.73373 5.00678 5.01715 5.03845 5.19406 5.26488 5.28620 5.38118 5.42940 5.45620 5.51152 5.57793 5.58743 5.69499 5.72994 5.79066 5.86819 5.92127 5.93705 6.05975 6.07354 6.28477 6.37769 6.45257 6.66254 6.82801 6.86705 6.89120 7.06443 8.11579 8.15013 8.51053 8.63931 9.13994 9.88279 10.23790 11.25701 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.005024 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.891749 B = 5571.771975 C = 6398.484441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.142 4.142 6 C 0.069 3.931 7 H 0.089 0.911 8 C 0.545 3.455 9 O -0.504 6.504 10 N -0.633 5.633 11 C 0.095 3.905 12 C -0.112 4.112 13 H 0.094 0.906 14 C -0.119 4.119 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.262 4.262 18 H 0.080 0.920 19 C 0.035 3.965 20 N -0.886 5.886 21 Si 0.836 3.164 22 H -0.295 1.295 23 H -0.297 1.297 24 H -0.255 1.255 25 C 0.142 3.858 26 C 0.129 3.871 27 H 0.078 0.922 28 O -0.340 6.340 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.260 0.740 43 H 0.022 0.978 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 5.301 -21.307 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.089 0.911 4 C -0.186 4.186 5 C -0.180 4.180 6 C 0.008 3.992 7 H 0.107 0.893 8 C 0.333 3.667 9 O -0.377 6.377 10 N -0.372 5.372 11 C -0.028 4.028 12 C -0.131 4.131 13 H 0.113 0.887 14 C -0.159 4.159 15 C 0.019 3.981 16 N -0.313 5.313 17 C -0.390 4.390 18 H 0.098 0.902 19 C -0.165 4.165 20 N -0.527 5.527 21 Si 0.663 3.337 22 H -0.223 1.223 23 H -0.224 1.224 24 H -0.179 1.179 25 C 0.015 3.985 26 C 0.025 3.975 27 H 0.096 0.904 28 O -0.258 6.258 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.617 5.104 -20.585 21.270 hybrid contribution 1.037 -0.444 0.234 1.152 sum 2.654 4.660 -20.351 21.046 Atomic orbital electron populations 1.21755 0.92922 1.03355 1.02262 1.23222 0.95598 0.95229 0.84970 0.91134 1.23190 0.95903 1.01016 0.98529 1.22883 0.98400 1.03247 0.93508 1.22467 0.87054 0.95013 0.94702 0.89326 1.19688 0.79968 0.86651 0.80411 1.90748 1.44856 1.61898 1.40173 1.49335 1.09108 1.23190 1.55556 1.23328 0.82153 1.00492 0.96850 1.22800 0.96462 0.97612 0.96220 0.88740 1.21836 1.00315 0.98944 0.94763 1.21145 0.86810 0.94454 0.95678 1.43737 1.11018 1.60899 1.15692 1.18853 0.90813 1.44684 0.84608 0.90209 1.25223 0.96833 0.98458 0.95957 1.70119 1.42567 1.32833 1.07205 0.87596 0.84961 0.82064 0.79076 1.22303 1.22358 1.17921 1.20302 1.00277 0.92727 0.85191 1.22302 0.89009 0.87982 0.98240 0.90440 1.89129 1.25945 1.73099 1.37611 0.91504 0.91623 0.91223 0.90015 0.90215 0.89886 0.90199 0.90300 0.90782 0.92323 0.91560 0.91393 0.95360 0.93020 0.96007 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.66 37.16 0.36 -1.14 16 2 C 0.07 0.79 3.97 -25.68 -0.10 0.68 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.15 -1.42 6.59 -24.72 -0.16 -1.59 16 5 C -0.14 -1.48 6.42 -25.20 -0.16 -1.64 16 6 C 0.07 1.05 3.70 -27.31 -0.10 0.95 16 7 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 8 C 0.55 10.44 7.13 -10.99 -0.08 10.36 16 9 O -0.50 -12.36 15.77 -14.01 -0.22 -12.58 16 10 N -0.63 -10.36 3.31 -187.77 -0.62 -10.98 16 11 C 0.10 1.09 7.58 -11.55 -0.09 1.00 16 12 C -0.11 -1.54 4.57 -90.33 -0.41 -1.95 16 13 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 14 C -0.12 -2.02 5.68 -26.85 -0.15 -2.17 16 15 C 0.15 3.15 4.28 -4.17 -0.02 3.13 16 16 N -0.59 -14.67 2.73 -175.19 -0.48 -15.15 16 17 C -0.26 -7.81 9.78 -15.06 -0.15 -7.96 16 18 H 0.08 2.68 8.01 -52.48 -0.42 2.26 16 19 C 0.04 1.06 4.82 -17.43 -0.08 0.98 16 20 N -0.89 -28.22 13.97 55.49 0.78 -27.45 16 21 Si 0.84 21.77 26.42 -169.99 -4.49 17.28 16 22 H -0.30 -7.92 7.11 56.52 0.40 -7.51 16 23 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 24 H -0.25 -6.16 4.86 56.52 0.27 -5.89 16 25 C 0.14 3.04 6.16 -5.45 -0.03 3.01 16 26 C 0.13 2.12 4.03 -77.73 -0.31 1.80 16 27 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 28 O -0.34 -5.84 10.47 -54.80 -0.57 -6.41 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.80 8.06 -51.93 -0.42 0.39 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.26 7.68 -51.92 -0.40 0.86 16 40 H 0.07 1.63 5.53 -51.92 -0.29 1.35 16 41 H 0.03 0.60 6.70 -51.93 -0.35 0.25 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 1.89 6.45 -51.93 -0.34 1.56 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -37.04 340.27 -9.34 -46.37 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.36 Total: -1.68 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.50 Total: 5.47 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.33 Total: -53.57 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.79 Total: -18.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.49 Total: 17.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.04 -9.34 -46.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084673321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.958 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds