Wall clock time and date at job start Tue Mar 31 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.55220 * 2 1 4 4 C 1.54994 * 110.61602 * 237.12762 * 2 1 3 5 5 C 1.54816 * 102.09139 * 204.31622 * 4 2 1 6 6 C 1.54104 * 104.18654 * 20.88003 * 5 4 2 7 7 H 1.08998 * 109.87349 * 242.46030 * 6 5 4 8 8 C 1.50698 * 109.88127 * 121.45490 * 6 5 4 9 9 O 1.21282 * 120.00031 * 245.30531 * 8 6 5 10 10 N 1.34779 * 119.99687 * 65.30305 * 8 6 5 11 11 C 1.47283 * 136.54701 * 0.02562 * 10 8 6 12 12 C 1.54079 * 87.60567 * 151.38307 * 11 10 8 13 13 H 1.09010 * 115.04256 * 141.63106 * 12 11 10 14 14 C 1.53061 * 111.39509 * 273.97086 * 12 11 10 15 15 C 1.52702 * 109.28245 * 142.28947 * 14 12 11 16 16 N 1.46540 * 108.49099 * 301.79581 * 15 14 12 17 17 C 1.36933 * 119.73665 * 236.40177 * 16 15 14 18 18 H 1.08006 * 119.99794 * 151.43537 * 17 16 15 19 19 C 1.38810 * 120.00227 * 331.43195 * 17 16 15 20 20 N 1.31621 * 120.00160 * 145.15482 * 19 17 16 21 21 Si 1.86800 * 119.99957 * 325.15912 * 19 17 16 22 22 H 1.48504 * 109.47193 * 264.64367 * 21 19 17 23 23 H 1.48500 * 109.47408 * 144.64238 * 21 19 17 24 24 H 1.48499 * 109.47220 * 24.64254 * 21 19 17 25 25 C 1.45697 * 120.52230 * 56.12199 * 16 15 14 26 26 C 1.46462 * 136.53701 * 179.97438 * 10 8 6 27 27 H 1.09009 * 111.44155 * 97.10133 * 26 10 8 28 28 O 1.43746 * 107.41791 * 1.95437 * 6 5 4 29 29 H 1.09004 * 109.47158 * 182.87330 * 1 2 3 30 30 H 1.08999 * 109.47140 * 302.87958 * 1 2 3 31 31 H 1.09004 * 109.47090 * 62.87784 * 1 2 3 32 32 H 1.08996 * 110.91504 * 86.11908 * 4 2 1 33 33 H 1.09001 * 110.93955 * 322.52242 * 4 2 1 34 34 H 1.08997 * 110.48500 * 262.20041 * 5 4 2 35 35 H 1.08998 * 110.48709 * 139.55491 * 5 4 2 36 36 H 1.08999 * 113.52737 * 266.06826 * 11 10 8 37 37 H 1.09002 * 113.53003 * 36.69581 * 11 10 8 38 38 H 1.08998 * 109.51799 * 262.33039 * 14 12 11 39 39 H 1.09009 * 109.51275 * 22.48573 * 14 12 11 40 40 H 1.09007 * 109.62175 * 182.01313 * 15 14 12 41 41 H 1.08996 * 109.55792 * 61.54280 * 15 14 12 42 42 H 0.96998 * 120.00113 * 179.97438 * 20 19 17 43 43 H 1.09000 * 108.78652 * 81.16385 * 25 16 15 44 44 H 1.09006 * 108.78676 * 199.48995 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7874 -1.2184 5 6 3.4811 -1.2120 -0.7270 6 6 3.3875 -1.1219 0.8085 7 1 4.0897 -0.3752 1.1793 8 6 3.6962 -2.4640 1.4204 9 8 2.8350 -3.0676 2.0245 10 7 4.9294 -2.9935 1.2964 11 6 6.2032 -2.6015 0.6696 12 6 6.9172 -3.4382 1.7486 13 1 7.7889 -3.9927 1.4007 14 6 7.1522 -2.6230 3.0226 15 6 6.9474 -3.5209 4.2406 16 7 5.5876 -4.0649 4.1936 17 6 4.7395 -3.8658 5.2501 18 1 3.6726 -3.8278 5.0863 19 6 5.2508 -3.7129 6.5314 20 7 4.6623 -2.8991 7.3822 21 14 6.7744 -4.6620 7.0484 22 1 6.3682 -5.9064 7.7498 23 1 7.5935 -3.8244 7.9609 24 1 7.5728 -5.0099 5.8456 25 6 5.1289 -4.8108 3.0291 26 6 5.6083 -4.2185 1.7248 27 1 5.6176 -4.9670 0.9324 28 8 2.0428 -0.7332 1.1356 29 1 -0.3634 -1.0264 0.0515 30 1 -0.3633 0.5579 0.8630 31 1 -0.3633 0.4685 -0.9147 32 1 2.1483 -0.1451 -2.0960 33 1 1.4568 -1.6599 -1.4273 34 1 4.2402 -0.5266 -1.1040 35 1 3.7008 -2.2338 -1.0365 36 1 6.3303 -2.9931 -0.3396 37 1 6.4116 -1.5337 0.7382 38 1 8.1702 -2.2335 3.0230 39 1 6.4446 -1.7947 3.0605 40 1 7.0785 -2.9371 5.1519 41 1 7.6705 -4.3362 4.2187 42 1 5.0194 -2.7925 8.2777 43 1 5.4915 -5.8360 3.1038 44 1 4.0389 -4.8238 3.0276 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084673321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:06 Heat of formation + Delta-G solvation = -30.163511 kcal Electronic energy + Delta-G solvation = -25373.466106 eV Core-core repulsion = 21906.264768 eV Total energy + Delta-G solvation = -3467.201338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.11992 -40.69439 -38.73661 -37.26411 -34.04195 -33.35842 -32.98804 -32.61597 -30.60666 -28.84691 -27.41965 -25.42274 -24.82426 -23.35657 -22.68629 -22.18322 -21.41999 -19.40257 -18.69449 -17.96786 -17.54785 -17.37024 -17.07290 -16.87339 -16.13100 -15.57144 -15.54032 -15.06274 -14.97767 -14.71705 -14.49912 -14.36230 -14.15188 -13.96623 -13.44415 -13.33094 -13.24474 -12.94792 -12.69270 -12.66987 -12.62820 -12.48209 -12.13154 -12.12087 -11.85757 -11.82852 -11.55865 -11.26792 -11.19871 -10.97625 -10.58696 -10.31549 -9.58753 -8.88937 -8.23436 -5.42700 1.34054 1.43625 1.53184 1.64440 1.77139 2.43691 2.88717 2.92030 3.32850 3.39333 3.47958 3.54626 3.80183 3.84627 3.92212 4.13472 4.16643 4.29134 4.34153 4.37407 4.43108 4.54630 4.55329 4.60147 4.67789 4.73080 4.75962 4.83715 4.88113 4.92434 4.98159 5.01014 5.03372 5.07491 5.15350 5.20532 5.23535 5.28499 5.60292 5.89410 5.91609 6.10951 6.87401 6.98086 7.27087 7.70143 8.02633 8.96820 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.005024 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.891749 B = 5571.771975 C = 6398.484441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 H 0.091 0.909 4 C -0.141 4.141 5 C -0.129 4.129 6 C 0.067 3.933 7 H 0.096 0.904 8 C 0.527 3.473 9 O -0.585 6.585 10 N -0.640 5.640 11 C 0.108 3.892 12 C -0.100 4.100 13 H 0.146 0.854 14 C -0.113 4.113 15 C 0.136 3.864 16 N -0.603 5.603 17 C -0.263 4.263 18 H 0.009 0.991 19 C -0.024 4.024 20 N -0.944 5.944 21 Si 0.924 3.076 22 H -0.303 1.303 23 H -0.292 1.292 24 H -0.217 1.217 25 C 0.139 3.861 26 C 0.114 3.886 27 H 0.119 0.881 28 O -0.394 6.394 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.033 0.967 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.262 0.738 43 H 0.036 0.964 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 5.626 -25.592 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.003 4.003 3 H 0.109 0.891 4 C -0.178 4.178 5 C -0.167 4.167 6 C 0.006 3.994 7 H 0.114 0.886 8 C 0.317 3.683 9 O -0.465 6.465 10 N -0.377 5.377 11 C -0.012 4.012 12 C -0.119 4.119 13 H 0.164 0.836 14 C -0.152 4.152 15 C 0.011 3.989 16 N -0.327 5.327 17 C -0.392 4.392 18 H 0.027 0.973 19 C -0.220 4.220 20 N -0.588 5.588 21 Si 0.750 3.250 22 H -0.232 1.232 23 H -0.219 1.219 24 H -0.140 1.140 25 C 0.013 3.987 26 C 0.010 3.990 27 H 0.136 0.864 28 O -0.314 6.314 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.269 5.432 -24.951 26.294 hybrid contribution -0.495 -0.512 1.594 1.746 sum 5.774 4.920 -23.357 24.558 Atomic orbital electron populations 1.21806 0.92652 1.02221 1.03576 1.23607 0.96073 0.96038 0.84532 0.89125 1.23195 0.94990 1.00906 0.98714 1.22920 0.99983 1.04426 0.89335 1.22625 0.86421 0.92394 0.97920 0.88606 1.20660 0.80142 0.87866 0.79583 1.90707 1.47652 1.64278 1.43828 1.49564 1.09608 1.23426 1.55076 1.23643 0.77741 1.01763 0.98075 1.22822 0.96600 0.97139 0.95314 0.83618 1.21726 1.01903 0.97389 0.94217 1.21284 0.84971 0.95511 0.97112 1.43779 1.11665 1.62049 1.15206 1.18529 0.88866 1.44749 0.87066 0.97299 1.25922 1.01779 0.98773 0.95526 1.70242 1.45915 1.34844 1.07796 0.86237 0.80364 0.78909 0.79505 1.23177 1.21860 1.14032 1.20356 0.97508 0.93811 0.87028 1.22588 0.90854 0.89417 0.96128 0.86373 1.89097 1.27345 1.74068 1.40842 0.93588 0.92797 0.87625 0.86003 0.91452 0.85802 0.90189 0.85253 0.88939 0.88057 0.94775 0.94421 0.93079 0.92903 0.94674 0.95660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.66 71.98 0.70 -2.35 16 2 C 0.05 1.23 3.97 31.28 0.12 1.35 16 3 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 4 C -0.14 -2.33 6.59 31.90 0.21 -2.12 16 5 C -0.13 -2.27 6.42 31.59 0.20 -2.07 16 6 C 0.07 2.04 3.70 30.22 0.11 2.16 16 7 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 8 C 0.53 21.10 7.13 87.66 0.63 21.72 16 9 O -0.59 -31.80 15.77 15.67 0.25 -31.55 16 10 N -0.64 -20.02 3.31 -866.35 -2.87 -22.89 16 11 C 0.11 1.86 7.58 81.09 0.61 2.48 16 12 C -0.10 -2.19 4.57 -10.61 -0.05 -2.24 16 13 H 0.15 1.92 8.14 -2.38 -0.02 1.90 16 14 C -0.11 -3.44 5.68 30.52 0.17 -3.27 16 15 C 0.14 5.66 4.28 86.27 0.37 6.02 16 16 N -0.60 -30.83 2.73 -708.17 -1.93 -32.76 16 17 C -0.26 -16.90 9.78 84.03 0.82 -16.07 16 18 H 0.01 0.69 8.01 -2.91 -0.02 0.67 16 19 C -0.02 -1.50 4.82 84.86 0.41 -1.09 16 20 N -0.94 -64.00 13.97 21.65 0.30 -63.70 16 21 Si 0.92 46.70 26.42 68.60 1.81 48.51 16 22 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 23 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.22 -9.57 4.86 99.48 0.48 -9.08 16 25 C 0.14 6.13 6.16 85.90 0.53 6.66 16 26 C 0.11 3.47 4.03 38.67 0.16 3.62 16 27 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 28 O -0.39 -14.36 10.47 -130.27 -1.36 -15.72 16 29 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.43 7.69 -2.39 -0.02 1.41 16 36 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.34 8.05 -2.39 -0.02 1.32 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.03 1.25 7.68 -2.38 -0.02 1.23 16 40 H 0.04 1.78 5.53 -2.38 -0.01 1.77 16 41 H 0.05 1.92 6.70 -2.39 -0.02 1.90 16 42 H 0.26 16.60 8.31 -92.71 -0.77 15.83 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.02 1.36 6.45 -2.38 -0.02 1.34 16 Total: -1.00 -96.81 340.27 1.94 -94.87 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.75 Total: 8.43 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 4.99 Total: 14.81 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -4.50 Total: -119.35 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -1.12 Total: -47.27 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.81 Total: 48.51 kcal Total: -96.81 1.94 -94.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084673321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.710 kcal (2) G-P(sol) polarization free energy of solvation -96.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds